Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC19.83■□□□□ 0.76
UBR4Q5T4S7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
UBR4Q5T4S7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UBR4Q5T4S7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBR4Q5T4S7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
UBR4Q5T4S7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
UBR4Q5T4S7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
UBR4Q5T4S7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
UBR4Q5T4S7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
UBR4Q5T4S7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC18.86■□□□□ 0.61
UBR4Q5T4S7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
UBR4Q5T4S7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBR4Q5T4S7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UBR4Q5T4S7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC18.65■□□□□ 0.58
UBR4Q5T4S7 ZNRF2P1-201ENST00000441407 443 ntBASIC18.63■□□□□ 0.57
UBR4Q5T4S7 AC006077.2-201ENST00000623591 457 ntBASIC18.52■□□□□ 0.55
UBR4Q5T4S7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBR4Q5T4S7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBR4Q5T4S7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBR4Q5T4S7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
UBR4Q5T4S7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
UBR4Q5T4S7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC18.39■□□□□ 0.53
UBR4Q5T4S7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
UBR4Q5T4S7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC18.27■□□□□ 0.52
UBR4Q5T4S7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC18.27■□□□□ 0.51
UBR4Q5T4S7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC18.23■□□□□ 0.51
UBR4Q5T4S7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC18.22■□□□□ 0.51
UBR4Q5T4S7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBR4Q5T4S7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBR4Q5T4S7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
UBR4Q5T4S7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
UBR4Q5T4S7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC18.07■□□□□ 0.48
UBR4Q5T4S7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
UBR4Q5T4S7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
UBR4Q5T4S7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
UBR4Q5T4S7 AP002365.1-201ENST00000603448 772 ntBASIC18.03■□□□□ 0.48
UBR4Q5T4S7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
UBR4Q5T4S7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
UBR4Q5T4S7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
UBR4Q5T4S7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
UBR4Q5T4S7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
UBR4Q5T4S7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
UBR4Q5T4S7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
UBR4Q5T4S7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC17.8■□□□□ 0.44
UBR4Q5T4S7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
UBR4Q5T4S7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC17.76■□□□□ 0.43
UBR4Q5T4S7 AL356512.1-201ENST00000607453 1739 ntBASIC17.76■□□□□ 0.43
UBR4Q5T4S7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBR4Q5T4S7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC17.73■□□□□ 0.43
UBR4Q5T4S7 RPS2P35-201ENST00000443417 897 ntBASIC17.72■□□□□ 0.43
UBR4Q5T4S7 AC015813.7-201ENST00000623294 581 ntBASIC17.71■□□□□ 0.43
UBR4Q5T4S7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC17.65■□□□□ 0.42
UBR4Q5T4S7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
UBR4Q5T4S7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.62■□□□□ 0.41
UBR4Q5T4S7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC17.59■□□□□ 0.41
UBR4Q5T4S7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
UBR4Q5T4S7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
UBR4Q5T4S7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
UBR4Q5T4S7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC17.52■□□□□ 0.4
UBR4Q5T4S7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
UBR4Q5T4S7 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.51■□□□□ 0.39
UBR4Q5T4S7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
UBR4Q5T4S7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC17.46■□□□□ 0.39
UBR4Q5T4S7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
UBR4Q5T4S7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC17.44■□□□□ 0.38
UBR4Q5T4S7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
UBR4Q5T4S7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
UBR4Q5T4S7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC17.39■□□□□ 0.37
UBR4Q5T4S7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC17.37■□□□□ 0.37
UBR4Q5T4S7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBR4Q5T4S7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
UBR4Q5T4S7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UBR4Q5T4S7 RARRES2P7-201ENST00000567349 469 ntBASIC17.28■□□□□ 0.36
UBR4Q5T4S7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC17.26■□□□□ 0.35
UBR4Q5T4S7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBR4Q5T4S7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UBR4Q5T4S7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC17.23■□□□□ 0.35
UBR4Q5T4S7 SUZ12P1-203ENST00000578195 985 ntBASIC17.22■□□□□ 0.35
UBR4Q5T4S7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UBR4Q5T4S7 DYNLL1-208ENST00000550178 581 ntBASIC17.2■□□□□ 0.34
UBR4Q5T4S7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC17.19■□□□□ 0.34
UBR4Q5T4S7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
UBR4Q5T4S7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC17.19■□□□□ 0.34
UBR4Q5T4S7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UBR4Q5T4S7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
UBR4Q5T4S7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
UBR4Q5T4S7 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
UBR4Q5T4S7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
UBR4Q5T4S7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC17.14■□□□□ 0.33
UBR4Q5T4S7 HLA-V-202ENST00000446817 847 ntBASIC17.13■□□□□ 0.33
UBR4Q5T4S7 AC136428.2-201ENST00000563187 214 ntBASIC17.12■□□□□ 0.33
UBR4Q5T4S7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC17.11■□□□□ 0.33
UBR4Q5T4S7 AC097358.2-201ENST00000607541 1159 ntBASIC17.1■□□□□ 0.33
UBR4Q5T4S7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
UBR4Q5T4S7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBR4Q5T4S7 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UBR4Q5T4S7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC17.06■□□□□ 0.32
UBR4Q5T4S7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC17.06■□□□□ 0.32
UBR4Q5T4S7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
UBR4Q5T4S7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms