Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.121e-6■■□□□ 13.9
YBX3P16989 EIF5-205ENST00000558506 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.311e-6■■□□□ 13.9
YBX3P16989 HSP90AA1-208ENST00000557234 584 ntTSL 325.66■■□□□ 1.79e-25■■□□□ 13.9
YBX3P16989 HSP90AA1-206ENST00000556554 552 ntTSL 28.54□□□□□ -1.049e-25■■□□□ 13.9
YBX3P16989 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.9■■■□□ 2.385e-8■■□□□ 13.9
YBX3P16989 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.455e-8■■□□□ 13.9
YBX3P16989 SAE1-204ENST00000414294 2211 ntTSL 221.9■■□□□ 1.15e-8■■□□□ 13.9
YBX3P16989 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.06■□□□□ 0.965e-8■■□□□ 13.9
YBX3P16989 SAE1-207ENST00000596995 2106 ntTSL 220.63■□□□□ 0.895e-8■■□□□ 13.9
YBX3P16989 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.55■□□□□ 0.565e-8■■□□□ 13.9
YBX3P16989 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.72■■□□□ 1.238e-10■■□□□ 13.9
YBX3P16989 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.018e-10■■□□□ 13.9
YBX3P16989 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.918e-10■■□□□ 13.9
YBX3P16989 RNASEK-208ENST00000570898 425 ntTSL 3 BASIC11.63□□□□□ -0.551e-6■■□□□ 13.9
YBX3P16989 RPS19-207ENST00000600467 420 ntTSL 227.07■■□□□ 1.921e-67■■□□□ 13.9
YBX3P16989 RPS19-208ENST00000601492 342 ntTSL 511.6□□□□□ -0.551e-67■■□□□ 13.9
YBX3P16989 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.33□□□□□ -0.284e-9■■□□□ 13.9
YBX3P16989 SON-208ENST00000455528 8394 ntTSL 1 (best)12.2□□□□□ -0.464e-9■■□□□ 13.9
YBX3P16989 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC11.76□□□□□ -0.534e-9■■□□□ 13.9
YBX3P16989 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC11.14□□□□□ -0.634e-9■■□□□ 13.9
YBX3P16989 SON-207ENST00000436227 5269 ntAPPRIS P1 TSL 58.64□□□□□ -1.034e-9■■□□□ 13.9
YBX3P16989 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.33□□□□□ -1.244e-9■■□□□ 13.9
YBX3P16989 STON2-205ENST00000555284 2362 ntTSL 1 (best)12.43□□□□□ -0.423e-6■■□□□ 13.8
YBX3P16989 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.883e-6■■□□□ 13.8
YBX3P16989 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.224e-7■■□□□ 13.8
YBX3P16989 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.96□□□□□ -0.184e-7■■□□□ 13.8
YBX3P16989 MICB-204ENST00000538442 2411 ntAPPRIS ALT2 TSL 2 BASIC9.74□□□□□ -0.854e-7■■□□□ 13.8
YBX3P16989 HDLBP-225ENST00000452931 801 ntTSL 512.24□□□□□ -0.452e-8■■□□□ 13.8
YBX3P16989 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.481e-6■■□□□ 13.8
YBX3P16989 PTPN11-203ENST00000530818 486 ntTSL 33.86□□□□□ -1.791e-6■■□□□ 13.8
YBX3P16989 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.8■■□□□ 1.082e-6■■□□□ 13.8
YBX3P16989 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.72■■□□□ 1.072e-6■■□□□ 13.8
YBX3P16989 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.462e-6■■□□□ 13.8
YBX3P16989 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)13.35□□□□□ -0.272e-6■■□□□ 13.8
YBX3P16989 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)9.63□□□□□ -0.872e-6■■□□□ 13.8
YBX3P16989 FKBP4-203ENST00000539181 370 ntTSL 310.39□□□□□ -0.756e-10■■□□□ 13.8
YBX3P16989 MIF-203ENST00000498385 435 ntTSL 226.01■■□□□ 1.752e-20■■□□□ 13.8
YBX3P16989 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.692e-28■■□□□ 13.8
YBX3P16989 CNP-207ENST00000587679 581 ntTSL 431.31■■■□□ 2.67e-8■■□□□ 13.8
YBX3P16989 CNP-211ENST00000592446 587 ntTSL 431.31■■■□□ 2.67e-8■■□□□ 13.8
YBX3P16989 CNP-209ENST00000591945 576 ntTSL 330.65■■■□□ 2.57e-8■■□□□ 13.8
YBX3P16989 CNP-204ENST00000472031 1019 ntTSL 2 BASIC24.42■■□□□ 1.57e-8■■□□□ 13.8
YBX3P16989 CNP-203ENST00000441615 622 ntTSL 322.77■■□□□ 1.247e-8■■□□□ 13.8
YBX3P16989 MED20-207ENST00000482361 1481 ntTSL 217.77■□□□□ 0.447e-8■■□□□ 13.8
YBX3P16989 CNP-208ENST00000589772 516 ntTSL 417.42■□□□□ 0.387e-8■■□□□ 13.8
YBX3P16989 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.157e-8■■□□□ 13.8
YBX3P16989 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.017e-8■■□□□ 13.8
YBX3P16989 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.077e-8■■□□□ 13.8
YBX3P16989 MED20-206ENST00000467535 2602 ntTSL 212.89□□□□□ -0.357e-8■■□□□ 13.8
YBX3P16989 CNP-206ENST00000585452 689 ntTSL 212.65□□□□□ -0.387e-8■■□□□ 13.8
YBX3P16989 PGM3-205ENST00000506587 1971 ntTSL 2 BASIC11.76□□□□□ -0.535e-6■■□□□ 13.8
YBX3P16989 XPO7-206ENST00000519769 590 ntTSL 38.75□□□□□ -1.017e-8■■□□□ 13.8
YBX3P16989 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.425e-6■■□□□ 13.8
YBX3P16989 XPO7-207ENST00000520754 481 ntTSL 35.16□□□□□ -1.587e-8■■□□□ 13.8
YBX3P16989 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.322e-8■■□□□ 13.8
YBX3P16989 MRPS5-202ENST00000345084 1359 ntTSL 215.36■□□□□ 0.052e-8■■□□□ 13.8
YBX3P16989 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.47■■■□□ 2.312e-7■■□□□ 13.8
YBX3P16989 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.59■■■□□ 2.172e-7■■□□□ 13.8
YBX3P16989 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-7■■□□□ 13.8
YBX3P16989 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC16.59■□□□□ 0.252e-7■■□□□ 13.8
YBX3P16989 TRAF4-208ENST00000469529 788 ntTSL 215.55■□□□□ 0.082e-7■■□□□ 13.8
YBX3P16989 TRAF4-206ENST00000454852 672 ntTSL 313.72□□□□□ -0.212e-7■■□□□ 13.8
YBX3P16989 TUBB-205ENST00000327892 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.782e-37■■□□□ 13.8
YBX3P16989 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.13e-7■■□□□ 13.8
YBX3P16989 CNN2-209ENST00000568865 1332 ntTSL 524.57■■□□□ 1.526e-7■■□□□ 13.8
YBX3P16989 CLN6-222ENST00000637667 874 ntTSL 1 (best)27.17■■□□□ 1.941e-7■■□□□ 13.8
YBX3P16989 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.14■■□□□ 1.941e-7■■□□□ 13.8
YBX3P16989 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.74■■□□□ 1.871e-7■■□□□ 13.8
YBX3P16989 CLN6-213ENST00000636212 1053 ntTSL 525.26■■□□□ 1.631e-7■■□□□ 13.8
YBX3P16989 CLN6-221ENST00000637494 765 ntTSL 5 BASIC25.26■■□□□ 1.631e-7■■□□□ 13.8
YBX3P16989 CLN6-220ENST00000637450 868 ntTSL 325.22■■□□□ 1.631e-7■■□□□ 13.8
YBX3P16989 CLN6-204ENST00000564752 900 ntTSL 3 BASIC25.22■■□□□ 1.631e-7■■□□□ 13.8
YBX3P16989 CLN6-214ENST00000636314 442 ntTSL 3 BASIC25.08■■□□□ 1.611e-7■■□□□ 13.8
YBX3P16989 CLN6-210ENST00000635747 1181 ntTSL 524.18■■□□□ 1.461e-7■■□□□ 13.8
YBX3P16989 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.31e-7■■□□□ 13.8
YBX3P16989 CLN6-224ENST00000638076 2323 ntTSL 1 (best)22.97■■□□□ 1.271e-7■■□□□ 13.8
YBX3P16989 CLN6-218ENST00000637223 652 ntTSL 522.19■■□□□ 1.141e-7■■□□□ 13.8
YBX3P16989 CLN6-208ENST00000567060 945 ntTSL 222.17■■□□□ 1.141e-7■■□□□ 13.8
YBX3P16989 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.25■□□□□ 0.991e-7■■□□□ 13.8
YBX3P16989 CLN6-219ENST00000637329 1204 ntTSL 518.42■□□□□ 0.541e-7■■□□□ 13.8
YBX3P16989 AC107871.1-203ENST00000637054 3238 ntTSL 517.72■□□□□ 0.431e-7■■□□□ 13.8
YBX3P16989 AC107871.1-201ENST00000637888 2941 ntTSL 517.47■□□□□ 0.391e-7■■□□□ 13.8
YBX3P16989 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.361e-7■■□□□ 13.8
YBX3P16989 CLN6-225ENST00000638144 576 ntTSL 516.26■□□□□ 0.191e-7■■□□□ 13.8
YBX3P16989 CLN6-215ENST00000636674 2005 ntTSL 515.53■□□□□ 0.081e-7■■□□□ 13.8
YBX3P16989 CLN6-223ENST00000637823 717 ntTSL 513.86□□□□□ -0.191e-7■■□□□ 13.8
YBX3P16989 CLN6-203ENST00000563917 557 ntTSL 512.91□□□□□ -0.341e-7■■□□□ 13.8
YBX3P16989 CLN6-217ENST00000636964 3335 ntTSL 212.72□□□□□ -0.371e-7■■□□□ 13.8
YBX3P16989 YIPF2-211ENST00000592505 530 ntTSL 319.94■□□□□ 0.781e-7■■□□□ 13.8
YBX3P16989 RNH1-211ENST00000526295 488 ntTSL 316.12■□□□□ 0.177e-8■■□□□ 13.8
YBX3P16989 EVL-221ENST00000557023 507 ntTSL 213.86□□□□□ -0.197e-8■■□□□ 13.8
YBX3P16989 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC26.56■■□□□ 1.849e-15■■□□□ 13.8
YBX3P16989 YIF1B-205ENST00000585563 1118 ntTSL 323.2■■□□□ 1.39e-15■■□□□ 13.8
YBX3P16989 YIF1B-212ENST00000589644 1917 ntTSL 222.01■■□□□ 1.119e-15■■□□□ 13.8
YBX3P16989 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.85■■□□□ 1.099e-15■■□□□ 13.8
YBX3P16989 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.19■□□□□ 0.829e-15■■□□□ 13.8
YBX3P16989 YIF1B-211ENST00000589247 734 ntTSL 219.84■□□□□ 0.779e-15■■□□□ 13.8
YBX3P16989 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.77■□□□□ 0.769e-15■■□□□ 13.8
YBX3P16989 YIF1B-209ENST00000588002 575 ntTSL 519.77■□□□□ 0.769e-15■■□□□ 13.8
YBX3P16989 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.14e-6■■□□□ 13.8
Retrieved 100 of 29,075 protein–RNA pairs in 550.9 ms