RNA–Protein interactions for RNA: ENST00000565471.6

CLN6-206, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,075 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-206ENST00000565471 NISCHQ9Y2I1 1504 aa49.42■■■■■ 5.5
CLN6-206ENST00000565471 CCDC180Q9P1Z9 1646 aa44.24■■■■■ 4.67
CLN6-206ENST00000565471 ABCC9O60706 1549 aa43.82■■■■■ 4.61
CLN6-206ENST00000565471 RB1CC1Q8TDY2 1594 aa41.93■■■■■ 4.3
CLN6-206ENST00000565471 NACADO15069 1562 aa41.74■■■■■ 4.27
CLN6-206ENST00000565471 DCAF8L2P0C7V8 631 aa41.43■■■■■ 4.22
CLN6-206ENST00000565471 MYO15BQ96JP2 1530 aa41.33■■■■■ 4.21
CLN6-206ENST00000565471 ZCCHC6Q5VYS8 1495 aaKnown RBP41.04■■■■■ 4.16
CLN6-206ENST00000565471 UNC13AQ9UPW8 1703 aa40.94■■■■■ 4.14
CLN6-206ENST00000565471 DCAF1Q9Y4B6 1507 aa40.9■■■■■ 4.14
CLN6-206ENST00000565471 PABPN1Q86U42 306 aaKnown RBP eCLIP40.81■■■■■ 4.12
CLN6-206ENST00000565471 DNAJC5BQ9UF47 199 aa40.77■■■■■ 4.12
CLN6-206ENST00000565471 BICRAQ9NZM4 1560 aa40.67■■■■■ 4.1
CLN6-206ENST00000565471 SHROOM4Q9ULL8 1493 aa40.26■■■■■ 4.03
CLN6-206ENST00000565471 SCRIBQ14160 1630 aa40.25■■■■■ 4.03
CLN6-206ENST00000565471 EIF4G1Q04637 1599 aaKnown RBP39.65■■■■□ 3.94
CLN6-206ENST00000565471 CC2D2AQ9P2K1 1620 aa39.64■■■■□ 3.94
CLN6-206ENST00000565471 CECR2Q9BXF3 1484 aa39.47■■■■□ 3.91
CLN6-206ENST00000565471 NCAPD3P42695 1498 aa38.52■■■■□ 3.76
CLN6-206ENST00000565471 SMARCA4P51532 1647 aa38.48■■■■□ 3.75
CLN6-206ENST00000565471 ATAD2BQ9ULI0 1458 aa38.43■■■■□ 3.74
CLN6-206ENST00000565471 SMARCA2P51531 1590 aa38.36■■■■□ 3.73
CLN6-206ENST00000565471 BAZ1AQ9NRL2 1556 aaPredicted RBP38.36■■■■□ 3.73
CLN6-206ENST00000565471 HMGXB3Q12766 1538 aa38.28■■■■□ 3.72
CLN6-206ENST00000565471 PEG3Q9GZU2 1588 aa38.15■■■■□ 3.7
CLN6-206ENST00000565471 BAZ1BQ9UIG0 1483 aaKnown RBP38.07■■■■□ 3.68
CLN6-206ENST00000565471 MROH2BQ7Z745 1585 aa38.05■■■■□ 3.68
CLN6-206ENST00000565471 ERCC6Q03468 1493 aa37.83■■■■□ 3.65
CLN6-206ENST00000565471 NESP48681 1621 aa37.73■■■■□ 3.63
CLN6-206ENST00000565471 CUX2O14529 1486 aa37.71■■■■□ 3.63
CLN6-206ENST00000565471 WIZO95785 1651 aa37.6■■■■□ 3.61
CLN6-206ENST00000565471 LAMC3Q9Y6N6 1575 aa37.6■■■■□ 3.61
CLN6-206ENST00000565471 RSF1Q96T23 1441 aaPredicted RBP37.4■■■■□ 3.58
CLN6-206ENST00000565471 PDS5BQ9NTI5 1447 aa37.36■■■■□ 3.57
CLN6-206ENST00000565471 THOC2Q8NI27 1593 aaKnown RBP37.34■■■■□ 3.57
CLN6-206ENST00000565471 CADPSQ9ULU8 1353 aa37.34■■■■□ 3.57
CLN6-206ENST00000565471 KIF21AQ7Z4S6 1674 aa37.28■■■■□ 3.56
CLN6-206ENST00000565471 DNAJC5Q9H3Z4 198 aa37.24■■■■□ 3.55
CLN6-206ENST00000565471 TOP2AP11388 1531 aaKnown RBP37.2■■■■□ 3.55
CLN6-206ENST00000565471 MRC2Q9UBG0 1479 aa37.01■■■■□ 3.52
CLN6-206ENST00000565471 CFTRP13569 1480 aa37.01■■■■□ 3.51
CLN6-206ENST00000565471 WDR62O43379 1518 aa36.93■■■■□ 3.5
CLN6-206ENST00000565471 CEP164Q9UPV0 1460 aa36.93■■■■□ 3.5
CLN6-206ENST00000565471 FANCD2Q9BXW9 1451 aa36.91■■■■□ 3.5
CLN6-206ENST00000565471 CCDC88BA6NC98 1476 aa36.74■■■■□ 3.47
CLN6-206ENST00000565471 PRDM2Q13029 1718 aa36.68■■■■□ 3.46
CLN6-206ENST00000565471 URB2Q14146 1524 aaKnown RBP36.58■■■■□ 3.45
CLN6-206ENST00000565471 TOPBP1Q92547 1522 aa36.26■■■■□ 3.4
CLN6-206ENST00000565471 ABCC8Q09428 1581 aa36.24■■■■□ 3.39
CLN6-206ENST00000565471 IFT140Q96RY7 1462 aa36.19■■■■□ 3.38
CLN6-206ENST00000565471 DNMBPQ6XZF7 1577 aa36.17■■■■□ 3.38
CLN6-206ENST00000565471 ZNF608Q9ULD9 1512 aaPredicted RBP36.05■■■■□ 3.36
CLN6-206ENST00000565471 OSCARQ8IYS5 282 aa35.98■■■■□ 3.35
CLN6-206ENST00000565471 TARBP1Q13395 1621 aaKnown RBP35.91■■■■□ 3.34
CLN6-206ENST00000565471 EIF4G3O43432 1585 aaKnown RBP35.9■■■■□ 3.34
CLN6-206ENST00000565471 SUPT5HO00267 1087 aaKnown RBP35.9■■■■□ 3.34
CLN6-206ENST00000565471 POLA1P09884 1462 aaPredicted RBP35.9■■■■□ 3.34
CLN6-206ENST00000565471 AQRO60306 1485 aaKnown RBP eCLIP35.76■■■■□ 3.322e-7■■■■□ 23.4
CLN6-206ENST00000565471 CUX1P39880 1505 aa35.74■■■■□ 3.31
CLN6-206ENST00000565471 SOGA1O94964 1423 aa35.73■■■■□ 3.31
CLN6-206ENST00000565471 RAD54L2Q9Y4B4 1467 aa35.73■■■■□ 3.31
CLN6-206ENST00000565471 FGD5Q6ZNL6 1462 aa35.72■■■■□ 3.31
CLN6-206ENST00000565471 TRIM41Q8WV44 630 aa35.68■■■■□ 3.3
CLN6-206ENST00000565471 WDR97A6NE52 1622 aa35.64■■■■□ 3.3
CLN6-206ENST00000565471 TDRD9Q8NDG6 1382 aaKnown RBP35.59■■■■□ 3.29
CLN6-206ENST00000565471 CHD1O14646 1710 aa35.55■■■■□ 3.28
CLN6-206ENST00000565471 RIMBP3CA6NJZ7 1639 aa35.48■■■■□ 3.27
CLN6-206ENST00000565471 RIMBP3BA6NNM3 1639 aa35.48■■■■□ 3.27
CLN6-206ENST00000565471 RIMBP3Q9UFD9 1639 aa35.48■■■■□ 3.27
CLN6-206ENST00000565471 SNAPC4Q5SXM2 1469 aa35.43■■■■□ 3.26
CLN6-206ENST00000565471 ARHGEF11O15085 1522 aa35.42■■■■□ 3.26
CLN6-206ENST00000565471 FBLN2P98095 1184 aa35.41■■■■□ 3.26
CLN6-206ENST00000565471 GRIN2BQ13224 1484 aa35.41■■■■□ 3.26
CLN6-206ENST00000565471 MAGI1Q96QZ7 1491 aaPredicted RBP35.4■■■■□ 3.26
CLN6-206ENST00000565471 ABCA10Q8WWZ4 1543 aa35.37■■■■□ 3.25
CLN6-206ENST00000565471 GAPVD1Q14C86 1478 aa35.32■■■■□ 3.24
CLN6-206ENST00000565471 BIVM-ERCC5R4GMW8 1640 aa35.29■■■■□ 3.24
CLN6-206ENST00000565471 TOP2BQ02880 1626 aa35.28■■■■□ 3.24
CLN6-206ENST00000565471 ABCA5Q8WWZ7 1642 aa35.28■■■■□ 3.24
CLN6-206ENST00000565471 PBRM1Q86U86 1689 aa35.28■■■■□ 3.24
CLN6-206ENST00000565471 WRNQ14191 1432 aaPredicted RBP eCLIP35.28■■■■□ 3.241e-9■■■■■ 46
CLN6-206ENST00000565471 SYNJ2O15056 1496 aa35.26■■■■□ 3.23
CLN6-206ENST00000565471 CHMP7Q8WUX9 453 aaPredicted RBP35.25■■■■□ 3.23
CLN6-206ENST00000565471 SYNJ1O43426 1573 aa35.22■■■■□ 3.23
CLN6-206ENST00000565471 CLASP1Q7Z460 1538 aa35.19■■■■□ 3.22
CLN6-206ENST00000565471 ARAP1Q96P48 1450 aa35.09■■■■□ 3.21
CLN6-206ENST00000565471 CYB5RLQ6IPT4 315 aa35.07■■■■□ 3.2
CLN6-206ENST00000565471 ADAMTS12P58397 1594 aa34.99■■■■□ 3.19
CLN6-206ENST00000565471 GRIN2AQ12879 1464 aa34.95■■■■□ 3.19
CLN6-206ENST00000565471 ERICH3Q5RHP9 1530 aa34.94■■■■□ 3.18
CLN6-206ENST00000565471 FHAD1B1AJZ9 1412 aa34.89■■■■□ 3.18
CLN6-206ENST00000565471 NUP160Q12769 1436 aa34.84■■■■□ 3.17
CLN6-206ENST00000565471 CEP170Q5SW79 1584 aa34.79■■■■□ 3.16
CLN6-206ENST00000565471 SHROOM2Q13796 1616 aa34.66■■■■□ 3.14
CLN6-206ENST00000565471 ERCC6L2Q5T890 1561 aa34.61■■■■□ 3.13
CLN6-206ENST00000565471 KIF27Q86VH2 1401 aa34.6■■■■□ 3.13
CLN6-206ENST00000565471 TRHP20396 242 aaPredicted RBP34.57■■■■□ 3.12
CLN6-206ENST00000565471 IGF1RP08069 1367 aa34.52■■■■□ 3.12
CLN6-206ENST00000565471 CUL7Q14999 1698 aa34.5■■■■□ 3.11
CLN6-206ENST00000565471 RUSC2Q8N2Y8 1516 aa34.49■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms