RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 NISCHQ9Y2I1 1504 aa46.69■■■■■ 5.06
CLN6-201ENST00000249806 CCDC180Q9P1Z9 1646 aa40.03■■■■■ 4
CLN6-201ENST00000249806 ZCCHC6Q5VYS8 1495 aaKnown RBP39.36■■■■□ 3.89
CLN6-201ENST00000249806 SHROOM4Q9ULL8 1493 aa39.22■■■■□ 3.87
CLN6-201ENST00000249806 DCAF8L2P0C7V8 631 aa38.78■■■■□ 3.8
CLN6-201ENST00000249806 DCAF1Q9Y4B6 1507 aa38.36■■■■□ 3.73
CLN6-201ENST00000249806 SUPT5HO00267 1087 aaKnown RBP38.19■■■■□ 3.7
CLN6-201ENST00000249806 ABCC9O60706 1549 aa37.5■■■■□ 3.59
CLN6-201ENST00000249806 MYO15BQ96JP2 1530 aa37.5■■■■□ 3.59
CLN6-201ENST00000249806 SCRIBQ14160 1630 aa37.32■■■■□ 3.57
CLN6-201ENST00000249806 NACADO15069 1562 aa37.14■■■■□ 3.54
CLN6-201ENST00000249806 CHIC1Q5VXU3 224 aa36.89■■■■□ 3.5
CLN6-201ENST00000249806 RSF1Q96T23 1441 aaPredicted RBP36.68■■■■□ 3.46
CLN6-201ENST00000249806 RB1CC1Q8TDY2 1594 aa36.66■■■■□ 3.46
CLN6-201ENST00000249806 CECR2Q9BXF3 1484 aa36.42■■■■□ 3.42
CLN6-201ENST00000249806 MROH2BQ7Z745 1585 aa36.24■■■■□ 3.39
CLN6-201ENST00000249806 UNC13AQ9UPW8 1703 aa36.11■■■■□ 3.37
CLN6-201ENST00000249806 WIZO95785 1651 aa36.02■■■■□ 3.36
CLN6-201ENST00000249806 BAZ1AQ9NRL2 1556 aaPredicted RBP35.9■■■■□ 3.34
CLN6-201ENST00000249806 LOC105371045A0A1W2PR82 267 aa35.73■■■■□ 3.31
CLN6-201ENST00000249806 PABPN1Q86U42 306 aaKnown RBP eCLIP35.72■■■■□ 3.31
CLN6-201ENST00000249806 SMARCA4P51532 1647 aa35.68■■■■□ 3.3
CLN6-201ENST00000249806 BICRAQ9NZM4 1560 aa35.67■■■■□ 3.3
CLN6-201ENST00000249806 TRIM41Q8WV44 630 aa35.67■■■■□ 3.3
CLN6-201ENST00000249806 TOP2AP11388 1531 aaKnown RBP35.46■■■■□ 3.27
CLN6-201ENST00000249806 CCDC88BA6NC98 1476 aa35.29■■■■□ 3.24
CLN6-201ENST00000249806 FAM9AQ8IZU1 332 aaPredicted RBP35.29■■■■□ 3.24
CLN6-201ENST00000249806 EIF4G1Q04637 1599 aaKnown RBP35.26■■■■□ 3.24
CLN6-201ENST00000249806 SMARCA2P51531 1590 aa35.24■■■■□ 3.23
CLN6-201ENST00000249806 PEG3Q9GZU2 1588 aa35.07■■■■□ 3.2
CLN6-201ENST00000249806 PCGF6Q9BYE7 350 aa35.05■■■■□ 3.2
CLN6-201ENST00000249806 ABCC8Q09428 1581 aa34.96■■■■□ 3.19
CLN6-201ENST00000249806 EHMT2Q96KQ7 1210 aa34.96■■■■□ 3.19
CLN6-201ENST00000249806 ATAD2BQ9ULI0 1458 aa34.92■■■■□ 3.18
CLN6-201ENST00000249806 BAZ1BQ9UIG0 1483 aaKnown RBP34.77■■■■□ 3.16
CLN6-201ENST00000249806 HRCP23327 699 aa34.63■■■■□ 3.13
CLN6-201ENST00000249806 TRIM26Q12899 539 aaPredicted RBP34.58■■■■□ 3.13
CLN6-201ENST00000249806 SOGA1O94964 1423 aa34.51■■■■□ 3.12
CLN6-201ENST00000249806 WRNQ14191 1432 aaPredicted RBP eCLIP34.47■■■■□ 3.111e-9■■■■■ 46
CLN6-201ENST00000249806 RUSC2Q8N2Y8 1516 aa34.38■■■■□ 3.09
CLN6-201ENST00000249806 NCAPD3P42695 1498 aa34.37■■■■□ 3.09
CLN6-201ENST00000249806 SYNJ1O43426 1573 aa34.33■■■■□ 3.09
CLN6-201ENST00000249806 HMGXB3Q12766 1538 aa34.31■■■■□ 3.08
CLN6-201ENST00000249806 CSRNP3Q8WYN3 585 aa34.28■■■■□ 3.08
CLN6-201ENST00000249806 EEA1Q15075 1411 aa34.27■■■■□ 3.08
CLN6-201ENST00000249806 PPARGC1BQ86YN6 1023 aaKnown RBP34.11■■■■□ 3.05
CLN6-201ENST00000249806 TNIKQ9UKE5 1360 aa34.08■■■■□ 3.05
CLN6-201ENST00000249806 UBTFP17480 764 aaKnown RBP34.06■■■■□ 3.04
CLN6-201ENST00000249806 CEP162Q5TB80 1403 aa34.05■■■■□ 3.04
CLN6-201ENST00000249806 TOP2BQ02880 1626 aa33.99■■■■□ 3.03
CLN6-201ENST00000249806 GOLGA3Q08378 1498 aa33.98■■■■□ 3.03
CLN6-201ENST00000249806 CFTRP13569 1480 aa33.91■■■■□ 3.02
CLN6-201ENST00000249806 BIVM-ERCC5R4GMW8 1640 aa33.88■■■■□ 3.01
CLN6-201ENST00000249806 CEP164Q9UPV0 1460 aa33.86■■■■□ 3.01
CLN6-201ENST00000249806 KIF21BO75037 1637 aa33.83■■■■□ 3.01
CLN6-201ENST00000249806 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3
CLN6-201ENST00000249806 CUX1P39880 1505 aa33.78■■■■□ 3
CLN6-201ENST00000249806 RAPGEF2Q9Y4G8 1499 aa33.71■■■□□ 2.99
CLN6-201ENST00000249806 TTBK1Q5TCY1 1321 aaPredicted RBP33.66■■■□□ 2.98
CLN6-201ENST00000249806 CADPSQ9ULU8 1353 aa33.65■■■□□ 2.98
CLN6-201ENST00000249806 PRDM2Q13029 1718 aa33.63■■■□□ 2.97
CLN6-201ENST00000249806 CLIP1P30622 1438 aa33.56■■■□□ 2.96
CLN6-201ENST00000249806 ZEB1P37275 1124 aaPredicted RBP33.52■■■□□ 2.96
CLN6-201ENST00000249806 RANGAP1P46060 587 aaPredicted RBP33.48■■■□□ 2.95
CLN6-201ENST00000249806 PRXQ9BXM0 1461 aa33.48■■■□□ 2.95
CLN6-201ENST00000249806 KIF27Q86VH2 1401 aa33.47■■■□□ 2.95
CLN6-201ENST00000249806 ERICH3Q5RHP9 1530 aa33.41■■■□□ 2.94
CLN6-201ENST00000249806 VPS8Q8N3P4 1428 aa33.34■■■□□ 2.93
CLN6-201ENST00000249806 FANCD2Q9BXW9 1451 aa33.3■■■□□ 2.92
CLN6-201ENST00000249806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.3■■■□□ 2.92
CLN6-201ENST00000249806 FGD5Q6ZNL6 1462 aa33.27■■■□□ 2.92
CLN6-201ENST00000249806 CUX2O14529 1486 aa33.26■■■□□ 2.92
CLN6-201ENST00000249806 NESP48681 1621 aa33.25■■■□□ 2.91
CLN6-201ENST00000249806 IGF1RP08069 1367 aa33.18■■■□□ 2.9
CLN6-201ENST00000249806 CCER1Q8TC90 406 aaPredicted RBP33.17■■■□□ 2.9
CLN6-201ENST00000249806 APLP2Q06481 763 aa33.14■■■□□ 2.9
CLN6-201ENST00000249806 DNAJC5BQ9UF47 199 aa33.1■■■□□ 2.89
CLN6-201ENST00000249806 ARAP1Q96P48 1450 aa33.1■■■□□ 2.89
CLN6-201ENST00000249806 DNMBPQ6XZF7 1577 aa33.06■■■□□ 2.88
CLN6-201ENST00000249806 TOPBP1Q92547 1522 aa33.02■■■□□ 2.88
CLN6-201ENST00000249806 CARMIL1Q5VZK9 1371 aa33.01■■■□□ 2.88
CLN6-201ENST00000249806 RAD54L2Q9Y4B4 1467 aa33■■■□□ 2.87
CLN6-201ENST00000249806 LAMC3Q9Y6N6 1575 aa33■■■□□ 2.87
CLN6-201ENST00000249806 POLA1P09884 1462 aaPredicted RBP32.97■■■□□ 2.87
CLN6-201ENST00000249806 ARHGAP35Q9NRY4 1499 aa32.94■■■□□ 2.86
CLN6-201ENST00000249806 HNRNPUL2Q1KMD3 747 aaKnown RBP32.9■■■□□ 2.86
CLN6-201ENST00000249806 ABCA10Q8WWZ4 1543 aa32.89■■■□□ 2.86
CLN6-201ENST00000249806 URB2Q14146 1524 aaKnown RBP32.86■■■□□ 2.85
CLN6-201ENST00000249806 KANK4Q5T7N3 995 aaPredicted RBP32.84■■■□□ 2.85
CLN6-201ENST00000249806 PDS5BQ9NTI5 1447 aa32.79■■■□□ 2.84
CLN6-201ENST00000249806 KIF21AQ7Z4S6 1674 aa32.7■■■□□ 2.83
CLN6-201ENST00000249806 WDR97A6NE52 1622 aa32.65■■■□□ 2.82
CLN6-201ENST00000249806 TDRD9Q8NDG6 1382 aaKnown RBP32.64■■■□□ 2.82
CLN6-201ENST00000249806 CUL7Q14999 1698 aa32.61■■■□□ 2.81
CLN6-201ENST00000249806 P3H3Q8IVL6 736 aa32.59■■■□□ 2.81
CLN6-201ENST00000249806 ABCA5Q8WWZ7 1642 aa32.53■■■□□ 2.8
CLN6-201ENST00000249806 GAPVD1Q14C86 1478 aa32.51■■■□□ 2.8
CLN6-201ENST00000249806 RRBP1Q9P2E9 1410 aaKnown RBP32.48■■■□□ 2.79
CLN6-201ENST00000249806 TIAM1Q13009 1591 aa32.46■■■□□ 2.79
CLN6-201ENST00000249806 CTTNBP2Q8WZ74 1663 aa32.45■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms