RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 NISCHQ9Y2I1 1504 aa40.93■■■■■ 4.14
CLN6-202ENST00000538696 CCDC180Q9P1Z9 1646 aa36.22■■■■□ 3.39
CLN6-202ENST00000538696 ABCC9O60706 1549 aa34.82■■■■□ 3.16
CLN6-202ENST00000538696 ZCCHC6Q5VYS8 1495 aaKnown RBP34.24■■■■□ 3.07
CLN6-202ENST00000538696 DCAF1Q9Y4B6 1507 aa33.89■■■■□ 3.02
CLN6-202ENST00000538696 NACADO15069 1562 aa33.84■■■■□ 3.01
CLN6-202ENST00000538696 DCAF8L2P0C7V8 631 aa33.81■■■■□ 3
CLN6-202ENST00000538696 MYO15BQ96JP2 1530 aa33.81■■■■□ 3
CLN6-202ENST00000538696 RB1CC1Q8TDY2 1594 aa33.75■■■□□ 2.99
CLN6-202ENST00000538696 UNC13AQ9UPW8 1703 aa33.15■■■□□ 2.9
CLN6-202ENST00000538696 SCRIBQ14160 1630 aa33.08■■■□□ 2.89
CLN6-202ENST00000538696 BICRAQ9NZM4 1560 aa32.76■■■□□ 2.84
CLN6-202ENST00000538696 SHROOM4Q9ULL8 1493 aa32.63■■■□□ 2.81
CLN6-202ENST00000538696 PABPN1Q86U42 306 aaKnown RBP eCLIP32.56■■■□□ 2.8
CLN6-202ENST00000538696 EIF4G1Q04637 1599 aaKnown RBP31.83■■■□□ 2.69
CLN6-202ENST00000538696 CECR2Q9BXF3 1484 aa31.82■■■□□ 2.69
CLN6-202ENST00000538696 BAZ1AQ9NRL2 1556 aaPredicted RBP31.68■■■□□ 2.66
CLN6-202ENST00000538696 SMARCA4P51532 1647 aa31.68■■■□□ 2.66
CLN6-202ENST00000538696 MROH2BQ7Z745 1585 aa31.57■■■□□ 2.64
CLN6-202ENST00000538696 CC2D2AQ9P2K1 1620 aa31.57■■■□□ 2.64
CLN6-202ENST00000538696 DNAJC5BQ9UF47 199 aa31.41■■■□□ 2.62
CLN6-202ENST00000538696 RSF1Q96T23 1441 aaPredicted RBP31.37■■■□□ 2.61
CLN6-202ENST00000538696 PEG3Q9GZU2 1588 aa31.35■■■□□ 2.61
CLN6-202ENST00000538696 ATAD2BQ9ULI0 1458 aa31.31■■■□□ 2.6
CLN6-202ENST00000538696 SMARCA2P51531 1590 aa31.31■■■□□ 2.6
CLN6-202ENST00000538696 WIZO95785 1651 aa31.3■■■□□ 2.6
CLN6-202ENST00000538696 NCAPD3P42695 1498 aa31.18■■■□□ 2.58
CLN6-202ENST00000538696 HMGXB3Q12766 1538 aa31.14■■■□□ 2.58
CLN6-202ENST00000538696 BAZ1BQ9UIG0 1483 aaKnown RBP31.08■■■□□ 2.57
CLN6-202ENST00000538696 TOP2AP11388 1531 aaKnown RBP30.97■■■□□ 2.55
CLN6-202ENST00000538696 SUPT5HO00267 1087 aaKnown RBP30.92■■■□□ 2.54
CLN6-202ENST00000538696 CCDC88BA6NC98 1476 aa30.56■■■□□ 2.48
CLN6-202ENST00000538696 NESP48681 1621 aa30.32■■■□□ 2.44
CLN6-202ENST00000538696 LAMC3Q9Y6N6 1575 aa30.32■■■□□ 2.44
CLN6-202ENST00000538696 CADPSQ9ULU8 1353 aa30.28■■■□□ 2.44
CLN6-202ENST00000538696 CFTRP13569 1480 aa30.26■■■□□ 2.43
CLN6-202ENST00000538696 PRDM2Q13029 1718 aa30.24■■■□□ 2.43
CLN6-202ENST00000538696 KIF21AQ7Z4S6 1674 aa30.07■■■□□ 2.4
CLN6-202ENST00000538696 PDS5BQ9NTI5 1447 aa30.01■■■□□ 2.4
CLN6-202ENST00000538696 FANCD2Q9BXW9 1451 aa29.98■■■□□ 2.39
CLN6-202ENST00000538696 ERCC6Q03468 1493 aa29.94■■■□□ 2.38
CLN6-202ENST00000538696 CEP164Q9UPV0 1460 aa29.89■■■□□ 2.38
CLN6-202ENST00000538696 THOC2Q8NI27 1593 aaKnown RBP29.81■■■□□ 2.36
CLN6-202ENST00000538696 MRC2Q9UBG0 1479 aa29.74■■■□□ 2.35
CLN6-202ENST00000538696 URB2Q14146 1524 aaKnown RBP29.69■■■□□ 2.34
CLN6-202ENST00000538696 ABCC8Q09428 1581 aa29.67■■■□□ 2.34
CLN6-202ENST00000538696 WDR62O43379 1518 aa29.66■■■□□ 2.34
CLN6-202ENST00000538696 DNMBPQ6XZF7 1577 aa29.62■■■□□ 2.33
CLN6-202ENST00000538696 CUX1P39880 1505 aa29.59■■■□□ 2.33
CLN6-202ENST00000538696 TOPBP1Q92547 1522 aa29.59■■■□□ 2.33
CLN6-202ENST00000538696 WRNQ14191 1432 aaPredicted RBP eCLIP29.55■■■□□ 2.321e-9■■■■■ 46
CLN6-202ENST00000538696 SYNJ1O43426 1573 aa29.54■■■□□ 2.32
CLN6-202ENST00000538696 BIVM-ERCC5R4GMW8 1640 aa29.52■■■□□ 2.32
CLN6-202ENST00000538696 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
CLN6-202ENST00000538696 CUX2O14529 1486 aa29.44■■■□□ 2.3
CLN6-202ENST00000538696 FGD5Q6ZNL6 1462 aa29.39■■■□□ 2.29
CLN6-202ENST00000538696 POLA1P09884 1462 aaPredicted RBP29.37■■■□□ 2.29
CLN6-202ENST00000538696 TARBP1Q13395 1621 aaKnown RBP29.26■■■□□ 2.28
CLN6-202ENST00000538696 IFT140Q96RY7 1462 aa29.24■■■□□ 2.27
CLN6-202ENST00000538696 RAD54L2Q9Y4B4 1467 aa29.23■■■□□ 2.27
CLN6-202ENST00000538696 WDR97A6NE52 1622 aa29.23■■■□□ 2.27
CLN6-202ENST00000538696 SOGA1O94964 1423 aa29.2■■■□□ 2.26
CLN6-202ENST00000538696 CHIC1Q5VXU3 224 aa29.2■■■□□ 2.26
CLN6-202ENST00000538696 TRIM41Q8WV44 630 aa29.15■■■□□ 2.26
CLN6-202ENST00000538696 ABCA10Q8WWZ4 1543 aa29.12■■■□□ 2.25
CLN6-202ENST00000538696 ZNF608Q9ULD9 1512 aaPredicted RBP29.08■■■□□ 2.25
CLN6-202ENST00000538696 EIF4G3O43432 1585 aaKnown RBP29.06■■■□□ 2.24
CLN6-202ENST00000538696 ABCA5Q8WWZ7 1642 aa29.02■■■□□ 2.24
CLN6-202ENST00000538696 TDRD9Q8NDG6 1382 aaKnown RBP28.97■■■□□ 2.23
CLN6-202ENST00000538696 AQRO60306 1485 aaKnown RBP eCLIP28.95■■■□□ 2.232e-7■■■■□ 23.4
CLN6-202ENST00000538696 PBRM1Q86U86 1689 aa28.94■■■□□ 2.22
CLN6-202ENST00000538696 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
CLN6-202ENST00000538696 KIF27Q86VH2 1401 aa28.87■■■□□ 2.21
CLN6-202ENST00000538696 RUSC2Q8N2Y8 1516 aa28.84■■■□□ 2.21
CLN6-202ENST00000538696 GRIN2BQ13224 1484 aa28.82■■■□□ 2.2
CLN6-202ENST00000538696 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
CLN6-202ENST00000538696 SNAPC4Q5SXM2 1469 aa28.75■■■□□ 2.19
CLN6-202ENST00000538696 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
CLN6-202ENST00000538696 MAGI1Q96QZ7 1491 aaPredicted RBP28.7■■■□□ 2.18
CLN6-202ENST00000538696 EEA1Q15075 1411 aa28.69■■■□□ 2.18
CLN6-202ENST00000538696 IGF1RP08069 1367 aa28.67■■■□□ 2.18
CLN6-202ENST00000538696 CUL7Q14999 1698 aa28.67■■■□□ 2.18
CLN6-202ENST00000538696 CHD1O14646 1710 aa28.62■■■□□ 2.17
CLN6-202ENST00000538696 FHAD1B1AJZ9 1412 aa28.58■■■□□ 2.17
CLN6-202ENST00000538696 SYNJ2O15056 1496 aa28.57■■■□□ 2.16
CLN6-202ENST00000538696 FAM9AQ8IZU1 332 aaPredicted RBP28.56■■■□□ 2.16
CLN6-202ENST00000538696 CSRNP3Q8WYN3 585 aa28.51■■■□□ 2.15
CLN6-202ENST00000538696 CARMIL1Q5VZK9 1371 aa28.51■■■□□ 2.15
CLN6-202ENST00000538696 PRXQ9BXM0 1461 aa28.49■■■□□ 2.15
CLN6-202ENST00000538696 GRIN2AQ12879 1464 aa28.47■■■□□ 2.15
CLN6-202ENST00000538696 KIF21BO75037 1637 aa28.44■■■□□ 2.14
CLN6-202ENST00000538696 RAPGEF2Q9Y4G8 1499 aa28.44■■■□□ 2.14
CLN6-202ENST00000538696 CHMP7Q8WUX9 453 aaPredicted RBP28.43■■■□□ 2.14
CLN6-202ENST00000538696 FBLN2P98095 1184 aa28.42■■■□□ 2.14
CLN6-202ENST00000538696 CEP170Q5SW79 1584 aa28.36■■■□□ 2.13
CLN6-202ENST00000538696 NUP160Q12769 1436 aa28.32■■■□□ 2.12
CLN6-202ENST00000538696 CTTNBP2Q8WZ74 1663 aa28.27■■■□□ 2.12
CLN6-202ENST00000538696 GOLGA3Q08378 1498 aa28.26■■■□□ 2.12
CLN6-202ENST00000538696 CLASP1Q7Z460 1538 aa28.26■■■□□ 2.11
CLN6-202ENST00000538696 OSCARQ8IYS5 282 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms