RNA–Protein interactions for RNA: ENST00000563917.2

CLN6-203, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-203ENST00000563917 NISCHQ9Y2I1 1504 aa23.58■■□□□ 1.36
CLN6-203ENST00000563917 CCDC180Q9P1Z9 1646 aa21.14■□□□□ 0.97
CLN6-203ENST00000563917 ABCC9O60706 1549 aa21.09■□□□□ 0.97
CLN6-203ENST00000563917 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
CLN6-203ENST00000563917 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
CLN6-203ENST00000563917 NACADO15069 1562 aa20■□□□□ 0.79
CLN6-203ENST00000563917 MYO15BQ96JP2 1530 aa19.71■□□□□ 0.75
CLN6-203ENST00000563917 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLN6-203ENST00000563917 DNAJC5BQ9UF47 199 aa19.64■□□□□ 0.73
CLN6-203ENST00000563917 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
CLN6-203ENST00000563917 ZCCHC6Q5VYS8 1495 aaKnown RBP19.54■□□□□ 0.72
CLN6-203ENST00000563917 DCAF1Q9Y4B6 1507 aa19.48■□□□□ 0.71
CLN6-203ENST00000563917 BICRAQ9NZM4 1560 aa19.43■□□□□ 0.7
CLN6-203ENST00000563917 SHROOM4Q9ULL8 1493 aa19.28■□□□□ 0.68
CLN6-203ENST00000563917 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
CLN6-203ENST00000563917 CC2D2AQ9P2K1 1620 aa19.03■□□□□ 0.64
CLN6-203ENST00000563917 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
CLN6-203ENST00000563917 EIF4G1Q04637 1599 aaKnown RBP19.01■□□□□ 0.63
CLN6-203ENST00000563917 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
CLN6-203ENST00000563917 SMARCA2P51531 1590 aa18.39■□□□□ 0.53
CLN6-203ENST00000563917 ATAD2BQ9ULI0 1458 aa18.38■□□□□ 0.53
CLN6-203ENST00000563917 SMARCA4P51532 1647 aa18.38■□□□□ 0.53
CLN6-203ENST00000563917 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
CLN6-203ENST00000563917 HMGXB3Q12766 1538 aa18.31■□□□□ 0.52
CLN6-203ENST00000563917 ERCC6Q03468 1493 aa18.29■□□□□ 0.52
CLN6-203ENST00000563917 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
CLN6-203ENST00000563917 CUX2O14529 1486 aa18.18■□□□□ 0.5
CLN6-203ENST00000563917 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
CLN6-203ENST00000563917 MROH2BQ7Z745 1585 aa18.14■□□□□ 0.49
CLN6-203ENST00000563917 NESP48681 1621 aa18.09■□□□□ 0.49
CLN6-203ENST00000563917 DNAJC5Q9H3Z4 198 aa18.08■□□□□ 0.48
CLN6-203ENST00000563917 LAMC3Q9Y6N6 1575 aa18.04■□□□□ 0.48
CLN6-203ENST00000563917 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
CLN6-203ENST00000563917 WIZO95785 1651 aa17.93■□□□□ 0.46
CLN6-203ENST00000563917 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
CLN6-203ENST00000563917 THOC2Q8NI27 1593 aaKnown RBP17.88■□□□□ 0.45
CLN6-203ENST00000563917 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
CLN6-203ENST00000563917 RSF1Q96T23 1441 aaPredicted RBP17.81■□□□□ 0.44
CLN6-203ENST00000563917 MRC2Q9UBG0 1479 aa17.77■□□□□ 0.44
CLN6-203ENST00000563917 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
CLN6-203ENST00000563917 CEP164Q9UPV0 1460 aa17.74■□□□□ 0.43
CLN6-203ENST00000563917 FANCD2Q9BXW9 1451 aa17.7■□□□□ 0.42
CLN6-203ENST00000563917 WDR62O43379 1518 aa17.69■□□□□ 0.42
CLN6-203ENST00000563917 CFTRP13569 1480 aa17.69■□□□□ 0.42
CLN6-203ENST00000563917 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
CLN6-203ENST00000563917 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
CLN6-203ENST00000563917 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
CLN6-203ENST00000563917 OSCARQ8IYS5 282 aa17.42■□□□□ 0.38
CLN6-203ENST00000563917 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
CLN6-203ENST00000563917 TRIM41Q8WV44 630 aa17.38■□□□□ 0.37
CLN6-203ENST00000563917 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
CLN6-203ENST00000563917 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
CLN6-203ENST00000563917 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
CLN6-203ENST00000563917 ZNF608Q9ULD9 1512 aaPredicted RBP17.27■□□□□ 0.36
CLN6-203ENST00000563917 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
CLN6-203ENST00000563917 SUPT5HO00267 1087 aaKnown RBP17.18■□□□□ 0.34
CLN6-203ENST00000563917 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
CLN6-203ENST00000563917 TARBP1Q13395 1621 aaKnown RBP17.15■□□□□ 0.34
CLN6-203ENST00000563917 FBLN2P98095 1184 aa17.15■□□□□ 0.34
CLN6-203ENST00000563917 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.342e-7■■■■□ 23.4
CLN6-203ENST00000563917 SOGA1O94964 1423 aa17.14■□□□□ 0.33
CLN6-203ENST00000563917 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
CLN6-203ENST00000563917 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
CLN6-203ENST00000563917 RIMBP3CA6NJZ7 1639 aa17.08■□□□□ 0.32
CLN6-203ENST00000563917 RIMBP3BA6NNM3 1639 aa17.08■□□□□ 0.32
CLN6-203ENST00000563917 RIMBP3Q9UFD9 1639 aa17.08■□□□□ 0.32
CLN6-203ENST00000563917 TDRD9Q8NDG6 1382 aaKnown RBP17.08■□□□□ 0.32
CLN6-203ENST00000563917 CHD1O14646 1710 aa17.06■□□□□ 0.32
CLN6-203ENST00000563917 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
CLN6-203ENST00000563917 ARHGEF11O15085 1522 aa17.05■□□□□ 0.32
CLN6-203ENST00000563917 CUX1P39880 1505 aa17.05■□□□□ 0.32
CLN6-203ENST00000563917 CHMP7Q8WUX9 453 aaPredicted RBP17.02■□□□□ 0.32
CLN6-203ENST00000563917 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
CLN6-203ENST00000563917 CYB5RLQ6IPT4 315 aa16.99■□□□□ 0.31
CLN6-203ENST00000563917 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
CLN6-203ENST00000563917 MAGI1Q96QZ7 1491 aaPredicted RBP16.98■□□□□ 0.31
CLN6-203ENST00000563917 GAPVD1Q14C86 1478 aa16.93■□□□□ 0.3
CLN6-203ENST00000563917 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
CLN6-203ENST00000563917 SYNJ2O15056 1496 aa16.92■□□□□ 0.3
CLN6-203ENST00000563917 WRNQ14191 1432 aaPredicted RBP eCLIP16.9■□□□□ 0.31e-9■■■■■ 46
CLN6-203ENST00000563917 ABCA10Q8WWZ4 1543 aa16.89■□□□□ 0.29
CLN6-203ENST00000563917 PBRM1Q86U86 1689 aa16.88■□□□□ 0.29
CLN6-203ENST00000563917 ARAP1Q96P48 1450 aa16.86■□□□□ 0.29
CLN6-203ENST00000563917 TRHP20396 242 aaPredicted RBP16.84■□□□□ 0.29
CLN6-203ENST00000563917 CLASP1Q7Z460 1538 aa16.84■□□□□ 0.29
CLN6-203ENST00000563917 ABCA5Q8WWZ7 1642 aa16.83■□□□□ 0.28
CLN6-203ENST00000563917 TOP2BQ02880 1626 aa16.81■□□□□ 0.28
CLN6-203ENST00000563917 BIVM-ERCC5R4GMW8 1640 aa16.8■□□□□ 0.28
CLN6-203ENST00000563917 GRIN2AQ12879 1464 aa16.74■□□□□ 0.27
CLN6-203ENST00000563917 FHAD1B1AJZ9 1412 aa16.72■□□□□ 0.27
CLN6-203ENST00000563917 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
CLN6-203ENST00000563917 ERICH3Q5RHP9 1530 aa16.7■□□□□ 0.26
CLN6-203ENST00000563917 NUP160Q12769 1436 aa16.66■□□□□ 0.26
CLN6-203ENST00000563917 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
CLN6-203ENST00000563917 KIF27Q86VH2 1401 aa16.57■□□□□ 0.24
CLN6-203ENST00000563917 JPH4Q96JJ6 628 aa16.56■□□□□ 0.24
CLN6-203ENST00000563917 SHROOM2Q13796 1616 aa16.56■□□□□ 0.24
CLN6-203ENST00000563917 ERCC6L2Q5T890 1561 aa16.55■□□□□ 0.24
CLN6-203ENST00000563917 PRG4Q92954 1404 aaPredicted RBP16.54■□□□□ 0.24
CLN6-203ENST00000563917 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms