RNA–Protein interactions for RNA: ENST00000636314.1

CLN6-214, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3 BASIC

Gene CLN6, Length 442 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-214ENST00000636314 NISCHQ9Y2I1 1504 aa45.35■■■■■ 4.85
CLN6-214ENST00000636314 ABCC9O60706 1549 aa41.13■■■■■ 4.18
CLN6-214ENST00000636314 CCDC180Q9P1Z9 1646 aa40.89■■■■■ 4.14
CLN6-214ENST00000636314 RB1CC1Q8TDY2 1594 aa39.04■■■■□ 3.84
CLN6-214ENST00000636314 DNAJC5BQ9UF47 199 aa38.75■■■■□ 3.79
CLN6-214ENST00000636314 NACADO15069 1562 aa38.66■■■■□ 3.78
CLN6-214ENST00000636314 DCAF8L2P0C7V8 631 aa38.45■■■■□ 3.75
CLN6-214ENST00000636314 UNC13AQ9UPW8 1703 aa38.25■■■■□ 3.71
CLN6-214ENST00000636314 PABPN1Q86U42 306 aaKnown RBP eCLIP38.22■■■■□ 3.71
CLN6-214ENST00000636314 MYO15BQ96JP2 1530 aa37.97■■■■□ 3.67
CLN6-214ENST00000636314 BICRAQ9NZM4 1560 aa37.89■■■■□ 3.66
CLN6-214ENST00000636314 ZCCHC6Q5VYS8 1495 aaKnown RBP37.61■■■■□ 3.61
CLN6-214ENST00000636314 DCAF1Q9Y4B6 1507 aa37.41■■■■□ 3.58
CLN6-214ENST00000636314 SHROOM4Q9ULL8 1493 aa37.29■■■■□ 3.56
CLN6-214ENST00000636314 SCRIBQ14160 1630 aa37.26■■■■□ 3.56
CLN6-214ENST00000636314 CC2D2AQ9P2K1 1620 aa37.16■■■■□ 3.54
CLN6-214ENST00000636314 CECR2Q9BXF3 1484 aa37.06■■■■□ 3.52
CLN6-214ENST00000636314 EIF4G1Q04637 1599 aaKnown RBP36.99■■■■□ 3.51
CLN6-214ENST00000636314 DNAJC5Q9H3Z4 198 aa35.78■■■■□ 3.32
CLN6-214ENST00000636314 NCAPD3P42695 1498 aa35.64■■■■□ 3.3
CLN6-214ENST00000636314 ERCC6Q03468 1493 aa35.55■■■■□ 3.28
CLN6-214ENST00000636314 CUX2O14529 1486 aa35.54■■■■□ 3.28
CLN6-214ENST00000636314 ATAD2BQ9ULI0 1458 aa35.53■■■■□ 3.28
CLN6-214ENST00000636314 SMARCA4P51532 1647 aa35.48■■■■□ 3.27
CLN6-214ENST00000636314 SMARCA2P51531 1590 aa35.45■■■■□ 3.27
CLN6-214ENST00000636314 HMGXB3Q12766 1538 aa35.41■■■■□ 3.26
CLN6-214ENST00000636314 NESP48681 1621 aa35.24■■■■□ 3.23
CLN6-214ENST00000636314 BAZ1AQ9NRL2 1556 aaPredicted RBP35.24■■■■□ 3.23
CLN6-214ENST00000636314 BAZ1BQ9UIG0 1483 aaKnown RBP35.21■■■■□ 3.23
CLN6-214ENST00000636314 PEG3Q9GZU2 1588 aa35.08■■■■□ 3.21
CLN6-214ENST00000636314 THOC2Q8NI27 1593 aaKnown RBP34.97■■■■□ 3.19
CLN6-214ENST00000636314 LAMC3Q9Y6N6 1575 aa34.96■■■■□ 3.19
CLN6-214ENST00000636314 MROH2BQ7Z745 1585 aa34.96■■■■□ 3.19
CLN6-214ENST00000636314 KIF21AQ7Z4S6 1674 aa34.87■■■■□ 3.17
CLN6-214ENST00000636314 PDS5BQ9NTI5 1447 aa34.74■■■■□ 3.15
CLN6-214ENST00000636314 WIZO95785 1651 aa34.59■■■■□ 3.13
CLN6-214ENST00000636314 CADPSQ9ULU8 1353 aa34.57■■■■□ 3.12
CLN6-214ENST00000636314 MRC2Q9UBG0 1479 aa34.47■■■■□ 3.11
CLN6-214ENST00000636314 WDR62O43379 1518 aa34.4■■■■□ 3.1
CLN6-214ENST00000636314 CEP164Q9UPV0 1460 aa34.3■■■■□ 3.08
CLN6-214ENST00000636314 RSF1Q96T23 1441 aaPredicted RBP34.28■■■■□ 3.08
CLN6-214ENST00000636314 FANCD2Q9BXW9 1451 aa34.21■■■■□ 3.07
CLN6-214ENST00000636314 TRIM41Q8WV44 630 aa34.21■■■■□ 3.07
CLN6-214ENST00000636314 CFTRP13569 1480 aa34.11■■■■□ 3.05
CLN6-214ENST00000636314 TOP2AP11388 1531 aaKnown RBP34.09■■■■□ 3.05
CLN6-214ENST00000636314 URB2Q14146 1524 aaKnown RBP33.94■■■■□ 3.02
CLN6-214ENST00000636314 PRDM2Q13029 1718 aa33.93■■■■□ 3.02
CLN6-214ENST00000636314 OSCARQ8IYS5 282 aa33.84■■■■□ 3.01
CLN6-214ENST00000636314 CCDC88BA6NC98 1476 aa33.68■■■□□ 2.98
CLN6-214ENST00000636314 IFT140Q96RY7 1462 aa33.59■■■□□ 2.97
CLN6-214ENST00000636314 ZNF608Q9ULD9 1512 aaPredicted RBP33.58■■■□□ 2.97
CLN6-214ENST00000636314 TOPBP1Q92547 1522 aa33.54■■■□□ 2.96
CLN6-214ENST00000636314 RIMBP3CA6NJZ7 1639 aa33.53■■■□□ 2.96
CLN6-214ENST00000636314 RIMBP3BA6NNM3 1639 aa33.53■■■□□ 2.96
CLN6-214ENST00000636314 RIMBP3Q9UFD9 1639 aa33.53■■■□□ 2.96
CLN6-214ENST00000636314 EIF4G3O43432 1585 aaKnown RBP33.43■■■□□ 2.94
CLN6-214ENST00000636314 ABCC8Q09428 1581 aa33.43■■■□□ 2.94
CLN6-214ENST00000636314 DNMBPQ6XZF7 1577 aa33.42■■■□□ 2.94
CLN6-214ENST00000636314 ARHGEF11O15085 1522 aa33.34■■■□□ 2.93
CLN6-214ENST00000636314 CHD1O14646 1710 aa33.3■■■□□ 2.92
CLN6-214ENST00000636314 TARBP1Q13395 1621 aaKnown RBP33.28■■■□□ 2.92
CLN6-214ENST00000636314 AQRO60306 1485 aaKnown RBP eCLIP33.24■■■□□ 2.912e-7■■■■□ 23.4
CLN6-214ENST00000636314 POLA1P09884 1462 aaPredicted RBP33.17■■■□□ 2.9
CLN6-214ENST00000636314 SUPT5HO00267 1087 aaKnown RBP33.15■■■□□ 2.9
CLN6-214ENST00000636314 FBLN2P98095 1184 aa33.11■■■□□ 2.89
CLN6-214ENST00000636314 CYB5RLQ6IPT4 315 aa33.1■■■□□ 2.89
CLN6-214ENST00000636314 RAD54L2Q9Y4B4 1467 aa33.06■■■□□ 2.88
CLN6-214ENST00000636314 SOGA1O94964 1423 aa33.01■■■□□ 2.87
CLN6-214ENST00000636314 ARAP1Q96P48 1450 aa32.99■■■□□ 2.87
CLN6-214ENST00000636314 TDRD9Q8NDG6 1382 aaKnown RBP32.97■■■□□ 2.87
CLN6-214ENST00000636314 FGD5Q6ZNL6 1462 aa32.94■■■□□ 2.86
CLN6-214ENST00000636314 SNAPC4Q5SXM2 1469 aa32.92■■■□□ 2.86
CLN6-214ENST00000636314 WDR97A6NE52 1622 aa32.91■■■□□ 2.86
CLN6-214ENST00000636314 TRHP20396 242 aaPredicted RBP32.87■■■□□ 2.85
CLN6-214ENST00000636314 CUX1P39880 1505 aa32.87■■■□□ 2.85
CLN6-214ENST00000636314 CLASP1Q7Z460 1538 aa32.81■■■□□ 2.84
CLN6-214ENST00000636314 SYNJ1O43426 1573 aa32.79■■■□□ 2.84
CLN6-214ENST00000636314 CHMP7Q8WUX9 453 aaPredicted RBP32.79■■■□□ 2.84
CLN6-214ENST00000636314 MAGI1Q96QZ7 1491 aaPredicted RBP32.79■■■□□ 2.84
CLN6-214ENST00000636314 GRIN2BQ13224 1484 aa32.76■■■□□ 2.84
CLN6-214ENST00000636314 PBRM1Q86U86 1689 aa32.73■■■□□ 2.83
CLN6-214ENST00000636314 SYNJ2O15056 1496 aa32.68■■■□□ 2.82
CLN6-214ENST00000636314 GAPVD1Q14C86 1478 aa32.61■■■□□ 2.81
CLN6-214ENST00000636314 ABCA5Q8WWZ7 1642 aa32.55■■■□□ 2.8
CLN6-214ENST00000636314 ABCA10Q8WWZ4 1543 aa32.52■■■□□ 2.8
CLN6-214ENST00000636314 BIVM-ERCC5R4GMW8 1640 aa32.38■■■□□ 2.77
CLN6-214ENST00000636314 WRNQ14191 1432 aaPredicted RBP eCLIP32.37■■■□□ 2.771e-9■■■■■ 46
CLN6-214ENST00000636314 TOP2BQ02880 1626 aa32.36■■■□□ 2.77
CLN6-214ENST00000636314 GRIN2AQ12879 1464 aa32.35■■■□□ 2.77
CLN6-214ENST00000636314 ADAMTS12P58397 1594 aa32.33■■■□□ 2.77
CLN6-214ENST00000636314 ERCC6L2Q5T890 1561 aa32.3■■■□□ 2.76
CLN6-214ENST00000636314 CEP170Q5SW79 1584 aa32.27■■■□□ 2.76
CLN6-214ENST00000636314 NUP160Q12769 1436 aa32.21■■■□□ 2.75
CLN6-214ENST00000636314 FHAD1B1AJZ9 1412 aa32.17■■■□□ 2.74
CLN6-214ENST00000636314 SHROOM2Q13796 1616 aa32.15■■■□□ 2.74
CLN6-214ENST00000636314 AEBP2Q6ZN18 517 aaPredicted RBP32.13■■■□□ 2.73
CLN6-214ENST00000636314 ERICH3Q5RHP9 1530 aa32.12■■■□□ 2.73
CLN6-214ENST00000636314 KIF13AQ9H1H9 1805 aa31.96■■■□□ 2.71
CLN6-214ENST00000636314 PRG4Q92954 1404 aaPredicted RBP31.95■■■□□ 2.71
CLN6-214ENST00000636314 JPH4Q96JJ6 628 aa31.89■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms