RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 NISCHQ9Y2I1 1504 aa25.11■■□□□ 1.61
CLN6-217ENST00000636964 CCDC180Q9P1Z9 1646 aa21.61■■□□□ 1.05
CLN6-217ENST00000636964 ZCCHC6Q5VYS8 1495 aaKnown RBP21.1■□□□□ 0.97
CLN6-217ENST00000636964 DCAF8L2P0C7V8 631 aa21.08■□□□□ 0.97
CLN6-217ENST00000636964 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CLN6-217ENST00000636964 ABCC9O60706 1549 aa20.58■□□□□ 0.89
CLN6-217ENST00000636964 DCAF1Q9Y4B6 1507 aa20.58■□□□□ 0.89
CLN6-217ENST00000636964 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
CLN6-217ENST00000636964 MYO15BQ96JP2 1530 aa20.21■□□□□ 0.83
CLN6-217ENST00000636964 SCRIBQ14160 1630 aa20.18■□□□□ 0.82
CLN6-217ENST00000636964 NACADO15069 1562 aa20.14■□□□□ 0.81
CLN6-217ENST00000636964 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
CLN6-217ENST00000636964 RSF1Q96T23 1441 aaPredicted RBP19.64■□□□□ 0.73
CLN6-217ENST00000636964 CECR2Q9BXF3 1484 aa19.64■□□□□ 0.73
CLN6-217ENST00000636964 UNC13AQ9UPW8 1703 aa19.6■□□□□ 0.73
CLN6-217ENST00000636964 PABPN1Q86U42 306 aaKnown RBP eCLIP19.58■□□□□ 0.72
CLN6-217ENST00000636964 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
CLN6-217ENST00000636964 CHIC1Q5VXU3 224 aa19.45■□□□□ 0.7
CLN6-217ENST00000636964 BICRAQ9NZM4 1560 aa19.41■□□□□ 0.7
CLN6-217ENST00000636964 WIZO95785 1651 aa19.36■□□□□ 0.69
CLN6-217ENST00000636964 BAZ1AQ9NRL2 1556 aaPredicted RBP19.33■□□□□ 0.68
CLN6-217ENST00000636964 SMARCA4P51532 1647 aa19.24■□□□□ 0.67
CLN6-217ENST00000636964 TOP2AP11388 1531 aaKnown RBP19.03■□□□□ 0.64
CLN6-217ENST00000636964 PELP1Q8IZL8 1130 aaKnown RBP19.02■□□□□ 0.64
CLN6-217ENST00000636964 TRIM41Q8WV44 630 aa18.98■□□□□ 0.63
CLN6-217ENST00000636964 CCDC88BA6NC98 1476 aa18.96■□□□□ 0.63
CLN6-217ENST00000636964 SMARCA2P51531 1590 aa18.91■□□□□ 0.62
CLN6-217ENST00000636964 ATAD2BQ9ULI0 1458 aa18.91■□□□□ 0.62
CLN6-217ENST00000636964 PEG3Q9GZU2 1588 aa18.88■□□□□ 0.61
CLN6-217ENST00000636964 LOC105371045A0A1W2PR82 267 aa18.87■□□□□ 0.61
CLN6-217ENST00000636964 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.6
CLN6-217ENST00000636964 FAM9AQ8IZU1 332 aaPredicted RBP18.82■□□□□ 0.6
CLN6-217ENST00000636964 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
CLN6-217ENST00000636964 MYT1Q01538 1121 aa18.81■□□□□ 0.6
CLN6-217ENST00000636964 HRCP23327 699 aa18.73■□□□□ 0.59
CLN6-217ENST00000636964 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
CLN6-217ENST00000636964 EHMT2Q96KQ7 1210 aa18.69■□□□□ 0.58
CLN6-217ENST00000636964 NCAPD3P42695 1498 aa18.64■□□□□ 0.58
CLN6-217ENST00000636964 HMGXB3Q12766 1538 aa18.57■□□□□ 0.56
CLN6-217ENST00000636964 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
CLN6-217ENST00000636964 WRNQ14191 1432 aaPredicted RBP eCLIP18.48■□□□□ 0.55
CLN6-217ENST00000636964 PPARGC1BQ86YN6 1023 aaKnown RBP18.45■□□□□ 0.54
CLN6-217ENST00000636964 SOGA1O94964 1423 aa18.42■□□□□ 0.54
CLN6-217ENST00000636964 SYNJ1O43426 1573 aa18.39■□□□□ 0.53
CLN6-217ENST00000636964 RUSC2Q8N2Y8 1516 aa18.37■□□□□ 0.53
CLN6-217ENST00000636964 CFTRP13569 1480 aa18.32■□□□□ 0.52
CLN6-217ENST00000636964 CSRNP3Q8WYN3 585 aa18.29■□□□□ 0.52
CLN6-217ENST00000636964 PCGF6Q9BYE7 350 aa18.26■□□□□ 0.51
CLN6-217ENST00000636964 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
CLN6-217ENST00000636964 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
CLN6-217ENST00000636964 TOP2BQ02880 1626 aa18.21■□□□□ 0.51
CLN6-217ENST00000636964 EEA1Q15075 1411 aa18.2■□□□□ 0.5
CLN6-217ENST00000636964 UBTFP17480 764 aaKnown RBP18.19■□□□□ 0.5
CLN6-217ENST00000636964 CUX1P39880 1505 aa18.18■□□□□ 0.5
CLN6-217ENST00000636964 NESP48681 1621 aa18.15■□□□□ 0.5
CLN6-217ENST00000636964 BIVM-ERCC5R4GMW8 1640 aa18.15■□□□□ 0.5
CLN6-217ENST00000636964 TTBK1Q5TCY1 1321 aaPredicted RBP18.12■□□□□ 0.49
CLN6-217ENST00000636964 PRDM2Q13029 1718 aa18.1■□□□□ 0.49
CLN6-217ENST00000636964 FANCD2Q9BXW9 1451 aa18.07■□□□□ 0.48
CLN6-217ENST00000636964 GOLGA3Q08378 1498 aa18.06■□□□□ 0.48
CLN6-217ENST00000636964 TNIKQ9UKE5 1360 aa18.06■□□□□ 0.48
CLN6-217ENST00000636964 CEP162Q5TB80 1403 aa18.04■□□□□ 0.48
CLN6-217ENST00000636964 CEP164Q9UPV0 1460 aa18.02■□□□□ 0.48
CLN6-217ENST00000636964 TRIM26Q12899 539 aaPredicted RBP18.02■□□□□ 0.48
CLN6-217ENST00000636964 RANGAP1P46060 587 aaPredicted RBP18.01■□□□□ 0.47
CLN6-217ENST00000636964 PRKCSHP14314 528 aaPredicted RBP18■□□□□ 0.47
CLN6-217ENST00000636964 RAPGEF2Q9Y4G8 1499 aa18■□□□□ 0.47
CLN6-217ENST00000636964 KIF21BO75037 1637 aa17.97■□□□□ 0.47
CLN6-217ENST00000636964 FGD5Q6ZNL6 1462 aa17.97■□□□□ 0.47
CLN6-217ENST00000636964 KIF27Q86VH2 1401 aa17.96■□□□□ 0.47
CLN6-217ENST00000636964 LAMC3Q9Y6N6 1575 aa17.94■□□□□ 0.46
CLN6-217ENST00000636964 CUX2O14529 1486 aa17.93■□□□□ 0.46
CLN6-217ENST00000636964 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
CLN6-217ENST00000636964 PRXQ9BXM0 1461 aa17.87■□□□□ 0.45
CLN6-217ENST00000636964 RAD54L2Q9Y4B4 1467 aa17.87■□□□□ 0.45
CLN6-217ENST00000636964 SLC24A1O60721 1099 aa17.87■□□□□ 0.45
CLN6-217ENST00000636964 PDS5BQ9NTI5 1447 aa17.87■□□□□ 0.45
CLN6-217ENST00000636964 SCAF1Q9H7N4 1312 aaKnown RBP17.86■□□□□ 0.45
CLN6-217ENST00000636964 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
CLN6-217ENST00000636964 CLIP1P30622 1438 aa17.85■□□□□ 0.45
CLN6-217ENST00000636964 URB2Q14146 1524 aaKnown RBP17.83■□□□□ 0.45
CLN6-217ENST00000636964 POLA1P09884 1462 aaPredicted RBP17.83■□□□□ 0.45
CLN6-217ENST00000636964 IGF1RP08069 1367 aa17.83■□□□□ 0.45
CLN6-217ENST00000636964 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
CLN6-217ENST00000636964 ERICH3Q5RHP9 1530 aa17.79■□□□□ 0.44
CLN6-217ENST00000636964 CARMIL1Q5VZK9 1371 aa17.76■□□□□ 0.43
CLN6-217ENST00000636964 ABCA10Q8WWZ4 1543 aa17.73■□□□□ 0.43
CLN6-217ENST00000636964 TDRD9Q8NDG6 1382 aaKnown RBP17.72■□□□□ 0.43
CLN6-217ENST00000636964 VPS8Q8N3P4 1428 aa17.67■□□□□ 0.42
CLN6-217ENST00000636964 APLP2Q06481 763 aa17.63■□□□□ 0.41
CLN6-217ENST00000636964 ARAP1Q96P48 1450 aa17.61■□□□□ 0.41
CLN6-217ENST00000636964 MRC2Q9UBG0 1479 aa17.61■□□□□ 0.41
CLN6-217ENST00000636964 ERICH6Q7L0X2 663 aa17.6■□□□□ 0.41
CLN6-217ENST00000636964 GAPVD1Q14C86 1478 aa17.59■□□□□ 0.41
CLN6-217ENST00000636964 WDR97A6NE52 1622 aa17.59■□□□□ 0.41
CLN6-217ENST00000636964 ARHGAP35Q9NRY4 1499 aa17.57■□□□□ 0.4
CLN6-217ENST00000636964 ERCC6Q03468 1493 aa17.57■□□□□ 0.4
CLN6-217ENST00000636964 P3H3Q8IVL6 736 aa17.57■□□□□ 0.4
CLN6-217ENST00000636964 TARBP1Q13395 1621 aaKnown RBP17.55■□□□□ 0.4
CLN6-217ENST00000636964 AQRO60306 1485 aaKnown RBP eCLIP17.54■□□□□ 0.43e-7■■■■■ 36.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms