RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-225ENST00000638144 NISCHQ9Y2I1 1504 aa30.5■■■□□ 2.47
CLN6-225ENST00000638144 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
CLN6-225ENST00000638144 ABCC9O60706 1549 aa26.64■■□□□ 1.85
CLN6-225ENST00000638144 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
CLN6-225ENST00000638144 RB1CC1Q8TDY2 1594 aa25.52■■□□□ 1.68
CLN6-225ENST00000638144 NACADO15069 1562 aa25.46■■□□□ 1.67
CLN6-225ENST00000638144 ZCCHC6Q5VYS8 1495 aaKnown RBP25.41■■□□□ 1.66
CLN6-225ENST00000638144 MYO15BQ96JP2 1530 aa25.23■■□□□ 1.63
CLN6-225ENST00000638144 DCAF1Q9Y4B6 1507 aa25.15■■□□□ 1.62
CLN6-225ENST00000638144 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
CLN6-225ENST00000638144 PABPN1Q86U42 306 aaKnown RBP eCLIP24.88■■□□□ 1.57
CLN6-225ENST00000638144 SCRIBQ14160 1630 aa24.86■■□□□ 1.57
CLN6-225ENST00000638144 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
CLN6-225ENST00000638144 DNAJC5BQ9UF47 199 aa24.44■■□□□ 1.5
CLN6-225ENST00000638144 SHROOM4Q9ULL8 1493 aa24.39■■□□□ 1.5
CLN6-225ENST00000638144 EIF4G1Q04637 1599 aaKnown RBP24.14■■□□□ 1.45
CLN6-225ENST00000638144 CC2D2AQ9P2K1 1620 aa24.07■■□□□ 1.44
CLN6-225ENST00000638144 CECR2Q9BXF3 1484 aa23.88■■□□□ 1.41
CLN6-225ENST00000638144 SMARCA4P51532 1647 aa23.71■■□□□ 1.39
CLN6-225ENST00000638144 BAZ1AQ9NRL2 1556 aaPredicted RBP23.62■■□□□ 1.37
CLN6-225ENST00000638144 MROH2BQ7Z745 1585 aa23.57■■□□□ 1.36
CLN6-225ENST00000638144 ATAD2BQ9ULI0 1458 aa23.55■■□□□ 1.36
CLN6-225ENST00000638144 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
CLN6-225ENST00000638144 NCAPD3P42695 1498 aa23.48■■□□□ 1.35
CLN6-225ENST00000638144 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
CLN6-225ENST00000638144 HMGXB3Q12766 1538 aa23.4■■□□□ 1.34
CLN6-225ENST00000638144 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
CLN6-225ENST00000638144 WIZO95785 1651 aa23.35■■□□□ 1.33
CLN6-225ENST00000638144 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
CLN6-225ENST00000638144 NESP48681 1621 aa23.07■■□□□ 1.28
CLN6-225ENST00000638144 TOP2AP11388 1531 aaKnown RBP23.03■■□□□ 1.28
CLN6-225ENST00000638144 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
CLN6-225ENST00000638144 LAMC3Q9Y6N6 1575 aa22.89■■□□□ 1.26
CLN6-225ENST00000638144 CADPSQ9ULU8 1353 aa22.81■■□□□ 1.24
CLN6-225ENST00000638144 KIF21AQ7Z4S6 1674 aa22.81■■□□□ 1.24
CLN6-225ENST00000638144 CCDC88BA6NC98 1476 aa22.76■■□□□ 1.23
CLN6-225ENST00000638144 PDS5BQ9NTI5 1447 aa22.72■■□□□ 1.23
CLN6-225ENST00000638144 SUPT5HO00267 1087 aaKnown RBP22.71■■□□□ 1.23
CLN6-225ENST00000638144 THOC2Q8NI27 1593 aaKnown RBP22.69■■□□□ 1.22
CLN6-225ENST00000638144 CFTRP13569 1480 aa22.68■■□□□ 1.22
CLN6-225ENST00000638144 CUX2O14529 1486 aa22.61■■□□□ 1.21
CLN6-225ENST00000638144 FANCD2Q9BXW9 1451 aa22.6■■□□□ 1.21
CLN6-225ENST00000638144 PRDM2Q13029 1718 aa22.59■■□□□ 1.21
CLN6-225ENST00000638144 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
CLN6-225ENST00000638144 MRC2Q9UBG0 1479 aa22.54■■□□□ 1.2
CLN6-225ENST00000638144 WDR62O43379 1518 aa22.47■■□□□ 1.19
CLN6-225ENST00000638144 URB2Q14146 1524 aaKnown RBP22.41■■□□□ 1.18
CLN6-225ENST00000638144 TOPBP1Q92547 1522 aa22.25■■□□□ 1.15
CLN6-225ENST00000638144 DNMBPQ6XZF7 1577 aa22.22■■□□□ 1.15
CLN6-225ENST00000638144 ABCC8Q09428 1581 aa22.13■■□□□ 1.13
CLN6-225ENST00000638144 CUX1P39880 1505 aa22.11■■□□□ 1.13
CLN6-225ENST00000638144 IFT140Q96RY7 1462 aa22.07■■□□□ 1.12
CLN6-225ENST00000638144 POLA1P09884 1462 aaPredicted RBP22.06■■□□□ 1.12
CLN6-225ENST00000638144 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
CLN6-225ENST00000638144 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
CLN6-225ENST00000638144 TARBP1Q13395 1621 aaKnown RBP22.02■■□□□ 1.11
CLN6-225ENST00000638144 RAD54L2Q9Y4B4 1467 aa22.01■■□□□ 1.11
CLN6-225ENST00000638144 EIF4G3O43432 1585 aaKnown RBP21.98■■□□□ 1.11
CLN6-225ENST00000638144 SOGA1O94964 1423 aa21.94■■□□□ 1.1
CLN6-225ENST00000638144 SYNJ1O43426 1573 aa21.94■■□□□ 1.1
CLN6-225ENST00000638144 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
CLN6-225ENST00000638144 AQRO60306 1485 aaKnown RBP eCLIP21.91■■□□□ 1.12e-7■■■■□ 23.4
CLN6-225ENST00000638144 WRNQ14191 1432 aaPredicted RBP eCLIP21.91■■□□□ 1.11e-9■■■■■ 46
CLN6-225ENST00000638144 BIVM-ERCC5R4GMW8 1640 aa21.89■■□□□ 1.09
CLN6-225ENST00000638144 TOP2BQ02880 1626 aa21.88■■□□□ 1.09
CLN6-225ENST00000638144 WDR97A6NE52 1622 aa21.87■■□□□ 1.09
CLN6-225ENST00000638144 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
CLN6-225ENST00000638144 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
CLN6-225ENST00000638144 PBRM1Q86U86 1689 aa21.73■■□□□ 1.07
CLN6-225ENST00000638144 CHD1O14646 1710 aa21.73■■□□□ 1.07
CLN6-225ENST00000638144 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
CLN6-225ENST00000638144 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
CLN6-225ENST00000638144 GAPVD1Q14C86 1478 aa21.7■■□□□ 1.06
CLN6-225ENST00000638144 GRIN2BQ13224 1484 aa21.68■■□□□ 1.06
CLN6-225ENST00000638144 FBLN2P98095 1184 aa21.65■■□□□ 1.06
CLN6-225ENST00000638144 OSCARQ8IYS5 282 aa21.65■■□□□ 1.06
CLN6-225ENST00000638144 MAGI1Q96QZ7 1491 aaPredicted RBP21.61■■□□□ 1.05
CLN6-225ENST00000638144 SYNJ2O15056 1496 aa21.54■■□□□ 1.04
CLN6-225ENST00000638144 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
CLN6-225ENST00000638144 CHMP7Q8WUX9 453 aaPredicted RBP21.52■■□□□ 1.04
CLN6-225ENST00000638144 ERICH3Q5RHP9 1530 aa21.48■■□□□ 1.03
CLN6-225ENST00000638144 RIMBP3CA6NJZ7 1639 aa21.43■■□□□ 1.02
CLN6-225ENST00000638144 RIMBP3BA6NNM3 1639 aa21.43■■□□□ 1.02
CLN6-225ENST00000638144 RIMBP3Q9UFD9 1639 aa21.43■■□□□ 1.02
CLN6-225ENST00000638144 GRIN2AQ12879 1464 aa21.42■■□□□ 1.02
CLN6-225ENST00000638144 CLASP1Q7Z460 1538 aa21.42■■□□□ 1.02
CLN6-225ENST00000638144 KIF27Q86VH2 1401 aa21.42■■□□□ 1.02
CLN6-225ENST00000638144 FHAD1B1AJZ9 1412 aa21.41■■□□□ 1.02
CLN6-225ENST00000638144 ARHGEF11O15085 1522 aa21.39■■□□□ 1.02
CLN6-225ENST00000638144 TRIM41Q8WV44 630 aa21.37■■□□□ 1.01
CLN6-225ENST00000638144 CEP170Q5SW79 1584 aa21.36■■□□□ 1.01
CLN6-225ENST00000638144 RUSC2Q8N2Y8 1516 aa21.34■■□□□ 1.01
CLN6-225ENST00000638144 IGF1RP08069 1367 aa21.34■■□□□ 1.01
CLN6-225ENST00000638144 CUL7Q14999 1698 aa21.32■■□□□ 1
CLN6-225ENST00000638144 NUP160Q12769 1436 aa21.3■■□□□ 1
CLN6-225ENST00000638144 ARAP1Q96P48 1450 aa21.24■□□□□ 0.99
CLN6-225ENST00000638144 CARMIL1Q5VZK9 1371 aa21.22■□□□□ 0.99
CLN6-225ENST00000638144 ERCC6L2Q5T890 1561 aa21.21■□□□□ 0.99
CLN6-225ENST00000638144 CYB5RLQ6IPT4 315 aa21.18■□□□□ 0.98
CLN6-225ENST00000638144 SHROOM2Q13796 1616 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms