RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 NISCHQ9Y2I1 1504 aa46.42■■■■■ 5.02
CLN6-224ENST00000638076 CCDC180Q9P1Z9 1646 aa39.87■■■■□ 3.97
CLN6-224ENST00000638076 ZCCHC6Q5VYS8 1495 aaKnown RBP39.15■■■■□ 3.86
CLN6-224ENST00000638076 SHROOM4Q9ULL8 1493 aa38.85■■■■□ 3.81
CLN6-224ENST00000638076 DCAF8L2P0C7V8 631 aa38.41■■■■□ 3.74
CLN6-224ENST00000638076 DCAF1Q9Y4B6 1507 aa38.21■■■■□ 3.71
CLN6-224ENST00000638076 SUPT5HO00267 1087 aaKnown RBP37.82■■■■□ 3.64
CLN6-224ENST00000638076 MYO15BQ96JP2 1530 aa37.39■■■■□ 3.58
CLN6-224ENST00000638076 ABCC9O60706 1549 aa37.24■■■■□ 3.55
CLN6-224ENST00000638076 SCRIBQ14160 1630 aa37.08■■■■□ 3.53
CLN6-224ENST00000638076 NACADO15069 1562 aa36.99■■■■□ 3.51
CLN6-224ENST00000638076 CHIC1Q5VXU3 224 aa36.56■■■■□ 3.44
CLN6-224ENST00000638076 RB1CC1Q8TDY2 1594 aa36.49■■■■□ 3.43
CLN6-224ENST00000638076 RSF1Q96T23 1441 aaPredicted RBP36.44■■■■□ 3.42
CLN6-224ENST00000638076 CECR2Q9BXF3 1484 aa36.14■■■■□ 3.38
CLN6-224ENST00000638076 MROH2BQ7Z745 1585 aa35.99■■■■□ 3.35
CLN6-224ENST00000638076 UNC13AQ9UPW8 1703 aa35.86■■■■□ 3.33
CLN6-224ENST00000638076 WIZO95785 1651 aa35.75■■■■□ 3.31
CLN6-224ENST00000638076 BAZ1AQ9NRL2 1556 aaPredicted RBP35.73■■■■□ 3.31
CLN6-224ENST00000638076 SMARCA4P51532 1647 aa35.48■■■■□ 3.27
CLN6-224ENST00000638076 BICRAQ9NZM4 1560 aa35.46■■■■□ 3.27
CLN6-224ENST00000638076 PABPN1Q86U42 306 aaKnown RBP eCLIP35.42■■■■□ 3.26
CLN6-224ENST00000638076 TRIM41Q8WV44 630 aa35.38■■■■□ 3.25
CLN6-224ENST00000638076 LOC105371045A0A1W2PR82 267 aa35.34■■■■□ 3.25
CLN6-224ENST00000638076 TOP2AP11388 1531 aaKnown RBP35.28■■■■□ 3.24
CLN6-224ENST00000638076 EIF4G1Q04637 1599 aaKnown RBP35.06■■■■□ 3.2
CLN6-224ENST00000638076 CCDC88BA6NC98 1476 aa35.05■■■■□ 3.2
CLN6-224ENST00000638076 SMARCA2P51531 1590 aa35.03■■■■□ 3.2
CLN6-224ENST00000638076 FAM9AQ8IZU1 332 aaPredicted RBP34.92■■■■□ 3.18
CLN6-224ENST00000638076 PEG3Q9GZU2 1588 aa34.92■■■■□ 3.18
CLN6-224ENST00000638076 ATAD2BQ9ULI0 1458 aa34.71■■■■□ 3.15
CLN6-224ENST00000638076 ABCC8Q09428 1581 aa34.68■■■■□ 3.14
CLN6-224ENST00000638076 PCGF6Q9BYE7 350 aa34.67■■■■□ 3.14
CLN6-224ENST00000638076 BAZ1BQ9UIG0 1483 aaKnown RBP34.58■■■■□ 3.13
CLN6-224ENST00000638076 EHMT2Q96KQ7 1210 aa34.54■■■■□ 3.12
CLN6-224ENST00000638076 HRCP23327 699 aa34.3■■■■□ 3.08
CLN6-224ENST00000638076 TRIM26Q12899 539 aaPredicted RBP34.29■■■■□ 3.08
CLN6-224ENST00000638076 WRNQ14191 1432 aaPredicted RBP eCLIP34.26■■■■□ 3.071e-9■■■■■ 46
CLN6-224ENST00000638076 SOGA1O94964 1423 aa34.23■■■■□ 3.07
CLN6-224ENST00000638076 NCAPD3P42695 1498 aa34.2■■■■□ 3.06
CLN6-224ENST00000638076 HMGXB3Q12766 1538 aa34.18■■■■□ 3.06
CLN6-224ENST00000638076 EEA1Q15075 1411 aa34.12■■■■□ 3.05
CLN6-224ENST00000638076 SYNJ1O43426 1573 aa34.09■■■■□ 3.05
CLN6-224ENST00000638076 RUSC2Q8N2Y8 1516 aa34.07■■■■□ 3.04
CLN6-224ENST00000638076 CSRNP3Q8WYN3 585 aa34.02■■■■□ 3.04
CLN6-224ENST00000638076 TNIKQ9UKE5 1360 aa33.86■■■■□ 3.01
CLN6-224ENST00000638076 CEP162Q5TB80 1403 aa33.81■■■■□ 3
CLN6-224ENST00000638076 TOP2BQ02880 1626 aa33.8■■■■□ 3
CLN6-224ENST00000638076 GOLGA3Q08378 1498 aa33.78■■■■□ 3
CLN6-224ENST00000638076 UBTFP17480 764 aaKnown RBP33.76■■■■□ 3
CLN6-224ENST00000638076 CFTRP13569 1480 aa33.73■■■□□ 2.99
CLN6-224ENST00000638076 PPARGC1BQ86YN6 1023 aaKnown RBP33.7■■■□□ 2.99
CLN6-224ENST00000638076 BIVM-ERCC5R4GMW8 1640 aa33.7■■■□□ 2.99
CLN6-224ENST00000638076 CEP164Q9UPV0 1460 aa33.68■■■□□ 2.98
CLN6-224ENST00000638076 KIF21BO75037 1637 aa33.65■■■□□ 2.98
CLN6-224ENST00000638076 CC2D2AQ9P2K1 1620 aa33.62■■■□□ 2.97
CLN6-224ENST00000638076 CUX1P39880 1505 aa33.57■■■□□ 2.96
CLN6-224ENST00000638076 PRDM2Q13029 1718 aa33.47■■■□□ 2.95
CLN6-224ENST00000638076 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
CLN6-224ENST00000638076 RAPGEF2Q9Y4G8 1499 aa33.45■■■□□ 2.95
CLN6-224ENST00000638076 CLIP1P30622 1438 aa33.34■■■□□ 2.93
CLN6-224ENST00000638076 ZEB1P37275 1124 aaPredicted RBP33.3■■■□□ 2.92
CLN6-224ENST00000638076 KIF27Q86VH2 1401 aa33.28■■■□□ 2.92
CLN6-224ENST00000638076 PRXQ9BXM0 1461 aa33.28■■■□□ 2.92
CLN6-224ENST00000638076 TTBK1Q5TCY1 1321 aaPredicted RBP33.28■■■□□ 2.92
CLN6-224ENST00000638076 ERICH3Q5RHP9 1530 aa33.24■■■□□ 2.91
CLN6-224ENST00000638076 VPS8Q8N3P4 1428 aa33.13■■■□□ 2.89
CLN6-224ENST00000638076 RANGAP1P46060 587 aaPredicted RBP33.12■■■□□ 2.89
CLN6-224ENST00000638076 FANCD2Q9BXW9 1451 aa33.11■■■□□ 2.89
CLN6-224ENST00000638076 FGD5Q6ZNL6 1462 aa33.06■■■□□ 2.88
CLN6-224ENST00000638076 CUX2O14529 1486 aa33.05■■■□□ 2.88
CLN6-224ENST00000638076 NESP48681 1621 aa32.99■■■□□ 2.87
CLN6-224ENST00000638076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.95■■■□□ 2.86
CLN6-224ENST00000638076 IGF1RP08069 1367 aa32.95■■■□□ 2.86
CLN6-224ENST00000638076 APLP2Q06481 763 aa32.91■■■□□ 2.86
CLN6-224ENST00000638076 DNMBPQ6XZF7 1577 aa32.9■■■□□ 2.86
CLN6-224ENST00000638076 ARAP1Q96P48 1450 aa32.88■■■□□ 2.85
CLN6-224ENST00000638076 CCER1Q8TC90 406 aaPredicted RBP32.86■■■□□ 2.85
CLN6-224ENST00000638076 LAMC3Q9Y6N6 1575 aa32.85■■■□□ 2.85
CLN6-224ENST00000638076 TOPBP1Q92547 1522 aa32.84■■■□□ 2.85
CLN6-224ENST00000638076 CARMIL1Q5VZK9 1371 aa32.8■■■□□ 2.84
CLN6-224ENST00000638076 POLA1P09884 1462 aaPredicted RBP32.77■■■□□ 2.84
CLN6-224ENST00000638076 DNAJC5BQ9UF47 199 aa32.77■■■□□ 2.84
CLN6-224ENST00000638076 RAD54L2Q9Y4B4 1467 aa32.76■■■□□ 2.83
CLN6-224ENST00000638076 ABCA10Q8WWZ4 1543 aa32.72■■■□□ 2.83
CLN6-224ENST00000638076 ARHGAP35Q9NRY4 1499 aa32.71■■■□□ 2.83
CLN6-224ENST00000638076 URB2Q14146 1524 aaKnown RBP32.66■■■□□ 2.82
CLN6-224ENST00000638076 PDS5BQ9NTI5 1447 aa32.64■■■□□ 2.82
CLN6-224ENST00000638076 HNRNPUL2Q1KMD3 747 aaKnown RBP32.57■■■□□ 2.81
CLN6-224ENST00000638076 KANK4Q5T7N3 995 aaPredicted RBP32.54■■■□□ 2.8
CLN6-224ENST00000638076 KIF21AQ7Z4S6 1674 aa32.48■■■□□ 2.79
CLN6-224ENST00000638076 WDR97A6NE52 1622 aa32.48■■■□□ 2.79
CLN6-224ENST00000638076 CUL7Q14999 1698 aa32.46■■■□□ 2.79
CLN6-224ENST00000638076 TDRD9Q8NDG6 1382 aaKnown RBP32.39■■■□□ 2.78
CLN6-224ENST00000638076 ABCA5Q8WWZ7 1642 aa32.36■■■□□ 2.77
CLN6-224ENST00000638076 GAPVD1Q14C86 1478 aa32.32■■■□□ 2.77
CLN6-224ENST00000638076 RRBP1Q9P2E9 1410 aaKnown RBP32.28■■■□□ 2.76
CLN6-224ENST00000638076 P3H3Q8IVL6 736 aa32.28■■■□□ 2.76
CLN6-224ENST00000638076 FHAD1B1AJZ9 1412 aa32.28■■■□□ 2.76
CLN6-224ENST00000638076 MAP3K1Q13233 1512 aa32.27■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms