RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 NISCHQ9Y2I1 1504 aa46.64■■■■■ 5.06
CLN6-221ENST00000637494 CCDC180Q9P1Z9 1646 aa41.72■■■■■ 4.27
CLN6-221ENST00000637494 ABCC9O60706 1549 aa41.3■■■■■ 4.2
CLN6-221ENST00000637494 RB1CC1Q8TDY2 1594 aa39.55■■■■□ 3.92
CLN6-221ENST00000637494 NACADO15069 1562 aa39.36■■■■□ 3.89
CLN6-221ENST00000637494 DCAF8L2P0C7V8 631 aa39.31■■■■□ 3.88
CLN6-221ENST00000637494 MYO15BQ96JP2 1530 aa38.94■■■■□ 3.82
CLN6-221ENST00000637494 ZCCHC6Q5VYS8 1495 aaKnown RBP38.73■■■■□ 3.79
CLN6-221ENST00000637494 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
CLN6-221ENST00000637494 UNC13AQ9UPW8 1703 aa38.54■■■■□ 3.76
CLN6-221ENST00000637494 PABPN1Q86U42 306 aaKnown RBP eCLIP38.51■■■■□ 3.76
CLN6-221ENST00000637494 DNAJC5BQ9UF47 199 aa38.27■■■■□ 3.72
CLN6-221ENST00000637494 BICRAQ9NZM4 1560 aa38.25■■■■□ 3.71
CLN6-221ENST00000637494 SCRIBQ14160 1630 aa38.02■■■■□ 3.68
CLN6-221ENST00000637494 SHROOM4Q9ULL8 1493 aa37.92■■■■□ 3.66
CLN6-221ENST00000637494 EIF4G1Q04637 1599 aaKnown RBP37.35■■■■□ 3.57
CLN6-221ENST00000637494 CC2D2AQ9P2K1 1620 aa37.32■■■■□ 3.57
CLN6-221ENST00000637494 CECR2Q9BXF3 1484 aa37.19■■■■□ 3.54
CLN6-221ENST00000637494 SMARCA4P51532 1647 aa36.3■■■■□ 3.4
CLN6-221ENST00000637494 NCAPD3P42695 1498 aa36.29■■■■□ 3.4
CLN6-221ENST00000637494 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
CLN6-221ENST00000637494 ATAD2BQ9ULI0 1458 aa36.23■■■■□ 3.39
CLN6-221ENST00000637494 SMARCA2P51531 1590 aa36.23■■■■□ 3.39
CLN6-221ENST00000637494 HMGXB3Q12766 1538 aa36.08■■■■□ 3.37
CLN6-221ENST00000637494 BAZ1BQ9UIG0 1483 aaKnown RBP35.97■■■■□ 3.35
CLN6-221ENST00000637494 PEG3Q9GZU2 1588 aa35.93■■■■□ 3.34
CLN6-221ENST00000637494 MROH2BQ7Z745 1585 aa35.91■■■■□ 3.34
CLN6-221ENST00000637494 ERCC6Q03468 1493 aa35.73■■■■□ 3.31
CLN6-221ENST00000637494 NESP48681 1621 aa35.55■■■■□ 3.28
CLN6-221ENST00000637494 WIZO95785 1651 aa35.51■■■■□ 3.28
CLN6-221ENST00000637494 CUX2O14529 1486 aa35.48■■■■□ 3.27
CLN6-221ENST00000637494 LAMC3Q9Y6N6 1575 aa35.46■■■■□ 3.27
CLN6-221ENST00000637494 RSF1Q96T23 1441 aaPredicted RBP35.33■■■■□ 3.25
CLN6-221ENST00000637494 PDS5BQ9NTI5 1447 aa35.27■■■■□ 3.24
CLN6-221ENST00000637494 CADPSQ9ULU8 1353 aa35.24■■■■□ 3.23
CLN6-221ENST00000637494 TOP2AP11388 1531 aaKnown RBP35.14■■■■□ 3.22
CLN6-221ENST00000637494 KIF21AQ7Z4S6 1674 aa35.14■■■■□ 3.22
CLN6-221ENST00000637494 THOC2Q8NI27 1593 aaKnown RBP35.13■■■■□ 3.21
CLN6-221ENST00000637494 DNAJC5Q9H3Z4 198 aa34.96■■■■□ 3.19
CLN6-221ENST00000637494 MRC2Q9UBG0 1479 aa34.9■■■■□ 3.18
CLN6-221ENST00000637494 CFTRP13569 1480 aa34.9■■■■□ 3.18
CLN6-221ENST00000637494 CEP164Q9UPV0 1460 aa34.87■■■■□ 3.17
CLN6-221ENST00000637494 FANCD2Q9BXW9 1451 aa34.84■■■■□ 3.17
CLN6-221ENST00000637494 WDR62O43379 1518 aa34.76■■■■□ 3.16
CLN6-221ENST00000637494 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
CLN6-221ENST00000637494 PRDM2Q13029 1718 aa34.6■■■■□ 3.13
CLN6-221ENST00000637494 URB2Q14146 1524 aaKnown RBP34.47■■■■□ 3.11
CLN6-221ENST00000637494 ABCC8Q09428 1581 aa34.25■■■■□ 3.07
CLN6-221ENST00000637494 TOPBP1Q92547 1522 aa34.2■■■■□ 3.07
CLN6-221ENST00000637494 SUPT5HO00267 1087 aaKnown RBP34.16■■■■□ 3.06
CLN6-221ENST00000637494 IFT140Q96RY7 1462 aa34.15■■■■□ 3.06
CLN6-221ENST00000637494 DNMBPQ6XZF7 1577 aa34.14■■■■□ 3.06
CLN6-221ENST00000637494 OSCARQ8IYS5 282 aa33.97■■■■□ 3.03
CLN6-221ENST00000637494 ZNF608Q9ULD9 1512 aaPredicted RBP33.97■■■■□ 3.03
CLN6-221ENST00000637494 POLA1P09884 1462 aaPredicted RBP33.87■■■■□ 3.01
CLN6-221ENST00000637494 EIF4G3O43432 1585 aaKnown RBP33.85■■■■□ 3.01
CLN6-221ENST00000637494 TARBP1Q13395 1621 aaKnown RBP33.83■■■■□ 3.01
CLN6-221ENST00000637494 SOGA1O94964 1423 aa33.77■■■■□ 3
CLN6-221ENST00000637494 AQRO60306 1485 aaKnown RBP eCLIP33.74■■■□□ 2.992e-7■■■■□ 23.4
CLN6-221ENST00000637494 FGD5Q6ZNL6 1462 aa33.73■■■□□ 2.99
CLN6-221ENST00000637494 CUX1P39880 1505 aa33.73■■■□□ 2.99
CLN6-221ENST00000637494 RAD54L2Q9Y4B4 1467 aa33.72■■■□□ 2.99
CLN6-221ENST00000637494 TRIM41Q8WV44 630 aa33.66■■■□□ 2.98
CLN6-221ENST00000637494 TDRD9Q8NDG6 1382 aaKnown RBP33.62■■■□□ 2.97
CLN6-221ENST00000637494 WDR97A6NE52 1622 aa33.62■■■□□ 2.97
CLN6-221ENST00000637494 FBLN2P98095 1184 aa33.55■■■□□ 2.96
CLN6-221ENST00000637494 CHD1O14646 1710 aa33.51■■■□□ 2.96
CLN6-221ENST00000637494 GRIN2BQ13224 1484 aa33.44■■■□□ 2.94
CLN6-221ENST00000637494 SNAPC4Q5SXM2 1469 aa33.44■■■□□ 2.94
CLN6-221ENST00000637494 RIMBP3CA6NJZ7 1639 aa33.4■■■□□ 2.94
CLN6-221ENST00000637494 RIMBP3BA6NNM3 1639 aa33.4■■■□□ 2.94
CLN6-221ENST00000637494 RIMBP3Q9UFD9 1639 aa33.4■■■□□ 2.94
CLN6-221ENST00000637494 MAGI1Q96QZ7 1491 aaPredicted RBP33.4■■■□□ 2.94
CLN6-221ENST00000637494 WRNQ14191 1432 aaPredicted RBP eCLIP33.38■■■□□ 2.931e-9■■■■■ 46
CLN6-221ENST00000637494 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
CLN6-221ENST00000637494 CHMP7Q8WUX9 453 aaPredicted RBP33.37■■■□□ 2.93
CLN6-221ENST00000637494 GAPVD1Q14C86 1478 aa33.37■■■□□ 2.93
CLN6-221ENST00000637494 ARHGEF11O15085 1522 aa33.34■■■□□ 2.93
CLN6-221ENST00000637494 TOP2BQ02880 1626 aa33.33■■■□□ 2.93
CLN6-221ENST00000637494 BIVM-ERCC5R4GMW8 1640 aa33.33■■■□□ 2.93
CLN6-221ENST00000637494 PBRM1Q86U86 1689 aa33.3■■■□□ 2.92
CLN6-221ENST00000637494 SYNJ2O15056 1496 aa33.27■■■□□ 2.92
CLN6-221ENST00000637494 SYNJ1O43426 1573 aa33.26■■■□□ 2.92
CLN6-221ENST00000637494 ABCA5Q8WWZ7 1642 aa33.26■■■□□ 2.91
CLN6-221ENST00000637494 CYB5RLQ6IPT4 315 aa33.12■■■□□ 2.89
CLN6-221ENST00000637494 CLASP1Q7Z460 1538 aa33.12■■■□□ 2.89
CLN6-221ENST00000637494 ARAP1Q96P48 1450 aa33.01■■■□□ 2.88
CLN6-221ENST00000637494 ADAMTS12P58397 1594 aa33■■■□□ 2.87
CLN6-221ENST00000637494 ERICH3Q5RHP9 1530 aa32.99■■■□□ 2.87
CLN6-221ENST00000637494 GRIN2AQ12879 1464 aa32.98■■■□□ 2.87
CLN6-221ENST00000637494 FHAD1B1AJZ9 1412 aa32.97■■■□□ 2.87
CLN6-221ENST00000637494 NUP160Q12769 1436 aa32.83■■■□□ 2.85
CLN6-221ENST00000637494 CEP170Q5SW79 1584 aa32.8■■■□□ 2.84
CLN6-221ENST00000637494 KIF27Q86VH2 1401 aa32.76■■■□□ 2.83
CLN6-221ENST00000637494 TRHP20396 242 aaPredicted RBP32.7■■■□□ 2.83
CLN6-221ENST00000637494 SHROOM2Q13796 1616 aa32.62■■■□□ 2.81
CLN6-221ENST00000637494 IGF1RP08069 1367 aa32.61■■■□□ 2.81
CLN6-221ENST00000637494 CUL7Q14999 1698 aa32.61■■■□□ 2.81
CLN6-221ENST00000637494 ERCC6L2Q5T890 1561 aa32.58■■■□□ 2.81
CLN6-221ENST00000637494 JPH4Q96JJ6 628 aa32.55■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms