RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-215ENST00000636674 NISCHQ9Y2I1 1504 aa30.03■■■□□ 2.4
CLN6-215ENST00000636674 CCDC180Q9P1Z9 1646 aa26.13■■□□□ 1.77
CLN6-215ENST00000636674 ZCCHC6Q5VYS8 1495 aaKnown RBP25.49■■□□□ 1.67
CLN6-215ENST00000636674 ABCC9O60706 1549 aa25.47■■□□□ 1.67
CLN6-215ENST00000636674 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
CLN6-215ENST00000636674 SUPT5HO00267 1087 aaKnown RBP24.91■■□□□ 1.58
CLN6-215ENST00000636674 DCAF1Q9Y4B6 1507 aa24.82■■□□□ 1.56
CLN6-215ENST00000636674 RB1CC1Q8TDY2 1594 aa24.56■■□□□ 1.52
CLN6-215ENST00000636674 NACADO15069 1562 aa24.53■■□□□ 1.52
CLN6-215ENST00000636674 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
CLN6-215ENST00000636674 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
CLN6-215ENST00000636674 DCAF8L2P0C7V8 631 aa24.35■■□□□ 1.49
CLN6-215ENST00000636674 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
CLN6-215ENST00000636674 HRCP23327 699 aa24.03■■□□□ 1.44
CLN6-215ENST00000636674 BICRAQ9NZM4 1560 aa23.81■■□□□ 1.4
CLN6-215ENST00000636674 SCRIBQ14160 1630 aa23.79■■□□□ 1.4
CLN6-215ENST00000636674 RSF1Q96T23 1441 aaPredicted RBP23.76■■□□□ 1.39
CLN6-215ENST00000636674 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
CLN6-215ENST00000636674 PCGF6Q9BYE7 350 aa23.74■■□□□ 1.39
CLN6-215ENST00000636674 LOC105371045A0A1W2PR82 267 aa23.59■■□□□ 1.37
CLN6-215ENST00000636674 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
CLN6-215ENST00000636674 DNAJC5BQ9UF47 199 aa23.35■■□□□ 1.33
CLN6-215ENST00000636674 TRIM41Q8WV44 630 aa23.3■■□□□ 1.32
CLN6-215ENST00000636674 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
CLN6-215ENST00000636674 MROH2BQ7Z745 1585 aa23.28■■□□□ 1.32
CLN6-215ENST00000636674 CECR2Q9BXF3 1484 aa23.28■■□□□ 1.32
CLN6-215ENST00000636674 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
CLN6-215ENST00000636674 WIZO95785 1651 aa23.18■■□□□ 1.3
CLN6-215ENST00000636674 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
CLN6-215ENST00000636674 CC2D2AQ9P2K1 1620 aa23.09■■□□□ 1.29
CLN6-215ENST00000636674 ZEB1P37275 1124 aaPredicted RBP23.06■■□□□ 1.28
CLN6-215ENST00000636674 FAM9AQ8IZU1 332 aaPredicted RBP22.95■■□□□ 1.26
CLN6-215ENST00000636674 TOP2AP11388 1531 aaKnown RBP22.92■■□□□ 1.26
CLN6-215ENST00000636674 SMARCA4P51532 1647 aa22.87■■□□□ 1.25
CLN6-215ENST00000636674 SMARCA2P51531 1590 aa22.77■■□□□ 1.24
CLN6-215ENST00000636674 CCDC88BA6NC98 1476 aa22.71■■□□□ 1.23
CLN6-215ENST00000636674 ABCC8Q09428 1581 aa22.65■■□□□ 1.22
CLN6-215ENST00000636674 WRNQ14191 1432 aaPredicted RBP eCLIP22.64■■□□□ 1.22
CLN6-215ENST00000636674 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
CLN6-215ENST00000636674 ATAD2BQ9ULI0 1458 aa22.61■■□□□ 1.21
CLN6-215ENST00000636674 EHMT2Q96KQ7 1210 aa22.6■■□□□ 1.21
CLN6-215ENST00000636674 EEA1Q15075 1411 aa22.57■■□□□ 1.2
CLN6-215ENST00000636674 PEG3Q9GZU2 1588 aa22.56■■□□□ 1.2
CLN6-215ENST00000636674 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
CLN6-215ENST00000636674 TNIKQ9UKE5 1360 aa22.48■■□□□ 1.19
CLN6-215ENST00000636674 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
CLN6-215ENST00000636674 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CLN6-215ENST00000636674 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
CLN6-215ENST00000636674 GOLGA3Q08378 1498 aa22.35■■□□□ 1.17
CLN6-215ENST00000636674 CSRNP3Q8WYN3 585 aa22.32■■□□□ 1.16
CLN6-215ENST00000636674 RUSC2Q8N2Y8 1516 aa22.3■■□□□ 1.16
CLN6-215ENST00000636674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.29■■□□□ 1.16
CLN6-215ENST00000636674 CCER1Q8TC90 406 aaPredicted RBP22.29■■□□□ 1.16
CLN6-215ENST00000636674 KIF21BO75037 1637 aa22.29■■□□□ 1.16
CLN6-215ENST00000636674 SYNJ1O43426 1573 aa22.23■■□□□ 1.15
CLN6-215ENST00000636674 CEP164Q9UPV0 1460 aa22.21■■□□□ 1.15
CLN6-215ENST00000636674 SCAF1Q9H7N4 1312 aaKnown RBP22.15■■□□□ 1.14
CLN6-215ENST00000636674 UBTFP17480 764 aaKnown RBP22.13■■□□□ 1.13
CLN6-215ENST00000636674 PELP1Q8IZL8 1130 aaKnown RBP22.08■■□□□ 1.13
CLN6-215ENST00000636674 LAMC3Q9Y6N6 1575 aa22.04■■□□□ 1.12
CLN6-215ENST00000636674 NESP48681 1621 aa22.04■■□□□ 1.12
CLN6-215ENST00000636674 TOP2BQ02880 1626 aa22.02■■□□□ 1.12
CLN6-215ENST00000636674 CLIP1P30622 1438 aa22.02■■□□□ 1.12
CLN6-215ENST00000636674 VPS8Q8N3P4 1428 aa22.01■■□□□ 1.11
CLN6-215ENST00000636674 BIVM-ERCC5R4GMW8 1640 aa21.99■■□□□ 1.11
CLN6-215ENST00000636674 DIEXFQ68CQ4 756 aaKnown RBP21.98■■□□□ 1.11
CLN6-215ENST00000636674 TTBK1Q5TCY1 1321 aaPredicted RBP21.97■■□□□ 1.11
CLN6-215ENST00000636674 ACIN1Q9UKV3 1341 aaKnown RBP21.96■■□□□ 1.11
CLN6-215ENST00000636674 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
CLN6-215ENST00000636674 RAPGEF2Q9Y4G8 1499 aa21.93■■□□□ 1.1
CLN6-215ENST00000636674 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
CLN6-215ENST00000636674 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
CLN6-215ENST00000636674 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
CLN6-215ENST00000636674 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
CLN6-215ENST00000636674 NEUROD1Q13562 356 aa21.84■■□□□ 1.09
CLN6-215ENST00000636674 ZNF316A6NFI3 1004 aaPredicted RBP21.83■■□□□ 1.09
CLN6-215ENST00000636674 CENPBP07199 599 aaPredicted RBP21.83■■□□□ 1.09
CLN6-215ENST00000636674 CFTRP13569 1480 aa21.81■■□□□ 1.08
CLN6-215ENST00000636674 PRXQ9BXM0 1461 aa21.8■■□□□ 1.08
CLN6-215ENST00000636674 CUX2O14529 1486 aa21.78■■□□□ 1.08
CLN6-215ENST00000636674 THOC2Q8NI27 1593 aaKnown RBP21.78■■□□□ 1.08
CLN6-215ENST00000636674 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
CLN6-215ENST00000636674 APLP2Q06481 763 aa21.72■■□□□ 1.07
CLN6-215ENST00000636674 ARAP1Q96P48 1450 aa21.7■■□□□ 1.07
CLN6-215ENST00000636674 CUX1P39880 1505 aa21.69■■□□□ 1.06
CLN6-215ENST00000636674 HNRNPUL2Q1KMD3 747 aaKnown RBP21.68■■□□□ 1.06
CLN6-215ENST00000636674 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
CLN6-215ENST00000636674 CLSPNQ9HAW4 1339 aa21.65■■□□□ 1.06
CLN6-215ENST00000636674 MRC2Q9UBG0 1479 aa21.65■■□□□ 1.06
CLN6-215ENST00000636674 KIF27Q86VH2 1401 aa21.62■■□□□ 1.05
CLN6-215ENST00000636674 GTF3C3Q9Y5Q9 886 aa21.62■■□□□ 1.05
CLN6-215ENST00000636674 WDR62O43379 1518 aa21.6■■□□□ 1.05
CLN6-215ENST00000636674 RRBP1Q9P2E9 1410 aaKnown RBP21.56■■□□□ 1.04
CLN6-215ENST00000636674 DHX57Q6P158 1386 aaKnown RBP21.51■■□□□ 1.03
CLN6-215ENST00000636674 ARHGAP35Q9NRY4 1499 aa21.48■■□□□ 1.03
CLN6-215ENST00000636674 URB2Q14146 1524 aaKnown RBP21.47■■□□□ 1.03
CLN6-215ENST00000636674 MIER1Q8N108 512 aa21.45■■□□□ 1.02
CLN6-215ENST00000636674 RANGAP1P46060 587 aaPredicted RBP21.44■■□□□ 1.02
CLN6-215ENST00000636674 MAP3K1Q13233 1512 aa21.43■■□□□ 1.02
CLN6-215ENST00000636674 KANK4Q5T7N3 995 aaPredicted RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms