Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
UPK1AO00322 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
UPK1AO00322 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
UPK1AO00322 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UPK1AO00322 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
UPK1AO00322 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
UPK1AO00322 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.05■■□□□ 1.44
UPK1AO00322 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.05■■□□□ 1.44
UPK1AO00322 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
UPK1AO00322 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
UPK1AO00322 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.04■■□□□ 1.44
UPK1AO00322 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.04■■□□□ 1.44
UPK1AO00322 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPK1AO00322 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPK1AO00322 RPS2P35-201ENST00000443417 897 ntBASIC24.03■■□□□ 1.44
UPK1AO00322 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.03■■□□□ 1.44
UPK1AO00322 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPK1AO00322 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.02■■□□□ 1.44
UPK1AO00322 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPK1AO00322 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
UPK1AO00322 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
UPK1AO00322 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
UPK1AO00322 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.01■■□□□ 1.43
UPK1AO00322 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
UPK1AO00322 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
UPK1AO00322 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.01■■□□□ 1.43
UPK1AO00322 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
UPK1AO00322 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24■■□□□ 1.43
UPK1AO00322 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24■■□□□ 1.43
UPK1AO00322 AC135983.2-203ENST00000454486 1613 ntBASIC24■■□□□ 1.43
UPK1AO00322 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24■■□□□ 1.43
UPK1AO00322 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
UPK1AO00322 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPK1AO00322 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24■■□□□ 1.43
UPK1AO00322 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
UPK1AO00322 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
UPK1AO00322 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.99■■□□□ 1.43
UPK1AO00322 LINC00273-201ENST00000539813 1452 ntBASIC23.99■■□□□ 1.43
UPK1AO00322 AC100797.4-201ENST00000631653 1827 ntBASIC23.98■■□□□ 1.43
UPK1AO00322 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.98■■□□□ 1.43
UPK1AO00322 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPK1AO00322 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPK1AO00322 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPK1AO00322 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
UPK1AO00322 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPK1AO00322 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
UPK1AO00322 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.96■■□□□ 1.43
UPK1AO00322 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
UPK1AO00322 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPK1AO00322 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPK1AO00322 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
UPK1AO00322 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPK1AO00322 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.96■■□□□ 1.43
UPK1AO00322 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
UPK1AO00322 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPK1AO00322 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UPK1AO00322 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
UPK1AO00322 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.95■■□□□ 1.42
UPK1AO00322 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPK1AO00322 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UPK1AO00322 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.95■■□□□ 1.42
UPK1AO00322 WHAMMP2-203ENST00000563942 1603 ntBASIC23.95■■□□□ 1.42
UPK1AO00322 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPK1AO00322 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPK1AO00322 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.94■■□□□ 1.42
UPK1AO00322 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPK1AO00322 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
UPK1AO00322 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPK1AO00322 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UPK1AO00322 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPK1AO00322 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UPK1AO00322 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.92■■□□□ 1.42
UPK1AO00322 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.92■■□□□ 1.42
UPK1AO00322 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.92■■□□□ 1.42
UPK1AO00322 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.92■■□□□ 1.42
UPK1AO00322 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UPK1AO00322 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.91■■□□□ 1.42
UPK1AO00322 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
UPK1AO00322 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.91■■□□□ 1.42
UPK1AO00322 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
UPK1AO00322 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.91■■□□□ 1.42
UPK1AO00322 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
UPK1AO00322 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.91■■□□□ 1.42
UPK1AO00322 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.9■■□□□ 1.42
UPK1AO00322 AC021231.2-201ENST00000594613 730 ntBASIC23.9■■□□□ 1.42
UPK1AO00322 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
UPK1AO00322 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
UPK1AO00322 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
UPK1AO00322 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
UPK1AO00322 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.89■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms