RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 NISCHQ9Y2I1 1504 aa49.73■■■■■ 5.55
SPTSSA-201ENST00000298130 SHROOM4Q9ULL8 1493 aa43.31■■■■■ 4.52
SPTSSA-201ENST00000298130 SUPT5HO00267 1087 aaKnown RBP42.56■■■■■ 4.4
SPTSSA-201ENST00000298130 ZCCHC6Q5VYS8 1495 aaKnown RBP42.04■■■■■ 4.32
SPTSSA-201ENST00000298130 DCAF8L2P0C7V8 631 aa42.04■■■■■ 4.32
SPTSSA-201ENST00000298130 CCDC180Q9P1Z9 1646 aa41.79■■■■■ 4.28
SPTSSA-201ENST00000298130 CHIC1Q5VXU3 224 aa41.17■■■■■ 4.18
SPTSSA-201ENST00000298130 MYO15BQ96JP2 1530 aa41.11■■■■■ 4.17
SPTSSA-201ENST00000298130 DCAF1Q9Y4B6 1507 aa40.43■■■■■ 4.06
SPTSSA-201ENST00000298130 PCGF6Q9BYE7 350 aa40.37■■■■■ 4.05
SPTSSA-201ENST00000298130 LOC105371045A0A1W2PR82 267 aa40.28■■■■■ 4.04
SPTSSA-201ENST00000298130 HRCP23327 699 aa40.21■■■■■ 4.03
SPTSSA-201ENST00000298130 SCRIBQ14160 1630 aa39.81■■■■□ 3.96
SPTSSA-201ENST00000298130 PPARGC1BQ86YN6 1023 aaKnown RBP39.8■■■■□ 3.96
SPTSSA-201ENST00000298130 ABCC9O60706 1549 aa39.67■■■■□ 3.94
SPTSSA-201ENST00000298130 RSF1Q96T23 1441 aaPredicted RBP39.59■■■■□ 3.93
SPTSSA-201ENST00000298130 FAM9AQ8IZU1 332 aaPredicted RBP39.44■■■■□ 3.9
SPTSSA-201ENST00000298130 EHMT2Q96KQ7 1210 aa39.4■■■■□ 3.9
SPTSSA-201ENST00000298130 TRIM41Q8WV44 630 aa39.38■■■■□ 3.89
SPTSSA-201ENST00000298130 RB1CC1Q8TDY2 1594 aa39.25■■■■□ 3.87
SPTSSA-201ENST00000298130 TRIM26Q12899 539 aaPredicted RBP39.21■■■■□ 3.87
SPTSSA-201ENST00000298130 CECR2Q9BXF3 1484 aa39.09■■■■□ 3.85
SPTSSA-201ENST00000298130 MROH2BQ7Z745 1585 aa38.86■■■■□ 3.81
SPTSSA-201ENST00000298130 NACADO15069 1562 aa38.75■■■■□ 3.79
SPTSSA-201ENST00000298130 WIZO95785 1651 aa38.65■■■■□ 3.78
SPTSSA-201ENST00000298130 ZEB1P37275 1124 aaPredicted RBP38.22■■■■□ 3.71
SPTSSA-201ENST00000298130 BAZ1AQ9NRL2 1556 aaPredicted RBP38.15■■■■□ 3.7
SPTSSA-201ENST00000298130 TTBK1Q5TCY1 1321 aaPredicted RBP38.12■■■■□ 3.69
SPTSSA-201ENST00000298130 ABCC8Q09428 1581 aa38.02■■■■□ 3.68
SPTSSA-201ENST00000298130 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.97■■■■□ 3.67
SPTSSA-201ENST00000298130 EIF4G1Q04637 1599 aaKnown RBP37.93■■■■□ 3.66
SPTSSA-201ENST00000298130 CCDC88BA6NC98 1476 aa37.91■■■■□ 3.66
SPTSSA-201ENST00000298130 PABPN1Q86U42 306 aaKnown RBP eCLIP37.89■■■■□ 3.66
SPTSSA-201ENST00000298130 TOP2AP11388 1531 aaKnown RBP37.81■■■■□ 3.64
SPTSSA-201ENST00000298130 SMARCA4P51532 1647 aa37.79■■■■□ 3.64
SPTSSA-201ENST00000298130 SOGA1O94964 1423 aa37.74■■■■□ 3.63
SPTSSA-201ENST00000298130 CCER1Q8TC90 406 aaPredicted RBP37.74■■■■□ 3.63
SPTSSA-201ENST00000298130 SMARCA2P51531 1590 aa37.7■■■■□ 3.63
SPTSSA-201ENST00000298130 UNC13AQ9UPW8 1703 aa37.63■■■■□ 3.62
SPTSSA-201ENST00000298130 RUSC2Q8N2Y8 1516 aa37.59■■■■□ 3.61
SPTSSA-201ENST00000298130 UBTFP17480 764 aaKnown RBP37.58■■■■□ 3.61
SPTSSA-201ENST00000298130 CEP162Q5TB80 1403 aa37.53■■■■□ 3.6
SPTSSA-201ENST00000298130 CSRNP3Q8WYN3 585 aa37.48■■■■□ 3.59
SPTSSA-201ENST00000298130 SCAF1Q9H7N4 1312 aaKnown RBP37.35■■■■□ 3.57
SPTSSA-201ENST00000298130 TNIKQ9UKE5 1360 aa37.32■■■■□ 3.56
SPTSSA-201ENST00000298130 WRNQ14191 1432 aaPredicted RBP eCLIP37.27■■■■□ 3.56
SPTSSA-201ENST00000298130 BICRAQ9NZM4 1560 aa37.24■■■■□ 3.55
SPTSSA-201ENST00000298130 RANGAP1P46060 587 aaPredicted RBP37.18■■■■□ 3.54
SPTSSA-201ENST00000298130 EEA1Q15075 1411 aa37.08■■■■□ 3.53
SPTSSA-201ENST00000298130 GOLGA3Q08378 1498 aa37.06■■■■□ 3.52
SPTSSA-201ENST00000298130 DIEXFQ68CQ4 756 aaKnown RBP37.04■■■■□ 3.52
SPTSSA-201ENST00000298130 HNRNPUL2Q1KMD3 747 aaKnown RBP37■■■■□ 3.51
SPTSSA-201ENST00000298130 SYNJ1O43426 1573 aa36.98■■■■□ 3.51
SPTSSA-201ENST00000298130 NEUROD1Q13562 356 aa36.9■■■■□ 3.5
SPTSSA-201ENST00000298130 ATAD2BQ9ULI0 1458 aa36.88■■■■□ 3.49
SPTSSA-201ENST00000298130 PEG3Q9GZU2 1588 aa36.82■■■■□ 3.49
SPTSSA-201ENST00000298130 BAZ1BQ9UIG0 1483 aaKnown RBP36.82■■■■□ 3.48
SPTSSA-201ENST00000298130 ACIN1Q9UKV3 1341 aaKnown RBP36.79■■■■□ 3.48
SPTSSA-201ENST00000298130 CLIP1P30622 1438 aa36.79■■■■□ 3.48
SPTSSA-201ENST00000298130 CEP164Q9UPV0 1460 aa36.79■■■■□ 3.48
SPTSSA-201ENST00000298130 RAPGEF2Q9Y4G8 1499 aa36.73■■■■□ 3.47
SPTSSA-201ENST00000298130 APLP2Q06481 763 aa36.65■■■■□ 3.46
SPTSSA-201ENST00000298130 ZNF316A6NFI3 1004 aaPredicted RBP36.61■■■■□ 3.45
SPTSSA-201ENST00000298130 KIF21BO75037 1637 aa36.59■■■■□ 3.45
SPTSSA-201ENST00000298130 VPS8Q8N3P4 1428 aa36.55■■■■□ 3.44
SPTSSA-201ENST00000298130 GTF3C3Q9Y5Q9 886 aa36.55■■■■□ 3.44
SPTSSA-201ENST00000298130 YTHDC1Q96MU7 727 aaKnown RBP36.51■■■■□ 3.44
SPTSSA-201ENST00000298130 CENPBP07199 599 aaPredicted RBP36.46■■■■□ 3.43
SPTSSA-201ENST00000298130 TOP2BQ02880 1626 aa36.32■■■■□ 3.4
SPTSSA-201ENST00000298130 MIER1Q8N108 512 aa36.31■■■■□ 3.4
SPTSSA-201ENST00000298130 KANK4Q5T7N3 995 aaPredicted RBP36.27■■■■□ 3.4
SPTSSA-201ENST00000298130 PELP1Q8IZL8 1130 aaKnown RBP36.25■■■■□ 3.39
SPTSSA-201ENST00000298130 PRXQ9BXM0 1461 aa36.12■■■■□ 3.37
SPTSSA-201ENST00000298130 ARAP1Q96P48 1450 aa36.11■■■■□ 3.37
SPTSSA-201ENST00000298130 CUX1P39880 1505 aa36.1■■■■□ 3.37
SPTSSA-201ENST00000298130 BIVM-ERCC5R4GMW8 1640 aa36.08■■■■□ 3.37
SPTSSA-201ENST00000298130 ITGAEP38570 1179 aa36.05■■■■□ 3.36
SPTSSA-201ENST00000298130 NCAPD3P42695 1498 aa35.99■■■■□ 3.35
SPTSSA-201ENST00000298130 KIF27Q86VH2 1401 aa35.97■■■■□ 3.35
SPTSSA-201ENST00000298130 ERICH3Q5RHP9 1530 aa35.95■■■■□ 3.35
SPTSSA-201ENST00000298130 DHX57Q6P158 1386 aaKnown RBP35.93■■■■□ 3.34
SPTSSA-201ENST00000298130 HMGXB3Q12766 1538 aa35.86■■■■□ 3.33
SPTSSA-201ENST00000298130 CFTRP13569 1480 aa35.83■■■■□ 3.33
SPTSSA-201ENST00000298130 ARHGAP35Q9NRY4 1499 aa35.78■■■■□ 3.32
SPTSSA-201ENST00000298130 CUX2O14529 1486 aa35.72■■■■□ 3.31
SPTSSA-201ENST00000298130 P3H3Q8IVL6 736 aa35.69■■■■□ 3.3
SPTSSA-201ENST00000298130 CCNB3Q8WWL7 1395 aa35.67■■■■□ 3.3
SPTSSA-201ENST00000298130 RRBP1Q9P2E9 1410 aaKnown RBP35.66■■■■□ 3.3
SPTSSA-201ENST00000298130 IGF1RP08069 1367 aa35.66■■■■□ 3.3
SPTSSA-201ENST00000298130 ATP1B4Q9UN42 357 aaPredicted RBP35.63■■■■□ 3.29
SPTSSA-201ENST00000298130 CLSPNQ9HAW4 1339 aa35.6■■■■□ 3.29
SPTSSA-201ENST00000298130 CARMIL1Q5VZK9 1371 aa35.52■■■■□ 3.28
SPTSSA-201ENST00000298130 CADPSQ9ULU8 1353 aa35.49■■■■□ 3.27
SPTSSA-201ENST00000298130 FGD5Q6ZNL6 1462 aa35.47■■■■□ 3.27
SPTSSA-201ENST00000298130 FAM50AQ14320 339 aaKnown RBP35.47■■■■□ 3.27
SPTSSA-201ENST00000298130 RAB3GAP2Q9H2M9 1393 aa35.46■■■■□ 3.27
SPTSSA-201ENST00000298130 PHLDB1Q86UU1 1377 aa35.36■■■■□ 3.25
SPTSSA-201ENST00000298130 SIN3AQ96ST3 1273 aa35.34■■■■□ 3.25
SPTSSA-201ENST00000298130 KCNH8Q96L42 1107 aa35.3■■■■□ 3.24
SPTSSA-201ENST00000298130 TIAM1Q13009 1591 aa35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms