Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.57■□□□□ 0.4
SSX4O60224 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.56■□□□□ 0.4
SSX4O60224 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SSX4O60224 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SSX4O60224 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SSX4O60224 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.56■□□□□ 0.4
SSX4O60224 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.56■□□□□ 0.4
SSX4O60224 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.56■□□□□ 0.4
SSX4O60224 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
SSX4O60224 AC098590.1-201ENST00000468126 897 ntBASIC17.56■□□□□ 0.4
SSX4O60224 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.56■□□□□ 0.4
SSX4O60224 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SSX4O60224 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
SSX4O60224 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.56■□□□□ 0.4
SSX4O60224 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
SSX4O60224 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SSX4O60224 TREX1-205ENST00000625293 1783 ntBASIC17.56■□□□□ 0.4
SSX4O60224 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.55■□□□□ 0.4
SSX4O60224 AC092720.2-201ENST00000602388 1665 ntBASIC17.55■□□□□ 0.4
SSX4O60224 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 AC091799.1-201ENST00000422823 811 ntBASIC17.55■□□□□ 0.4
SSX4O60224 AC128676.1-201ENST00000454392 318 ntBASIC17.55■□□□□ 0.4
SSX4O60224 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 AC142381.4-202ENST00000563973 229 ntBASIC17.55■□□□□ 0.4
SSX4O60224 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 FAM21FP-204ENST00000608637 956 ntBASIC17.55■□□□□ 0.4
SSX4O60224 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 KRT17P1-201ENST00000399211 1546 ntBASIC17.55■□□□□ 0.4
SSX4O60224 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SSX4O60224 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SSX4O60224 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SSX4O60224 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.55■□□□□ 0.4
SSX4O60224 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SSX4O60224 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.54■□□□□ 0.4
SSX4O60224 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SSX4O60224 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.54■□□□□ 0.4
SSX4O60224 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.54■□□□□ 0.4
SSX4O60224 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.54■□□□□ 0.4
SSX4O60224 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SSX4O60224 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SSX4O60224 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
SSX4O60224 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SSX4O60224 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.54■□□□□ 0.4
SSX4O60224 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SSX4O60224 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SSX4O60224 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SSX4O60224 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.53■□□□□ 0.4
SSX4O60224 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
SSX4O60224 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms