RNA–Protein interactions for RNA: ENST00000447601.6

FAM3A-215, Transcript of family with sequence similarity 3 member A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FAM3A, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-215ENST00000447601 NISCHQ9Y2I1 1504 aa42.77■■■■■ 4.44
FAM3A-215ENST00000447601 CCDC180Q9P1Z9 1646 aa36.94■■■■□ 3.5
FAM3A-215ENST00000447601 ZCCHC6Q5VYS8 1495 aaKnown RBP36.05■■■■□ 3.36
FAM3A-215ENST00000447601 SHROOM4Q9ULL8 1493 aa35.37■■■■□ 3.25
FAM3A-215ENST00000447601 DCAF1Q9Y4B6 1507 aa35.35■■■■□ 3.25
FAM3A-215ENST00000447601 DCAF8L2P0C7V8 631 aa35.22■■■■□ 3.23
FAM3A-215ENST00000447601 MYO15BQ96JP2 1530 aa34.72■■■■□ 3.15
FAM3A-215ENST00000447601 ABCC9O60706 1549 aa34.53■■■■□ 3.12
FAM3A-215ENST00000447601 SUPT5HO00267 1087 aaKnown RBP34.34■■■■□ 3.09
FAM3A-215ENST00000447601 NACADO15069 1562 aa34.33■■■■□ 3.09
FAM3A-215ENST00000447601 SCRIBQ14160 1630 aa34.13■■■■□ 3.05
FAM3A-215ENST00000447601 RB1CC1Q8TDY2 1594 aa33.9■■■■□ 3.02
FAM3A-215ENST00000447601 RSF1Q96T23 1441 aaPredicted RBP33.44■■■□□ 2.94
FAM3A-215ENST00000447601 CECR2Q9BXF3 1484 aa33.2■■■□□ 2.91
FAM3A-215ENST00000447601 CHIC1Q5VXU3 224 aa33.14■■■□□ 2.9
FAM3A-215ENST00000447601 UNC13AQ9UPW8 1703 aa33.11■■■□□ 2.89
FAM3A-215ENST00000447601 MROH2BQ7Z745 1585 aa33.07■■■□□ 2.89
FAM3A-215ENST00000447601 BAZ1AQ9NRL2 1556 aaPredicted RBP32.98■■■□□ 2.87
FAM3A-215ENST00000447601 BICRAQ9NZM4 1560 aa32.85■■■□□ 2.85
FAM3A-215ENST00000447601 WIZO95785 1651 aa32.79■■■□□ 2.84
FAM3A-215ENST00000447601 SMARCA4P51532 1647 aa32.72■■■□□ 2.83
FAM3A-215ENST00000447601 PABPN1Q86U42 306 aaKnown RBP eCLIP32.71■■■□□ 2.83
FAM3A-215ENST00000447601 TOP2AP11388 1531 aaKnown RBP32.5■■■□□ 2.79
FAM3A-215ENST00000447601 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
FAM3A-215ENST00000447601 TRIM41Q8WV44 630 aa32.24■■■□□ 2.75
FAM3A-215ENST00000447601 SMARCA2P51531 1590 aa32.2■■■□□ 2.75
FAM3A-215ENST00000447601 CCDC88BA6NC98 1476 aa32.2■■■□□ 2.75
FAM3A-215ENST00000447601 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
FAM3A-215ENST00000447601 ATAD2BQ9ULI0 1458 aa32.09■■■□□ 2.73
FAM3A-215ENST00000447601 BAZ1BQ9UIG0 1483 aaKnown RBP31.96■■■□□ 2.71
FAM3A-215ENST00000447601 LOC105371045A0A1W2PR82 267 aa31.91■■■□□ 2.7
FAM3A-215ENST00000447601 NCAPD3P42695 1498 aa31.71■■■□□ 2.67
FAM3A-215ENST00000447601 HMGXB3Q12766 1538 aa31.7■■■□□ 2.67
FAM3A-215ENST00000447601 ABCC8Q09428 1581 aa31.69■■■□□ 2.66
FAM3A-215ENST00000447601 FAM9AQ8IZU1 332 aaPredicted RBP31.67■■■□□ 2.66
FAM3A-215ENST00000447601 WRNQ14191 1432 aaPredicted RBP eCLIP31.47■■■□□ 2.63
FAM3A-215ENST00000447601 EEA1Q15075 1411 aa31.33■■■□□ 2.61
FAM3A-215ENST00000447601 SOGA1O94964 1423 aa31.26■■■□□ 2.59
FAM3A-215ENST00000447601 SYNJ1O43426 1573 aa31.26■■■□□ 2.59
FAM3A-215ENST00000447601 EHMT2Q96KQ7 1210 aa31.21■■■□□ 2.59
FAM3A-215ENST00000447601 CC2D2AQ9P2K1 1620 aa31.21■■■□□ 2.59
FAM3A-215ENST00000447601 CFTRP13569 1480 aa31.18■■■□□ 2.58
FAM3A-215ENST00000447601 CSRNP3Q8WYN3 585 aa31.11■■■□□ 2.57
FAM3A-215ENST00000447601 TOP2BQ02880 1626 aa31.09■■■□□ 2.57
FAM3A-215ENST00000447601 PCGF6Q9BYE7 350 aa31.08■■■□□ 2.57
FAM3A-215ENST00000447601 RUSC2Q8N2Y8 1516 aa31.07■■■□□ 2.57
FAM3A-215ENST00000447601 BIVM-ERCC5R4GMW8 1640 aa31.01■■■□□ 2.55
FAM3A-215ENST00000447601 CADPSQ9ULU8 1353 aa30.97■■■□□ 2.55
FAM3A-215ENST00000447601 TNIKQ9UKE5 1360 aa30.94■■■□□ 2.54
FAM3A-215ENST00000447601 TRIM26Q12899 539 aaPredicted RBP30.94■■■□□ 2.54
FAM3A-215ENST00000447601 GOLGA3Q08378 1498 aa30.92■■■□□ 2.54
FAM3A-215ENST00000447601 PRDM2Q13029 1718 aa30.89■■■□□ 2.54
FAM3A-215ENST00000447601 CUX1P39880 1505 aa30.88■■■□□ 2.53
FAM3A-215ENST00000447601 CEP164Q9UPV0 1460 aa30.87■■■□□ 2.53
FAM3A-215ENST00000447601 KIF21BO75037 1637 aa30.83■■■□□ 2.53
FAM3A-215ENST00000447601 CEP162Q5TB80 1403 aa30.82■■■□□ 2.52
FAM3A-215ENST00000447601 UBTFP17480 764 aaKnown RBP30.78■■■□□ 2.52
FAM3A-215ENST00000447601 HRCP23327 699 aa30.66■■■□□ 2.5
FAM3A-215ENST00000447601 FANCD2Q9BXW9 1451 aa30.62■■■□□ 2.49
FAM3A-215ENST00000447601 KIF27Q86VH2 1401 aa30.62■■■□□ 2.49
FAM3A-215ENST00000447601 RAPGEF2Q9Y4G8 1499 aa30.59■■■□□ 2.49
FAM3A-215ENST00000447601 PRXQ9BXM0 1461 aa30.55■■■□□ 2.48
FAM3A-215ENST00000447601 ERICH3Q5RHP9 1530 aa30.54■■■□□ 2.48
FAM3A-215ENST00000447601 LAMC3Q9Y6N6 1575 aa30.51■■■□□ 2.47
FAM3A-215ENST00000447601 NESP48681 1621 aa30.48■■■□□ 2.47
FAM3A-215ENST00000447601 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
FAM3A-215ENST00000447601 CLIP1P30622 1438 aa30.45■■■□□ 2.47
FAM3A-215ENST00000447601 DNMBPQ6XZF7 1577 aa30.42■■■□□ 2.46
FAM3A-215ENST00000447601 CUX2O14529 1486 aa30.41■■■□□ 2.46
FAM3A-215ENST00000447601 PPARGC1BQ86YN6 1023 aaKnown RBP30.37■■■□□ 2.45
FAM3A-215ENST00000447601 TOPBP1Q92547 1522 aa30.34■■■□□ 2.45
FAM3A-215ENST00000447601 PDS5BQ9NTI5 1447 aa30.32■■■□□ 2.44
FAM3A-215ENST00000447601 IGF1RP08069 1367 aa30.29■■■□□ 2.44
FAM3A-215ENST00000447601 DNAJC5BQ9UF47 199 aa30.29■■■□□ 2.44
FAM3A-215ENST00000447601 VPS8Q8N3P4 1428 aa30.27■■■□□ 2.44
FAM3A-215ENST00000447601 POLA1P09884 1462 aaPredicted RBP30.24■■■□□ 2.43
FAM3A-215ENST00000447601 ABCA10Q8WWZ4 1543 aa30.22■■■□□ 2.43
FAM3A-215ENST00000447601 URB2Q14146 1524 aaKnown RBP30.19■■■□□ 2.42
FAM3A-215ENST00000447601 RAD54L2Q9Y4B4 1467 aa30.15■■■□□ 2.42
FAM3A-215ENST00000447601 CARMIL1Q5VZK9 1371 aa30.15■■■□□ 2.42
FAM3A-215ENST00000447601 RANGAP1P46060 587 aaPredicted RBP30.12■■■□□ 2.41
FAM3A-215ENST00000447601 ARAP1Q96P48 1450 aa30.05■■■□□ 2.4
FAM3A-215ENST00000447601 TTBK1Q5TCY1 1321 aaPredicted RBP30.04■■■□□ 2.4
FAM3A-215ENST00000447601 KIF21AQ7Z4S6 1674 aa30.03■■■□□ 2.4
FAM3A-215ENST00000447601 APLP2Q06481 763 aa30.03■■■□□ 2.4
FAM3A-215ENST00000447601 ZEB1P37275 1124 aaPredicted RBP30.02■■■□□ 2.4
FAM3A-215ENST00000447601 WDR97A6NE52 1622 aa29.97■■■□□ 2.39
FAM3A-215ENST00000447601 ARHGAP35Q9NRY4 1499 aa29.94■■■□□ 2.38
FAM3A-215ENST00000447601 CUL7Q14999 1698 aa29.94■■■□□ 2.38
FAM3A-215ENST00000447601 MRC2Q9UBG0 1479 aa29.88■■■□□ 2.37
FAM3A-215ENST00000447601 ABCA5Q8WWZ7 1642 aa29.87■■■□□ 2.37
FAM3A-215ENST00000447601 TDRD9Q8NDG6 1382 aaKnown RBP29.84■■■□□ 2.37
FAM3A-215ENST00000447601 GAPVD1Q14C86 1478 aa29.83■■■□□ 2.37
FAM3A-215ENST00000447601 TARBP1Q13395 1621 aaKnown RBP29.79■■■□□ 2.36
FAM3A-215ENST00000447601 EFCAB5A4FU69 1503 aa29.67■■■□□ 2.34
FAM3A-215ENST00000447601 WDR62O43379 1518 aa29.67■■■□□ 2.34
FAM3A-215ENST00000447601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.64■■■□□ 2.34
FAM3A-215ENST00000447601 FHAD1B1AJZ9 1412 aa29.64■■■□□ 2.34
FAM3A-215ENST00000447601 CTTNBP2Q8WZ74 1663 aa29.64■■■□□ 2.33
FAM3A-215ENST00000447601 CCER1Q8TC90 406 aaPredicted RBP29.64■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms