RNA–Protein interactions for RNA: ENST00000625293.1

TREX1-205, Transcript of three prime repair exonuclease 1, humanhuman

BASIC

Gene TREX1, Length 1,783 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-205ENST00000625293 NISCHQ9Y2I1 1504 aa43.64■■■■■ 4.58
TREX1-205ENST00000625293 CCDC180Q9P1Z9 1646 aa38.22■■■■□ 3.71
TREX1-205ENST00000625293 ABCC9O60706 1549 aa37.64■■■■□ 3.62
TREX1-205ENST00000625293 ZCCHC6Q5VYS8 1495 aaKnown RBP36.78■■■■□ 3.48
TREX1-205ENST00000625293 DCAF8L2P0C7V8 631 aa36.38■■■■□ 3.41
TREX1-205ENST00000625293 DCAF1Q9Y4B6 1507 aa36.09■■■■□ 3.37
TREX1-205ENST00000625293 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
TREX1-205ENST00000625293 NACADO15069 1562 aa35.98■■■■□ 3.35
TREX1-205ENST00000625293 SHROOM4Q9ULL8 1493 aa35.89■■■■□ 3.34
TREX1-205ENST00000625293 MYO15BQ96JP2 1530 aa35.72■■■■□ 3.31
TREX1-205ENST00000625293 PABPN1Q86U42 306 aaKnown RBP eCLIP35.3■■■■□ 3.24
TREX1-205ENST00000625293 UNC13AQ9UPW8 1703 aa35.29■■■■□ 3.24
TREX1-205ENST00000625293 SCRIBQ14160 1630 aa35.11■■■■□ 3.21
TREX1-205ENST00000625293 BICRAQ9NZM4 1560 aa35.05■■■■□ 3.2
TREX1-205ENST00000625293 SUPT5HO00267 1087 aaKnown RBP34.72■■■■□ 3.15
TREX1-205ENST00000625293 DNAJC5BQ9UF47 199 aa34.64■■■■□ 3.14
TREX1-205ENST00000625293 EIF4G1Q04637 1599 aaKnown RBP34.08■■■■□ 3.05
TREX1-205ENST00000625293 RSF1Q96T23 1441 aaPredicted RBP34.06■■■■□ 3.04
TREX1-205ENST00000625293 CC2D2AQ9P2K1 1620 aa33.96■■■■□ 3.03
TREX1-205ENST00000625293 CECR2Q9BXF3 1484 aa33.91■■■■□ 3.02
TREX1-205ENST00000625293 MROH2BQ7Z745 1585 aa33.75■■■□□ 2.99
TREX1-205ENST00000625293 BAZ1AQ9NRL2 1556 aaPredicted RBP33.63■■■□□ 2.97
TREX1-205ENST00000625293 CHIC1Q5VXU3 224 aa33.55■■■□□ 2.96
TREX1-205ENST00000625293 SMARCA4P51532 1647 aa33.51■■■□□ 2.95
TREX1-205ENST00000625293 WIZO95785 1651 aa33.47■■■□□ 2.95
TREX1-205ENST00000625293 ATAD2BQ9ULI0 1458 aa33.36■■■□□ 2.93
TREX1-205ENST00000625293 NCAPD3P42695 1498 aa33.28■■■□□ 2.92
TREX1-205ENST00000625293 SMARCA2P51531 1590 aa33.2■■■□□ 2.91
TREX1-205ENST00000625293 TOP2AP11388 1531 aaKnown RBP33.14■■■□□ 2.9
TREX1-205ENST00000625293 PEG3Q9GZU2 1588 aa33.1■■■□□ 2.89
TREX1-205ENST00000625293 BAZ1BQ9UIG0 1483 aaKnown RBP33.06■■■□□ 2.88
TREX1-205ENST00000625293 HMGXB3Q12766 1538 aa33.04■■■□□ 2.88
TREX1-205ENST00000625293 CCDC88BA6NC98 1476 aa32.82■■■□□ 2.84
TREX1-205ENST00000625293 NESP48681 1621 aa32.63■■■□□ 2.81
TREX1-205ENST00000625293 TRIM41Q8WV44 630 aa32.6■■■□□ 2.81
TREX1-205ENST00000625293 CADPSQ9ULU8 1353 aa32.36■■■□□ 2.77
TREX1-205ENST00000625293 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
TREX1-205ENST00000625293 LAMC3Q9Y6N6 1575 aa32.32■■■□□ 2.76
TREX1-205ENST00000625293 ABCC8Q09428 1581 aa32.27■■■□□ 2.76
TREX1-205ENST00000625293 LOC105371045A0A1W2PR82 267 aa32.27■■■□□ 2.76
TREX1-205ENST00000625293 CFTRP13569 1480 aa32.15■■■□□ 2.74
TREX1-205ENST00000625293 PDS5BQ9NTI5 1447 aa32.15■■■□□ 2.74
TREX1-205ENST00000625293 KIF21AQ7Z4S6 1674 aa32.11■■■□□ 2.73
TREX1-205ENST00000625293 FAM9AQ8IZU1 332 aaPredicted RBP32.03■■■□□ 2.72
TREX1-205ENST00000625293 WRNQ14191 1432 aaPredicted RBP eCLIP32■■■□□ 2.71
TREX1-205ENST00000625293 FANCD2Q9BXW9 1451 aa31.99■■■□□ 2.71
TREX1-205ENST00000625293 THOC2Q8NI27 1593 aaKnown RBP31.94■■■□□ 2.7
TREX1-205ENST00000625293 CEP164Q9UPV0 1460 aa31.89■■■□□ 2.7
TREX1-205ENST00000625293 SYNJ1O43426 1573 aa31.88■■■□□ 2.69
TREX1-205ENST00000625293 CUX2O14529 1486 aa31.86■■■□□ 2.69
TREX1-205ENST00000625293 MRC2Q9UBG0 1479 aa31.82■■■□□ 2.68
TREX1-205ENST00000625293 SOGA1O94964 1423 aa31.78■■■□□ 2.68
TREX1-205ENST00000625293 PRDM2Q13029 1718 aa31.77■■■□□ 2.68
TREX1-205ENST00000625293 EEA1Q15075 1411 aa31.76■■■□□ 2.68
TREX1-205ENST00000625293 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.66
TREX1-205ENST00000625293 WDR62O43379 1518 aa31.69■■■□□ 2.66
TREX1-205ENST00000625293 TOP2BQ02880 1626 aa31.69■■■□□ 2.66
TREX1-205ENST00000625293 RUSC2Q8N2Y8 1516 aa31.65■■■□□ 2.66
TREX1-205ENST00000625293 BIVM-ERCC5R4GMW8 1640 aa31.65■■■□□ 2.66
TREX1-205ENST00000625293 CSRNP3Q8WYN3 585 aa31.55■■■□□ 2.64
TREX1-205ENST00000625293 EHMT2Q96KQ7 1210 aa31.54■■■□□ 2.64
TREX1-205ENST00000625293 CUX1P39880 1505 aa31.52■■■□□ 2.64
TREX1-205ENST00000625293 TOPBP1Q92547 1522 aa31.48■■■□□ 2.63
TREX1-205ENST00000625293 DNMBPQ6XZF7 1577 aa31.38■■■□□ 2.61
TREX1-205ENST00000625293 TNIKQ9UKE5 1360 aa31.37■■■□□ 2.61
TREX1-205ENST00000625293 GOLGA3Q08378 1498 aa31.36■■■□□ 2.61
TREX1-205ENST00000625293 KIF21BO75037 1637 aa31.34■■■□□ 2.61
TREX1-205ENST00000625293 POLA1P09884 1462 aaPredicted RBP31.23■■■□□ 2.59
TREX1-205ENST00000625293 CEP162Q5TB80 1403 aa31.23■■■□□ 2.59
TREX1-205ENST00000625293 PCGF6Q9BYE7 350 aa31.22■■■□□ 2.59
TREX1-205ENST00000625293 ZNF608Q9ULD9 1512 aaPredicted RBP31.21■■■□□ 2.59
TREX1-205ENST00000625293 IFT140Q96RY7 1462 aa31.2■■■□□ 2.59
TREX1-205ENST00000625293 RAD54L2Q9Y4B4 1467 aa31.19■■■□□ 2.58
TREX1-205ENST00000625293 FGD5Q6ZNL6 1462 aa31.18■■■□□ 2.58
TREX1-205ENST00000625293 KIF27Q86VH2 1401 aa31.13■■■□□ 2.57
TREX1-205ENST00000625293 UBTFP17480 764 aaKnown RBP31.12■■■□□ 2.57
TREX1-205ENST00000625293 TRIM26Q12899 539 aaPredicted RBP31.12■■■□□ 2.57
TREX1-205ENST00000625293 RAPGEF2Q9Y4G8 1499 aa31.11■■■□□ 2.57
TREX1-205ENST00000625293 TARBP1Q13395 1621 aaKnown RBP31.11■■■□□ 2.57
TREX1-205ENST00000625293 PRXQ9BXM0 1461 aa31.1■■■□□ 2.57
TREX1-205ENST00000625293 AQRO60306 1485 aaKnown RBP eCLIP31.06■■■□□ 2.56
TREX1-205ENST00000625293 ERICH3Q5RHP9 1530 aa31.05■■■□□ 2.56
TREX1-205ENST00000625293 TDRD9Q8NDG6 1382 aaKnown RBP31.03■■■□□ 2.56
TREX1-205ENST00000625293 DNAJC5Q9H3Z4 198 aa30.98■■■□□ 2.55
TREX1-205ENST00000625293 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
TREX1-205ENST00000625293 CLIP1P30622 1438 aa30.87■■■□□ 2.53
TREX1-205ENST00000625293 IGF1RP08069 1367 aa30.85■■■□□ 2.53
TREX1-205ENST00000625293 ABCA10Q8WWZ4 1543 aa30.83■■■□□ 2.53
TREX1-205ENST00000625293 WDR97A6NE52 1622 aa30.81■■■□□ 2.52
TREX1-205ENST00000625293 HRCP23327 699 aa30.74■■■□□ 2.51
TREX1-205ENST00000625293 GAPVD1Q14C86 1478 aa30.74■■■□□ 2.51
TREX1-205ENST00000625293 FBLN2P98095 1184 aa30.73■■■□□ 2.51
TREX1-205ENST00000625293 OSCARQ8IYS5 282 aa30.71■■■□□ 2.51
TREX1-205ENST00000625293 SNAPC4Q5SXM2 1469 aa30.69■■■□□ 2.5
TREX1-205ENST00000625293 VPS8Q8N3P4 1428 aa30.68■■■□□ 2.5
TREX1-205ENST00000625293 GRIN2BQ13224 1484 aa30.68■■■□□ 2.5
TREX1-205ENST00000625293 CARMIL1Q5VZK9 1371 aa30.67■■■□□ 2.5
TREX1-205ENST00000625293 PPARGC1BQ86YN6 1023 aaKnown RBP30.67■■■□□ 2.5
TREX1-205ENST00000625293 ABCA5Q8WWZ7 1642 aa30.67■■■□□ 2.5
TREX1-205ENST00000625293 PBRM1Q86U86 1689 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms