Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.15■□□□□ 0.983e-6■■■□□ 15.4
YBX3P16989 PPP1R2-205ENST00000462906 1668 ntTSL 219.41■□□□□ 0.79e-8■■■□□ 15.4
YBX3P16989 MPI-210ENST00000564633 583 ntTSL 318.87■□□□□ 0.613e-6■■■□□ 15.4
YBX3P16989 MPI-206ENST00000562800 407 ntTSL 316.47■□□□□ 0.233e-6■■■□□ 15.4
YBX3P16989 MPI-212ENST00000565576 1148 ntTSL 2 BASIC16.14■□□□□ 0.173e-6■■■□□ 15.4
YBX3P16989 MPI-207ENST00000563422 1481 ntTSL 1 (best) BASIC15.2■□□□□ 0.023e-6■■■□□ 15.4
YBX3P16989 MPI-222ENST00000568907 537 ntTSL 415.08■□□□□ 03e-6■■■□□ 15.4
YBX3P16989 MPI-215ENST00000567116 586 ntTSL 215.08■□□□□ 03e-6■■■□□ 15.4
YBX3P16989 MPI-220ENST00000568828 578 ntTSL 414.63□□□□□ -0.073e-6■■■□□ 15.4
YBX3P16989 MPI-216ENST00000567132 559 ntTSL 414.61□□□□□ -0.073e-6■■■□□ 15.4
YBX3P16989 MPI-223ENST00000569233 555 ntTSL 414.18□□□□□ -0.143e-6■■■□□ 15.4
YBX3P16989 CSNK2A2-202ENST00000562367 687 ntTSL 39.62□□□□□ -0.872e-8■■■□□ 15.4
YBX3P16989 ABCF2-203ENST00000441774 941 ntTSL 326.88■■□□□ 1.894e-7■■■□□ 15.4
YBX3P16989 ABCF2-204ENST00000468073 1031 ntTSL 213.46□□□□□ -0.254e-7■■■□□ 15.4
YBX3P16989 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.865e-9■■■□□ 15.4
YBX3P16989 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.825e-9■■■□□ 15.4
YBX3P16989 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.515e-9■■■□□ 15.4
YBX3P16989 LMO4-203ENST00000489303 952 ntTSL 218.18■□□□□ 0.55e-9■■■□□ 15.4
YBX3P16989 PI4KA-212ENST00000484220 646 ntTSL 314.87□□□□□ -0.035e-9■■■□□ 15.4
YBX3P16989 PI4KA-205ENST00000466162 589 ntTSL 411.81□□□□□ -0.525e-9■■■□□ 15.4
YBX3P16989 HEATR1-204ENST00000483073 654 ntTSL 311.1□□□□□ -0.635e-9■■■□□ 15.4
YBX3P16989 MBOAT2-204ENST00000471753 1227 ntTSL 510.67□□□□□ -0.78e-7■■■□□ 15.4
YBX3P16989 STAR-202ENST00000520114 3448 ntTSL 210.61□□□□□ -0.715e-9■■■□□ 15.4
YBX3P16989 EIF3L-211ENST00000476955 583 ntTSL 511.18□□□□□ -0.627e-11■■■□□ 15.4
YBX3P16989 EPB41L1-204ENST00000373945 763 ntTSL 222.97■■□□□ 1.272e-6■■■□□ 15.4
YBX3P16989 EPB41L1-209ENST00000430276 896 ntTSL 520.28■□□□□ 0.842e-6■■■□□ 15.4
YBX3P16989 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.765e-7■■■□□ 15.4
YBX3P16989 PFN1-202ENST00000572383 539 ntTSL 323.59■■□□□ 1.373e-27■■■□□ 15.4
YBX3P16989 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.393e-17■■■□□ 15.4
YBX3P16989 UBE2B-207ENST00000510021 415 ntTSL 223.37■■□□□ 1.333e-17■■■□□ 15.4
YBX3P16989 UBE2B-208ENST00000511807 818 ntTSL 315.29■□□□□ 0.043e-17■■■□□ 15.4
YBX3P16989 UBE2B-205ENST00000506787 500 ntTSL 315.1■□□□□ 0.013e-17■■■□□ 15.4
YBX3P16989 UBE2B-206ENST00000507277 644 ntTSL 513.43□□□□□ -0.263e-17■■■□□ 15.4
YBX3P16989 UBE2B-202ENST00000499038 682 ntTSL 37.59□□□□□ -1.193e-17■■■□□ 15.4
YBX3P16989 UBE2B-203ENST00000503080 657 ntTSL 27□□□□□ -1.293e-17■■■□□ 15.4
YBX3P16989 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.23■□□□□ 0.359e-11■■■□□ 15.4
YBX3P16989 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.049e-11■■■□□ 15.4
YBX3P16989 IMMT-206ENST00000442664 2627 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.319e-11■■■□□ 15.4
YBX3P16989 IMMT-202ENST00000409051 2515 ntTSL 2 BASIC12.99□□□□□ -0.339e-11■■■□□ 15.4
YBX3P16989 IMMT-207ENST00000449247 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.449e-11■■■□□ 15.4
YBX3P16989 DHX9-201ENST00000367549 4240 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.852e-9■■■□□ 15.4
YBX3P16989 EIF3G-210ENST00000590158 1034 ntTSL 220.59■□□□□ 0.895e-10■■■□□ 15.4
YBX3P16989 EIF3G-213ENST00000593054 453 ntTSL 514.84□□□□□ -0.035e-10■■■□□ 15.4
YBX3P16989 NCAPD3-208ENST00000530396 1521 ntAPPRIS ALT2 TSL 312.47□□□□□ -0.414e-7■■■□□ 15.4
YBX3P16989 CSNK2A2-206ENST00000567730 947 ntTSL 39.28□□□□□ -0.922e-7■■■□□ 15.4
YBX3P16989 ETFB-205ENST00000596253 575 ntTSL 320.46■□□□□ 0.876e-9■■■□□ 15.4
YBX3P16989 AC108516.2-201ENST00000508163 349 ntTSL 5 BASIC9.99□□□□□ -0.814e-12■■■□□ 15.4
YBX3P16989 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.384e-6■■■□□ 15.4
YBX3P16989 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.684e-6■■■□□ 15.4
YBX3P16989 MTHFD2-201ENST00000394053 4456 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.653e-8■■■□□ 15.3
YBX3P16989 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.147e-8■■■□□ 15.3
YBX3P16989 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.117e-8■■■□□ 15.3
YBX3P16989 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.017e-8■■■□□ 15.3
YBX3P16989 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.85□□□□□ -1.157e-8■■■□□ 15.3
YBX3P16989 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.61□□□□□ -1.197e-8■■■□□ 15.3
YBX3P16989 WDR82-203ENST00000469000 587 ntTSL 522.58■■□□□ 1.212e-6■■■□□ 15.3
YBX3P16989 WDR82-202ENST00000463624 574 ntTSL 418.05■□□□□ 0.482e-6■■■□□ 15.3
YBX3P16989 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.437e-7■■■□□ 15.3
YBX3P16989 TUBGCP4-210ENST00000565548 762 ntTSL 58.68□□□□□ -1.027e-7■■■□□ 15.3
YBX3P16989 ARIH2-231ENST00000498314 649 ntTSL 422.4■■□□□ 1.189e-7■■■□□ 15.3
YBX3P16989 ARIH2-222ENST00000483333 674 ntTSL 521.45■■□□□ 1.029e-7■■■□□ 15.3
YBX3P16989 ARIH2-220ENST00000482342 441 ntTSL 210.83□□□□□ -0.689e-7■■■□□ 15.3
YBX3P16989 NCAPD3-213ENST00000534532 5539 ntTSL 216.16■□□□□ 0.183e-7■■■□□ 15.3
YBX3P16989 NCAPD3-203ENST00000525964 5025 ntTSL 1 (best)14.84□□□□□ -0.033e-7■■■□□ 15.3
YBX3P16989 NCAPD3-214ENST00000534548 5061 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.773e-7■■■□□ 15.3
YBX3P16989 DDX17-209ENST00000479734 441 ntTSL 420.63■□□□□ 0.892e-22■■■□□ 15.3
YBX3P16989 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.582e-22■■■□□ 15.3
YBX3P16989 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.582e-22■■■□□ 15.3
YBX3P16989 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)17.68■□□□□ 0.422e-22■■■□□ 15.3
YBX3P16989 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -02e-22■■■□□ 15.3
YBX3P16989 DDX17-205ENST00000432525 1354 ntTSL 213.55□□□□□ -0.242e-22■■■□□ 15.3
YBX3P16989 DDX17-201ENST00000216019 6441 ntTSL 1 (best)13.23□□□□□ -0.292e-22■■■□□ 15.3
YBX3P16989 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.031e-6■■■□□ 15.3
YBX3P16989 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.55■■■■□ 3.282e-6■■■□□ 15.3
YBX3P16989 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.772e-6■■■□□ 15.3
YBX3P16989 COPRS-203ENST00000496655 1062 ntTSL 1 (best)30.09■■■□□ 2.412e-6■■■□□ 15.3
YBX3P16989 PRADC1-203ENST00000480093 600 ntTSL 532.26■■■□□ 2.757e-8■■■□□ 15.3
YBX3P16989 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.327e-8■■■□□ 15.3
YBX3P16989 KIDINS220-210ENST00000496383 3220 ntTSL 58.7□□□□□ -1.028e-7■■■□□ 15.3
YBX3P16989 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.8□□□□□ -1.168e-7■■■□□ 15.3
YBX3P16989 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.188e-7■■■□□ 15.3
YBX3P16989 KIDINS220-212ENST00000569008 8735 ntTSL 56.1□□□□□ -1.438e-7■■■□□ 15.3
YBX3P16989 KIDINS220-208ENST00000488729 5988 ntTSL 1 (best)5.62□□□□□ -1.518e-7■■■□□ 15.3
YBX3P16989 OIP5-202ENST00000560640 485 ntTSL 328.88■■■□□ 2.214e-11■■■□□ 15.3
YBX3P16989 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.924e-11■■■□□ 15.3
YBX3P16989 C10orf10-203ENST00000496638 868 ntTSL 327.68■■■□□ 2.024e-9■■■□□ 15.3
YBX3P16989 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.334e-9■■■□□ 15.3
YBX3P16989 SEPT5-203ENST00000406172 1996 ntTSL 529.97■■■□□ 2.394e-7■■■□□ 15.3
YBX3P16989 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC28.23■■■□□ 2.114e-7■■■□□ 15.3
YBX3P16989 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.814e-7■■■□□ 15.3
YBX3P16989 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC22.77■■□□□ 1.244e-7■■■□□ 15.3
YBX3P16989 SEPT5-205ENST00000412544 1108 ntTSL 521.94■■□□□ 1.14e-7■■■□□ 15.3
YBX3P16989 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.06■□□□□ 0.644e-7■■■□□ 15.3
YBX3P16989 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)16.54■□□□□ 0.244e-7■■■□□ 15.3
YBX3P16989 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)15.09■□□□□ 0.014e-7■■■□□ 15.3
YBX3P16989 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.157e-7■■■□□ 15.3
YBX3P16989 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.92□□□□□ -1.37e-7■■■□□ 15.3
YBX3P16989 QARS-248ENST00000636669 2410 ntTSL 513.8□□□□□ -0.29e-10■■■□□ 15.3
YBX3P16989 QARS-209ENST00000464962 2362 ntTSL 1 (best) BASIC13.32□□□□□ -0.289e-10■■■□□ 15.3
YBX3P16989 QARS-247ENST00000636018 2171 ntTSL 512.34□□□□□ -0.439e-10■■■□□ 15.3
Retrieved 100 of 29,075 protein–RNA pairs in 438.9 ms