RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	DCAF8L2	P0C7V8	631 aa		28.05	■■■□□ 2.08
NCAPD3-213	ENST00000534532	NISCH	Q9Y2I1	1504 aa		26.46	■■□□□ 1.83
NCAPD3-213	ENST00000534532	SUPT5H	O00267	1087 aa	Known RBP	26.05	■■□□□ 1.76
NCAPD3-213	ENST00000534532	SHROOM4	Q9ULL8	1493 aa		25.63	■■□□□ 1.69
NCAPD3-213	ENST00000534532	EHMT2	Q96KQ7	1210 aa		25.17	■■□□□ 1.62
NCAPD3-213	ENST00000534532	FAM9A	Q8IZU1	332 aa	Predicted RBP	25.16	■■□□□ 1.62
NCAPD3-213	ENST00000534532	APLP2	Q06481	763 aa		25.05	■■□□□ 1.6
NCAPD3-213	ENST00000534532	RANGAP1	P46060	587 aa	Predicted RBP	24.32	■■□□□ 1.48
NCAPD3-213	ENST00000534532	ATP1B4	Q9UN42	357 aa	Predicted RBP	24.28	■■□□□ 1.48
NCAPD3-213	ENST00000534532	TTBK1	Q5TCY1	1321 aa	Predicted RBP	24.24	■■□□□ 1.47
NCAPD3-213	ENST00000534532	TRIM41	Q8WV44	630 aa		24.24	■■□□□ 1.47
NCAPD3-213	ENST00000534532	PELP1	Q8IZL8	1130 aa	Known RBP	24.24	■■□□□ 1.47
NCAPD3-213	ENST00000534532	UBTF	P17480	764 aa	Known RBP	24.06	■■□□□ 1.44
NCAPD3-213	ENST00000534532	PCGF6	Q9BYE7	350 aa		23.86	■■□□□ 1.41
NCAPD3-213	ENST00000534532	MYT1L	Q9UL68	1186 aa		23.65	■■□□□ 1.38
NCAPD3-213	ENST00000534532	CCER1	Q8TC90	406 aa	Predicted RBP	23.64	■■□□□ 1.38
NCAPD3-213	ENST00000534532	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	23.61	■■□□□ 1.37
NCAPD3-213	ENST00000534532	HNRNPUL2	Q1KMD3	747 aa	Known RBP	23.61	■■□□□ 1.37
NCAPD3-213	ENST00000534532	ZEB1	P37275	1124 aa	Predicted RBP	23.53	■■□□□ 1.36
NCAPD3-213	ENST00000534532	ABCC9	O60706	1549 aa		23.34	■■□□□ 1.33
NCAPD3-213	ENST00000534532	CENPB	P07199	599 aa	Predicted RBP	23.29	■■□□□ 1.32
NCAPD3-213	ENST00000534532	PABPN1	Q86U42	306 aa	Known RBP eCLIP	23.26	■■□□□ 1.31
NCAPD3-213	ENST00000534532	PPARGC1B	Q86YN6	1023 aa	Known RBP	23.17	■■□□□ 1.3
NCAPD3-213	ENST00000534532	ITGAE	P38570	1179 aa		23.17	■■□□□ 1.3
NCAPD3-213	ENST00000534532	ERICH6	Q7L0X2	663 aa		23.09	■■□□□ 1.29
NCAPD3-213	ENST00000534532	NEFL	P07196	543 aa		23.07	■■□□□ 1.28
NCAPD3-213	ENST00000534532	CHIC1	Q5VXU3	224 aa		23.01	■■□□□ 1.27
NCAPD3-213	ENST00000534532	POLR3GL	Q9BT43	218 aa		22.99	■■□□□ 1.27
NCAPD3-213	ENST00000534532	TRIM26	Q12899	539 aa	Predicted RBP	22.89	■■□□□ 1.25
NCAPD3-213	ENST00000534532	FBLN2	P98095	1184 aa		22.85	■■□□□ 1.25
NCAPD3-213	ENST00000534532	YTHDC1	Q96MU7	727 aa	Known RBP	22.79	■■□□□ 1.24
NCAPD3-213	ENST00000534532	SLC4A1AP	Q9BWU0	796 aa	Known RBP	22.79	■■□□□ 1.24
NCAPD3-213	ENST00000534532	LOC105371045	A0A1W2PR82	267 aa		22.74	■■□□□ 1.23
NCAPD3-213	ENST00000534532	FAM50A	Q14320	339 aa	Known RBP	22.68	■■□□□ 1.22
NCAPD3-213	ENST00000534532	TRIM52	Q96A61	297 aa		22.61	■■□□□ 1.21
NCAPD3-213	ENST00000534532	CNGB1	Q14028	1251 aa	Predicted RBP	22.61	■■□□□ 1.21
NCAPD3-213	ENST00000534532	DAXX	Q9UER7	740 aa	Predicted RBP	22.45	■■□□□ 1.18
NCAPD3-213	ENST00000534532	BCAN	Q96GW7	911 aa		22.34	■■□□□ 1.17
NCAPD3-213	ENST00000534532	HRC	P23327	699 aa		22.31	■■□□□ 1.16
NCAPD3-213	ENST00000534532	CDK11A	Q9UQ88	783 aa	Predicted RBP	22.3	■■□□□ 1.16
NCAPD3-213	ENST00000534532	ESF1	Q9H501	851 aa	Known RBP	22.29	■■□□□ 1.16
NCAPD3-213	ENST00000534532	NPM1	P06748	294 aa	Known RBP eCLIP	22.28	■■□□□ 1.16
NCAPD3-213	ENST00000534532	ZNF326	Q5BKZ1	582 aa	Known RBP	22.27	■■□□□ 1.16
NCAPD3-213	ENST00000534532	ARID3C	A6NKF2	412 aa		22.26	■■□□□ 1.15
NCAPD3-213	ENST00000534532	NEUROD1	Q13562	356 aa		22.26	■■□□□ 1.15
NCAPD3-213	ENST00000534532	P3H3	Q8IVL6	736 aa		22.26	■■□□□ 1.15
NCAPD3-213	ENST00000534532	SCRIB	Q14160	1630 aa		22.18	■■□□□ 1.14
NCAPD3-213	ENST00000534532	ZNF777	Q9ULD5	760 aa	Predicted RBP	22.18	■■□□□ 1.14
NCAPD3-213	ENST00000534532	CSRNP3	Q8WYN3	585 aa		22.17	■■□□□ 1.14
NCAPD3-213	ENST00000534532	CLSPN	Q9HAW4	1339 aa		22.13	■■□□□ 1.13
NCAPD3-213	ENST00000534532	NEFM	P07197	916 aa		22.05	■■□□□ 1.12
NCAPD3-213	ENST00000534532	SLC24A1	O60721	1099 aa		22.02	■■□□□ 1.12
NCAPD3-213	ENST00000534532	STAG3	Q9UJ98	1225 aa		22.02	■■□□□ 1.12
NCAPD3-213	ENST00000534532	ZBTB47	Q9UFB7	747 aa	Predicted RBP	21.99	■■□□□ 1.11
NCAPD3-213	ENST00000534532	PLPPR3	Q6T4P5	718 aa		21.94	■■□□□ 1.1
NCAPD3-213	ENST00000534532	ANP32C	O43423	234 aa		21.92	■■□□□ 1.1
NCAPD3-213	ENST00000534532	DIEXF	Q68CQ4	756 aa	Known RBP	21.92	■■□□□ 1.1
NCAPD3-213	ENST00000534532	CHGA	P10645	457 aa	Known RBP	21.91	■■□□□ 1.1
NCAPD3-213	ENST00000534532	CHMP7	Q8WUX9	453 aa	Predicted RBP	21.89	■■□□□ 1.09
NCAPD3-213	ENST00000534532	ZNF316	A6NFI3	1004 aa	Predicted RBP	21.87	■■□□□ 1.09
NCAPD3-213	ENST00000534532	CANX	P27824	592 aa	Known RBP	21.78	■■□□□ 1.08
NCAPD3-213	ENST00000534532	ZCCHC6	Q5VYS8	1495 aa	Known RBP	21.77	■■□□□ 1.08
NCAPD3-213	ENST00000534532	RB1CC1	Q8TDY2	1594 aa		21.74	■■□□□ 1.07
NCAPD3-213	ENST00000534532	TSPY4	P0CV99	314 aa		21.71	■■□□□ 1.07
NCAPD3-213	ENST00000534532	TSPY10	P0CW01	314 aa		21.71	■■□□□ 1.07
NCAPD3-213	ENST00000534532	CCDC180	Q9P1Z9	1646 aa		21.66	■■□□□ 1.06
NCAPD3-213	ENST00000534532	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	21.66	■■□□□ 1.06	3e-6	■■■□□ 16.6
NCAPD3-213	ENST00000534532	BCL11A	Q9H165	835 aa		21.61	■■□□□ 1.05
NCAPD3-213	ENST00000534532	RTL5	Q5HYW3	569 aa	Predicted RBP	21.6	■■□□□ 1.05
NCAPD3-213	ENST00000534532	TONSL	Q96HA7	1378 aa		21.58	■■□□□ 1.05
NCAPD3-213	ENST00000534532	CHIC2	Q9UKJ5	165 aa		21.56	■■□□□ 1.04
NCAPD3-213	ENST00000534532	MTUS2	Q5JR59	1369 aa		21.55	■■□□□ 1.04
NCAPD3-213	ENST00000534532	MYT1	Q01538	1121 aa		21.52	■■□□□ 1.04
NCAPD3-213	ENST00000534532	KCNH8	Q96L42	1107 aa		21.51	■■□□□ 1.03
NCAPD3-213	ENST00000534532	PLEKHD1	A6NEE1	506 aa		21.49	■■□□□ 1.03
NCAPD3-213	ENST00000534532	SCAF1	Q9H7N4	1312 aa	Known RBP	21.44	■■□□□ 1.02
NCAPD3-213	ENST00000534532	ERCC6	Q03468	1493 aa		21.43	■■□□□ 1.02
NCAPD3-213	ENST00000534532	PPP1R15A	O75807	674 aa	Predicted RBP	21.43	■■□□□ 1.02
NCAPD3-213	ENST00000534532	ARID4B	Q4LE39	1312 aa	Predicted RBP	21.41	■■□□□ 1.02
NCAPD3-213	ENST00000534532	NACAD	O15069	1562 aa		21.41	■■□□□ 1.02
NCAPD3-213	ENST00000534532	BAZ1B	Q9UIG0	1483 aa	Known RBP	21.38	■■□□□ 1.01
NCAPD3-213	ENST00000534532	C14orf37	Q86TY3	774 aa		21.36	■■□□□ 1.01
NCAPD3-213	ENST00000534532	KDM2A	Q9Y2K7	1162 aa		21.34	■■□□□ 1.01
NCAPD3-213	ENST00000534532	RSF1	Q96T23	1441 aa	Predicted RBP	21.32	■■□□□ 1
NCAPD3-213	ENST00000534532	NPM2	Q86SE8	214 aa	Known RBP	21.29	■■□□□ 1
NCAPD3-213	ENST00000534532		A0A0G2JS52	829 aa		21.29	■■□□□ 1
NCAPD3-213	ENST00000534532	CLIP1	P30622	1438 aa		21.27	■■□□□ 1
NCAPD3-213	ENST00000534532	ACIN1	Q9UKV3	1341 aa	Known RBP	21.24	■□□□□ 0.99
NCAPD3-213	ENST00000534532	WDR43	Q15061	677 aa	Known RBP eCLIP	21.21	■□□□□ 0.99
NCAPD3-213	ENST00000534532	CFDP1	Q9UEE9	299 aa	Predicted RBP	21.21	■□□□□ 0.99
NCAPD3-213	ENST00000534532	EEA1	Q15075	1411 aa		21.21	■□□□□ 0.99
NCAPD3-213	ENST00000534532	TMC1	Q8TDI8	760 aa		21.2	■□□□□ 0.98
NCAPD3-213	ENST00000534532	RRP7BP	Q9NSQ0	103 aa		21.2	■□□□□ 0.98
NCAPD3-213	ENST00000534532	KIF27	Q86VH2	1401 aa		21.2	■□□□□ 0.98
NCAPD3-213	ENST00000534532	HAP1	P54257	671 aa	Predicted RBP	21.2	■□□□□ 0.98
NCAPD3-213	ENST00000534532	ZBTB7C	A1YPR0	619 aa		21.2	■□□□□ 0.98
NCAPD3-213	ENST00000534532	TRH	P20396	242 aa	Predicted RBP	21.19	■□□□□ 0.98
NCAPD3-213	ENST00000534532	WRN	Q14191	1432 aa	Predicted RBP eCLIP	21.19	■□□□□ 0.98
NCAPD3-213	ENST00000534532	SENP3	Q9H4L4	574 aa	Predicted RBP	21.16	■□□□□ 0.98
NCAPD3-213	ENST00000534532	PLEKHG5	O94827	1062 aa		21.15	■□□□□ 0.98

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms