RNA–Protein interactions for RNA: ENST00000525964.6

NCAPD3-203, Transcript of non-SMC condensin II complex subunit D3, humanhuman

TSL 1 (best)

Gene NCAPD3, Length 5,025 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCAPD3-203ENST00000525964 DCAF8L2P0C7V8 631 aa25.38■■□□□ 1.65
NCAPD3-203ENST00000525964 SUPT5HO00267 1087 aaKnown RBP23.84■■□□□ 1.41
NCAPD3-203ENST00000525964 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.41
NCAPD3-203ENST00000525964 SHROOM4Q9ULL8 1493 aa23.32■■□□□ 1.32
NCAPD3-203ENST00000525964 EHMT2Q96KQ7 1210 aa23■■□□□ 1.27
NCAPD3-203ENST00000525964 APLP2Q06481 763 aa22.94■■□□□ 1.26
NCAPD3-203ENST00000525964 FAM9AQ8IZU1 332 aaPredicted RBP22.83■■□□□ 1.24
NCAPD3-203ENST00000525964 PELP1Q8IZL8 1130 aaKnown RBP22.66■■□□□ 1.22
NCAPD3-203ENST00000525964 TTBK1Q5TCY1 1321 aaPredicted RBP22.21■■□□□ 1.15
NCAPD3-203ENST00000525964 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
NCAPD3-203ENST00000525964 RANGAP1P46060 587 aaPredicted RBP22.14■■□□□ 1.14
NCAPD3-203ENST00000525964 ATP1B4Q9UN42 357 aaPredicted RBP22.09■■□□□ 1.13
NCAPD3-203ENST00000525964 PCGF6Q9BYE7 350 aa22.05■■□□□ 1.12
NCAPD3-203ENST00000525964 UBTFP17480 764 aaKnown RBP21.97■■□□□ 1.11
NCAPD3-203ENST00000525964 ZEB1P37275 1124 aaPredicted RBP21.87■■□□□ 1.09
NCAPD3-203ENST00000525964 CCER1Q8TC90 406 aaPredicted RBP21.85■■□□□ 1.09
NCAPD3-203ENST00000525964 CENPBP07199 599 aaPredicted RBP21.77■■□□□ 1.07
NCAPD3-203ENST00000525964 ERICH6Q7L0X2 663 aa21.58■■□□□ 1.05
NCAPD3-203ENST00000525964 NEFLP07196 543 aa21.45■■□□□ 1.02
NCAPD3-203ENST00000525964 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.41■■□□□ 1.02
NCAPD3-203ENST00000525964 HNRNPUL2Q1KMD3 747 aaKnown RBP21.41■■□□□ 1.02
NCAPD3-203ENST00000525964 MYT1LQ9UL68 1186 aa21.41■■□□□ 1.02
NCAPD3-203ENST00000525964 PPARGC1BQ86YN6 1023 aaKnown RBP21.27■■□□□ 1
NCAPD3-203ENST00000525964 ITGAEP38570 1179 aa21.2■□□□□ 0.98
NCAPD3-203ENST00000525964 TRIM26Q12899 539 aaPredicted RBP21.19■□□□□ 0.98
NCAPD3-203ENST00000525964 YTHDC1Q96MU7 727 aaKnown RBP21.17■□□□□ 0.98
NCAPD3-203ENST00000525964 POLR3GLQ9BT43 218 aa21.07■□□□□ 0.96
NCAPD3-203ENST00000525964 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
NCAPD3-203ENST00000525964 LOC105371045A0A1W2PR82 267 aa20.9■□□□□ 0.94
NCAPD3-203ENST00000525964 DAXXQ9UER7 740 aaPredicted RBP20.86■□□□□ 0.93
NCAPD3-203ENST00000525964 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.92
NCAPD3-203ENST00000525964 ABCC9O60706 1549 aa20.82■□□□□ 0.92
NCAPD3-203ENST00000525964 SLC4A1APQ9BWU0 796 aaKnown RBP20.79■□□□□ 0.92
NCAPD3-203ENST00000525964 HRCP23327 699 aa20.79■□□□□ 0.92
NCAPD3-203ENST00000525964 CNGB1Q14028 1251 aaPredicted RBP20.76■□□□□ 0.91
NCAPD3-203ENST00000525964 FAM50AQ14320 339 aaKnown RBP20.7■□□□□ 0.9
NCAPD3-203ENST00000525964 TRIM52Q96A61 297 aa20.64■□□□□ 0.9
NCAPD3-203ENST00000525964 MYT1Q01538 1121 aa20.57■□□□□ 0.88
NCAPD3-203ENST00000525964 FBLN2P98095 1184 aa20.57■□□□□ 0.88
NCAPD3-203ENST00000525964 CLSPNQ9HAW4 1339 aa20.48■□□□□ 0.87
NCAPD3-203ENST00000525964 NEUROD1Q13562 356 aa20.42■□□□□ 0.86
NCAPD3-203ENST00000525964 DIEXFQ68CQ4 756 aaKnown RBP20.39■□□□□ 0.85
NCAPD3-203ENST00000525964 ZNF326Q5BKZ1 582 aaKnown RBP20.36■□□□□ 0.85
NCAPD3-203ENST00000525964 ZNF316A6NFI3 1004 aaPredicted RBP20.31■□□□□ 0.84
NCAPD3-203ENST00000525964 CDK11AQ9UQ88 783 aaPredicted RBP20.25■□□□□ 0.83
NCAPD3-203ENST00000525964 ANP32CO43423 234 aa20.24■□□□□ 0.83
NCAPD3-203ENST00000525964 ZBTB47Q9UFB7 747 aaPredicted RBP20.24■□□□□ 0.83
NCAPD3-203ENST00000525964 CSRNP3Q8WYN3 585 aa20.23■□□□□ 0.83
NCAPD3-203ENST00000525964 BCANQ96GW7 911 aa20.22■□□□□ 0.83
NCAPD3-203ENST00000525964 RTL5Q5HYW3 569 aaPredicted RBP20.21■□□□□ 0.83
NCAPD3-203ENST00000525964 P3H3Q8IVL6 736 aa20.2■□□□□ 0.82
NCAPD3-203ENST00000525964 NEFMP07197 916 aa20.19■□□□□ 0.82
NCAPD3-203ENST00000525964 ARID3CA6NKF2 412 aa20.16■□□□□ 0.82
NCAPD3-203ENST00000525964 ESF1Q9H501 851 aaKnown RBP20.13■□□□□ 0.81
NCAPD3-203ENST00000525964 ZNF777Q9ULD5 760 aaPredicted RBP20.13■□□□□ 0.81
NCAPD3-203ENST00000525964 SLC24A1O60721 1099 aa20.09■□□□□ 0.81
NCAPD3-203ENST00000525964 NPM1P06748 294 aaKnown RBP eCLIP20.05■□□□□ 0.8
NCAPD3-203ENST00000525964 CANXP27824 592 aaKnown RBP20.04■□□□□ 0.8
NCAPD3-203ENST00000525964 STAG3Q9UJ98 1225 aa19.95■□□□□ 0.78
NCAPD3-203ENST00000525964 SCRIBQ14160 1630 aa19.92■□□□□ 0.78
NCAPD3-203ENST00000525964 CHGAP10645 457 aaKnown RBP19.9■□□□□ 0.78
NCAPD3-203ENST00000525964 BCL11AQ9H165 835 aa19.85■□□□□ 0.77
NCAPD3-203ENST00000525964 TONSLQ96HA7 1378 aa19.82■□□□□ 0.76
NCAPD3-203ENST00000525964 GTF3C3Q9Y5Q9 886 aa19.76■□□□□ 0.75
NCAPD3-203ENST00000525964 TSPY4P0CV99 314 aa19.75■□□□□ 0.75
NCAPD3-203ENST00000525964 TSPY10P0CW01 314 aa19.75■□□□□ 0.75
NCAPD3-203ENST00000525964 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
NCAPD3-203ENST00000525964 CHMP7Q8WUX9 453 aaPredicted RBP19.7■□□□□ 0.74
NCAPD3-203ENST00000525964 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.67■□□□□ 0.743e-6■■■□□ 16.6
NCAPD3-203ENST00000525964 CHIC2Q9UKJ5 165 aa19.64■□□□□ 0.73
NCAPD3-203ENST00000525964 ZCCHC6Q5VYS8 1495 aaKnown RBP19.63■□□□□ 0.73
NCAPD3-203ENST00000525964 ANP32AP39687 249 aaKnown RBP19.62■□□□□ 0.73
NCAPD3-203ENST00000525964 MTUS2Q5JR59 1369 aa19.61■□□□□ 0.73
NCAPD3-203ENST00000525964 HNRNPUQ00839 825 aaKnown RBP eCLIP19.53■□□□□ 0.72
NCAPD3-203ENST00000525964 TMC1Q8TDI8 760 aa19.53■□□□□ 0.72
NCAPD3-203ENST00000525964 DDX10Q13206 875 aaKnown RBP19.52■□□□□ 0.71
NCAPD3-203ENST00000525964 UPF2Q9HAU5 1272 aaKnown RBP19.51■□□□□ 0.71
NCAPD3-203ENST00000525964 FAM9BQ8IZU0 186 aa19.51■□□□□ 0.71
NCAPD3-203ENST00000525964 HSP90AA1P07900 732 aaKnown RBP19.49■□□□□ 0.71
NCAPD3-203ENST00000525964 KDM2AQ9Y2K7 1162 aa19.48■□□□□ 0.71
NCAPD3-203ENST00000525964 ACIN1Q9UKV3 1341 aaKnown RBP19.48■□□□□ 0.71
NCAPD3-203ENST00000525964 WDR43Q15061 677 aaKnown RBP eCLIP19.48■□□□□ 0.71
NCAPD3-203ENST00000525964 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.48■□□□□ 0.71
NCAPD3-203ENST00000525964 PLEKHD1A6NEE1 506 aa19.47■□□□□ 0.71
NCAPD3-203ENST00000525964 NPM2Q86SE8 214 aaKnown RBP19.46■□□□□ 0.71
NCAPD3-203ENST00000525964 SALL2Q9Y467 1007 aaPredicted RBP19.43■□□□□ 0.7
NCAPD3-203ENST00000525964 KCNH8Q96L42 1107 aa19.42■□□□□ 0.7
NCAPD3-203ENST00000525964 PPP1R15AO75807 674 aaPredicted RBP19.41■□□□□ 0.7
NCAPD3-203ENST00000525964 CLIP1P30622 1438 aa19.41■□□□□ 0.7
NCAPD3-203ENST00000525964 SCAF1Q9H7N4 1312 aaKnown RBP19.41■□□□□ 0.7
NCAPD3-203ENST00000525964 FKBP8Q14318 412 aa19.4■□□□□ 0.7
NCAPD3-203ENST00000525964 ANP32BQ92688 251 aaKnown RBP19.4■□□□□ 0.7
NCAPD3-203ENST00000525964 RSF1Q96T23 1441 aaPredicted RBP19.39■□□□□ 0.69
NCAPD3-203ENST00000525964 RB1CC1Q8TDY2 1594 aa19.39■□□□□ 0.69
NCAPD3-203ENST00000525964 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
NCAPD3-203ENST00000525964 MRS2Q9HD23 443 aa19.36■□□□□ 0.69
NCAPD3-203ENST00000525964 EEA1Q15075 1411 aa19.34■□□□□ 0.69
NCAPD3-203ENST00000525964 CCDC180Q9P1Z9 1646 aa19.34■□□□□ 0.69
NCAPD3-203ENST00000525964 EIF4G2P78344 907 aaKnown RBP eCLIP19.33■□□□□ 0.69
NCAPD3-203ENST00000525964 RRP7BPQ9NSQ0 103 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms