Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CHKB-CPT1BH3BT56 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 AC046158.3-201ENST00000624947 2558 ntBASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 AC097358.2-201ENST00000607541 1159 ntBASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC11□□□□□ -0.65
CHKB-CPT1BH3BT56 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 MED25-210ENST00000612854 801 ntTSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 MED25-214ENST00000622402 642 ntTSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 AC124067.4-201ENST00000519691 2379 ntBASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CHKB-CPT1BH3BT56 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms