RNA–Protein interactions for RNA: ENST00000348639.7

CHRNA3-202, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 1 (best) BASIC

Gene CHRNA3, Length 2,030 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-202ENST00000348639 NISCHQ9Y2I1 1504 aa44.4■■■■■ 4.7
CHRNA3-202ENST00000348639 CCDC180Q9P1Z9 1646 aa38.29■■■■□ 3.72
CHRNA3-202ENST00000348639 ZCCHC6Q5VYS8 1495 aaKnown RBP37.43■■■■□ 3.58
CHRNA3-202ENST00000348639 SHROOM4Q9ULL8 1493 aa36.91■■■■□ 3.5
CHRNA3-202ENST00000348639 DCAF8L2P0C7V8 631 aa36.83■■■■□ 3.49
CHRNA3-202ENST00000348639 DCAF1Q9Y4B6 1507 aa36.66■■■■□ 3.46
CHRNA3-202ENST00000348639 ABCC9O60706 1549 aa35.99■■■■□ 3.35
CHRNA3-202ENST00000348639 MYO15BQ96JP2 1530 aa35.95■■■■□ 3.35
CHRNA3-202ENST00000348639 SUPT5HO00267 1087 aaKnown RBP35.8■■■■□ 3.32
CHRNA3-202ENST00000348639 NACADO15069 1562 aa35.54■■■■□ 3.28
CHRNA3-202ENST00000348639 SCRIBQ14160 1630 aa35.51■■■■□ 3.27
CHRNA3-202ENST00000348639 RB1CC1Q8TDY2 1594 aa35.14■■■■□ 3.22
CHRNA3-202ENST00000348639 RSF1Q96T23 1441 aaPredicted RBP34.76■■■■□ 3.15
CHRNA3-202ENST00000348639 CHIC1Q5VXU3 224 aa34.62■■■■□ 3.13
CHRNA3-202ENST00000348639 CECR2Q9BXF3 1484 aa34.52■■■■□ 3.12
CHRNA3-202ENST00000348639 UNC13AQ9UPW8 1703 aa34.51■■■■□ 3.12
CHRNA3-202ENST00000348639 MROH2BQ7Z745 1585 aa34.36■■■■□ 3.09
CHRNA3-202ENST00000348639 BAZ1AQ9NRL2 1556 aaPredicted RBP34.21■■■■□ 3.07
CHRNA3-202ENST00000348639 PABPN1Q86U42 306 aaKnown RBP eCLIP34.16■■■■□ 3.06
CHRNA3-202ENST00000348639 WIZO95785 1651 aa34.11■■■■□ 3.05
CHRNA3-202ENST00000348639 BICRAQ9NZM4 1560 aa34.11■■■■□ 3.05
CHRNA3-202ENST00000348639 SMARCA4P51532 1647 aa33.96■■■■□ 3.03
CHRNA3-202ENST00000348639 TOP2AP11388 1531 aaKnown RBP33.73■■■□□ 2.99
CHRNA3-202ENST00000348639 TRIM41Q8WV44 630 aa33.57■■■□□ 2.96
CHRNA3-202ENST00000348639 PEG3Q9GZU2 1588 aa33.5■■■□□ 2.95
CHRNA3-202ENST00000348639 SMARCA2P51531 1590 aa33.46■■■□□ 2.95
CHRNA3-202ENST00000348639 EIF4G1Q04637 1599 aaKnown RBP33.46■■■□□ 2.95
CHRNA3-202ENST00000348639 CCDC88BA6NC98 1476 aa33.46■■■□□ 2.95
CHRNA3-202ENST00000348639 LOC105371045A0A1W2PR82 267 aa33.37■■■□□ 2.93
CHRNA3-202ENST00000348639 ATAD2BQ9ULI0 1458 aa33.28■■■□□ 2.92
CHRNA3-202ENST00000348639 BAZ1BQ9UIG0 1483 aaKnown RBP33.16■■■□□ 2.9
CHRNA3-202ENST00000348639 FAM9AQ8IZU1 332 aaPredicted RBP33.06■■■□□ 2.88
CHRNA3-202ENST00000348639 ABCC8Q09428 1581 aa32.99■■■□□ 2.87
CHRNA3-202ENST00000348639 NCAPD3P42695 1498 aa32.84■■■□□ 2.85
CHRNA3-202ENST00000348639 HMGXB3Q12766 1538 aa32.82■■■□□ 2.84
CHRNA3-202ENST00000348639 EHMT2Q96KQ7 1210 aa32.73■■■□□ 2.83
CHRNA3-202ENST00000348639 WRNQ14191 1432 aaPredicted RBP eCLIP32.68■■■□□ 2.82
CHRNA3-202ENST00000348639 PCGF6Q9BYE7 350 aa32.58■■■□□ 2.81
CHRNA3-202ENST00000348639 EEA1Q15075 1411 aa32.55■■■□□ 2.8
CHRNA3-202ENST00000348639 SOGA1O94964 1423 aa32.54■■■□□ 2.8
CHRNA3-202ENST00000348639 SYNJ1O43426 1573 aa32.5■■■□□ 2.79
CHRNA3-202ENST00000348639 CC2D2AQ9P2K1 1620 aa32.47■■■□□ 2.79
CHRNA3-202ENST00000348639 RUSC2Q8N2Y8 1516 aa32.38■■■□□ 2.77
CHRNA3-202ENST00000348639 CSRNP3Q8WYN3 585 aa32.38■■■□□ 2.77
CHRNA3-202ENST00000348639 TRIM26Q12899 539 aaPredicted RBP32.37■■■□□ 2.77
CHRNA3-202ENST00000348639 CFTRP13569 1480 aa32.32■■■□□ 2.76
CHRNA3-202ENST00000348639 TOP2BQ02880 1626 aa32.3■■■□□ 2.76
CHRNA3-202ENST00000348639 BIVM-ERCC5R4GMW8 1640 aa32.22■■■□□ 2.75
CHRNA3-202ENST00000348639 TNIKQ9UKE5 1360 aa32.22■■■□□ 2.75
CHRNA3-202ENST00000348639 HRCP23327 699 aa32.21■■■□□ 2.75
CHRNA3-202ENST00000348639 GOLGA3Q08378 1498 aa32.15■■■□□ 2.74
CHRNA3-202ENST00000348639 DNAJC5BQ9UF47 199 aa32.14■■■□□ 2.74
CHRNA3-202ENST00000348639 CADPSQ9ULU8 1353 aa32.11■■■□□ 2.73
CHRNA3-202ENST00000348639 CEP162Q5TB80 1403 aa32.11■■■□□ 2.73
CHRNA3-202ENST00000348639 PRDM2Q13029 1718 aa32.1■■■□□ 2.73
CHRNA3-202ENST00000348639 CEP164Q9UPV0 1460 aa32.08■■■□□ 2.73
CHRNA3-202ENST00000348639 KIF21BO75037 1637 aa32.08■■■□□ 2.73
CHRNA3-202ENST00000348639 CUX1P39880 1505 aa32.07■■■□□ 2.72
CHRNA3-202ENST00000348639 UBTFP17480 764 aaKnown RBP32.05■■■□□ 2.72
CHRNA3-202ENST00000348639 RAPGEF2Q9Y4G8 1499 aa31.83■■■□□ 2.69
CHRNA3-202ENST00000348639 FANCD2Q9BXW9 1451 aa31.78■■■□□ 2.68
CHRNA3-202ENST00000348639 KIF27Q86VH2 1401 aa31.78■■■□□ 2.68
CHRNA3-202ENST00000348639 NESP48681 1621 aa31.77■■■□□ 2.68
CHRNA3-202ENST00000348639 PPARGC1BQ86YN6 1023 aaKnown RBP31.76■■■□□ 2.68
CHRNA3-202ENST00000348639 PRXQ9BXM0 1461 aa31.76■■■□□ 2.67
CHRNA3-202ENST00000348639 ERICH3Q5RHP9 1530 aa31.74■■■□□ 2.67
CHRNA3-202ENST00000348639 CLIP1P30622 1438 aa31.69■■■□□ 2.66
CHRNA3-202ENST00000348639 FGD5Q6ZNL6 1462 aa31.63■■■□□ 2.65
CHRNA3-202ENST00000348639 LAMC3Q9Y6N6 1575 aa31.61■■■□□ 2.65
CHRNA3-202ENST00000348639 CUX2O14529 1486 aa31.57■■■□□ 2.64
CHRNA3-202ENST00000348639 RANGAP1P46060 587 aaPredicted RBP31.53■■■□□ 2.64
CHRNA3-202ENST00000348639 DNMBPQ6XZF7 1577 aa31.52■■■□□ 2.64
CHRNA3-202ENST00000348639 VPS8Q8N3P4 1428 aa31.5■■■□□ 2.63
CHRNA3-202ENST00000348639 TOPBP1Q92547 1522 aa31.48■■■□□ 2.63
CHRNA3-202ENST00000348639 IGF1RP08069 1367 aa31.46■■■□□ 2.63
CHRNA3-202ENST00000348639 TTBK1Q5TCY1 1321 aaPredicted RBP31.44■■■□□ 2.62
CHRNA3-202ENST00000348639 PDS5BQ9NTI5 1447 aa31.42■■■□□ 2.62
CHRNA3-202ENST00000348639 ZEB1P37275 1124 aaPredicted RBP31.42■■■□□ 2.62
CHRNA3-202ENST00000348639 POLA1P09884 1462 aaPredicted RBP31.39■■■□□ 2.62
CHRNA3-202ENST00000348639 RAD54L2Q9Y4B4 1467 aa31.38■■■□□ 2.61
CHRNA3-202ENST00000348639 URB2Q14146 1524 aaKnown RBP31.35■■■□□ 2.61
CHRNA3-202ENST00000348639 ABCA10Q8WWZ4 1543 aa31.33■■■□□ 2.61
CHRNA3-202ENST00000348639 CARMIL1Q5VZK9 1371 aa31.31■■■□□ 2.6
CHRNA3-202ENST00000348639 KIF21AQ7Z4S6 1674 aa31.29■■■□□ 2.6
CHRNA3-202ENST00000348639 ARAP1Q96P48 1450 aa31.28■■■□□ 2.6
CHRNA3-202ENST00000348639 APLP2Q06481 763 aa31.24■■■□□ 2.59
CHRNA3-202ENST00000348639 ARHGAP35Q9NRY4 1499 aa31.15■■■□□ 2.58
CHRNA3-202ENST00000348639 WDR97A6NE52 1622 aa31.11■■■□□ 2.57
CHRNA3-202ENST00000348639 CUL7Q14999 1698 aa31.07■■■□□ 2.56
CHRNA3-202ENST00000348639 TDRD9Q8NDG6 1382 aaKnown RBP31.05■■■□□ 2.56
CHRNA3-202ENST00000348639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.03■■■□□ 2.56
CHRNA3-202ENST00000348639 ABCA5Q8WWZ7 1642 aa30.99■■■□□ 2.55
CHRNA3-202ENST00000348639 CCER1Q8TC90 406 aaPredicted RBP30.98■■■□□ 2.55
CHRNA3-202ENST00000348639 MRC2Q9UBG0 1479 aa30.97■■■□□ 2.55
CHRNA3-202ENST00000348639 GAPVD1Q14C86 1478 aa30.96■■■□□ 2.55
CHRNA3-202ENST00000348639 TARBP1Q13395 1621 aaKnown RBP30.92■■■□□ 2.54
CHRNA3-202ENST00000348639 KANK4Q5T7N3 995 aaPredicted RBP30.87■■■□□ 2.53
CHRNA3-202ENST00000348639 CTTNBP2Q8WZ74 1663 aa30.82■■■□□ 2.52
CHRNA3-202ENST00000348639 MAP3K1Q13233 1512 aa30.8■■■□□ 2.52
CHRNA3-202ENST00000348639 EFCAB5A4FU69 1503 aa30.79■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms