Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CHKB-CPT1BH3BT56 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHKB-CPT1BH3BT56 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHKB-CPT1BH3BT56 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHKB-CPT1BH3BT56 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHKB-CPT1BH3BT56 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHKB-CPT1BH3BT56 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHKB-CPT1BH3BT56 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHKB-CPT1BH3BT56 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CHKB-CPT1BH3BT56 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHKB-CPT1BH3BT56 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.97■□□□□ 0.63
CHKB-CPT1BH3BT56 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHKB-CPT1BH3BT56 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CHKB-CPT1BH3BT56 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.85■□□□□ 0.61
CHKB-CPT1BH3BT56 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CHKB-CPT1BH3BT56 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHKB-CPT1BH3BT56 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHKB-CPT1BH3BT56 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHKB-CPT1BH3BT56 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHKB-CPT1BH3BT56 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.52■□□□□ 0.55
CHKB-CPT1BH3BT56 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHKB-CPT1BH3BT56 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHKB-CPT1BH3BT56 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHKB-CPT1BH3BT56 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CHKB-CPT1BH3BT56 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CHKB-CPT1BH3BT56 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHKB-CPT1BH3BT56 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHKB-CPT1BH3BT56 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHKB-CPT1BH3BT56 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHKB-CPT1BH3BT56 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHKB-CPT1BH3BT56 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
CHKB-CPT1BH3BT56 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHKB-CPT1BH3BT56 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHKB-CPT1BH3BT56 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHKB-CPT1BH3BT56 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CHKB-CPT1BH3BT56 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHKB-CPT1BH3BT56 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHKB-CPT1BH3BT56 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHKB-CPT1BH3BT56 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHKB-CPT1BH3BT56 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHKB-CPT1BH3BT56 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHKB-CPT1BH3BT56 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHKB-CPT1BH3BT56 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHKB-CPT1BH3BT56 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC17.73■□□□□ 0.43
CHKB-CPT1BH3BT56 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHKB-CPT1BH3BT56 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHKB-CPT1BH3BT56 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHKB-CPT1BH3BT56 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHKB-CPT1BH3BT56 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHKB-CPT1BH3BT56 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHKB-CPT1BH3BT56 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHKB-CPT1BH3BT56 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHKB-CPT1BH3BT56 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHKB-CPT1BH3BT56 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHKB-CPT1BH3BT56 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CHKB-CPT1BH3BT56 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CHKB-CPT1BH3BT56 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHKB-CPT1BH3BT56 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CHKB-CPT1BH3BT56 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHKB-CPT1BH3BT56 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHKB-CPT1BH3BT56 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHKB-CPT1BH3BT56 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CHKB-CPT1BH3BT56 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CHKB-CPT1BH3BT56 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHKB-CPT1BH3BT56 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHKB-CPT1BH3BT56 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHKB-CPT1BH3BT56 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHKB-CPT1BH3BT56 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHKB-CPT1BH3BT56 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CHKB-CPT1BH3BT56 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHKB-CPT1BH3BT56 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHKB-CPT1BH3BT56 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHKB-CPT1BH3BT56 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHKB-CPT1BH3BT56 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHKB-CPT1BH3BT56 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHKB-CPT1BH3BT56 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHKB-CPT1BH3BT56 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHKB-CPT1BH3BT56 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.92■□□□□ 0.3
CHKB-CPT1BH3BT56 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHKB-CPT1BH3BT56 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHKB-CPT1BH3BT56 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHKB-CPT1BH3BT56 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CHKB-CPT1BH3BT56 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.86■□□□□ 0.29
CHKB-CPT1BH3BT56 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHKB-CPT1BH3BT56 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHKB-CPT1BH3BT56 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CHKB-CPT1BH3BT56 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms