Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.83■□□□□ 0.129e-7■■■□□ 17.7
SUB1P53999 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.099e-7■■■□□ 17.7
SUB1P53999 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.099e-7■■■□□ 17.7
SUB1P53999 ICE2-206ENST00000558654 561 ntTSL 415.17■□□□□ 0.029e-7■■■□□ 17.7
SUB1P53999 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.029e-7■■■□□ 17.7
SUB1P53999 CD151-216ENST00000530155 493 ntTSL 414.77□□□□□ -0.059e-7■■■□□ 17.7
SUB1P53999 CD151-206ENST00000525333 561 ntTSL 414.77□□□□□ -0.059e-7■■■□□ 17.7
SUB1P53999 UPF1-210ENST00000600689 3084 ntTSL 214.67□□□□□ -0.069e-7■■■□□ 17.7
SUB1P53999 CKB-209ENST00000554705 803 ntTSL 214.5□□□□□ -0.099e-7■■■□□ 17.7
SUB1P53999 ICE2-217ENST00000561446 564 ntTSL 414.45□□□□□ -0.19e-7■■■□□ 17.7
SUB1P53999 EPHB4-207ENST00000489808 921 ntTSL 1 (best)14.45□□□□□ -0.19e-7■■■□□ 17.7
SUB1P53999 ICE2-211ENST00000560895 571 ntTSL 414.45□□□□□ -0.19e-7■■■□□ 17.7
SUB1P53999 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.119e-7■■■□□ 17.7
SUB1P53999 ICE2-212ENST00000561087 545 ntTSL 414.22□□□□□ -0.139e-7■■■□□ 17.7
SUB1P53999 ICE2-209ENST00000560520 568 ntTSL 414.22□□□□□ -0.139e-7■■■□□ 17.7
SUB1P53999 PKD1-223ENST00000561668 665 ntTSL 314.18□□□□□ -0.149e-7■■■□□ 17.7
SUB1P53999 TYRO3-209ENST00000568490 2004 nt14.17□□□□□ -0.149e-7■■■□□ 17.7
SUB1P53999 CD151-204ENST00000524748 793 ntTSL 514.15□□□□□ -0.149e-7■■■□□ 17.7
SUB1P53999 PKD1-227ENST00000564313 568 ntTSL 414.04□□□□□ -0.169e-7■■■□□ 17.7
SUB1P53999 CKB-215ENST00000557287 565 ntTSL 214.03□□□□□ -0.169e-7■■■□□ 17.7
SUB1P53999 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.169e-7■■■□□ 17.7
SUB1P53999 CD151-212ENST00000527341 797 ntTSL 313.89□□□□□ -0.199e-7■■■□□ 17.7
SUB1P53999 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.84□□□□□ -0.199e-7■■■□□ 17.7
SUB1P53999 CKB-213ENST00000555659 755 ntTSL 213.83□□□□□ -0.29e-7■■■□□ 17.7
SUB1P53999 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.29e-7■■■□□ 17.7
SUB1P53999 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.219e-7■■■□□ 17.7
SUB1P53999 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC13.73□□□□□ -0.219e-7■■■□□ 17.7
SUB1P53999 CD151-214ENST00000528867 545 ntTSL 413.72□□□□□ -0.219e-7■■■□□ 17.7
SUB1P53999 CD151-211ENST00000526693 771 ntTSL 313.53□□□□□ -0.249e-7■■■□□ 17.7
SUB1P53999 CD151-207ENST00000525718 565 ntTSL 213.43□□□□□ -0.269e-7■■■□□ 17.7
SUB1P53999 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.279e-7■■■□□ 17.7
SUB1P53999 EPHB4-206ENST00000487222 5058 ntTSL 1 (best)13.27□□□□□ -0.299e-7■■■□□ 17.7
SUB1P53999 EPHB4-204ENST00000477446 1551 ntTSL 1 (best)13.26□□□□□ -0.299e-7■■■□□ 17.7
SUB1P53999 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.319e-7■■■□□ 17.7
SUB1P53999 CAPRIN1-210ENST00000531668 479 ntTSL 313.03□□□□□ -0.329e-7■■■□□ 17.7
SUB1P53999 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC12.97□□□□□ -0.339e-7■■■□□ 17.7
SUB1P53999 CD151-215ENST00000529810 608 ntTSL 312.92□□□□□ -0.349e-7■■■□□ 17.7
SUB1P53999 HLA-C-205ENST00000466892 754 nt12.76□□□□□ -0.379e-7■■■□□ 17.7
SUB1P53999 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.76□□□□□ -0.379e-7■■■□□ 17.7
SUB1P53999 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.379e-7■■■□□ 17.7
SUB1P53999 PGGHG-206ENST00000476372 2879 ntTSL 212.73□□□□□ -0.379e-7■■■□□ 17.7
SUB1P53999 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.69□□□□□ -0.389e-7■■■□□ 17.7
SUB1P53999 PKD1-226ENST00000562425 608 ntTSL 312.57□□□□□ -0.49e-7■■■□□ 17.7
SUB1P53999 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.439e-7■■■□□ 17.7
SUB1P53999 PGGHG-205ENST00000474221 4418 ntTSL 212.37□□□□□ -0.439e-7■■■□□ 17.7
SUB1P53999 UPF1-204ENST00000596842 3825 ntTSL 212.31□□□□□ -0.449e-7■■■□□ 17.7
SUB1P53999 RNF7-203ENST00000477012 1036 ntTSL 1 (best)12.27□□□□□ -0.459e-7■■■□□ 17.7
SUB1P53999 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.19□□□□□ -0.469e-7■■■□□ 17.7
SUB1P53999 MAP3K4-215ENST00000544041 5444 ntTSL 1 (best)12.16□□□□□ -0.469e-7■■■□□ 17.7
SUB1P53999 LDLR-201ENST00000252444 5337 ntAPPRIS ALT2 TSL 1 (best)12.13□□□□□ -0.479e-7■■■□□ 17.7
SUB1P53999 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.479e-7■■■□□ 17.7
SUB1P53999 MAP3K4-207ENST00000490904 5451 ntTSL 1 (best)12.08□□□□□ -0.489e-7■■■□□ 17.7
SUB1P53999 CD151-219ENST00000531999 580 ntTSL 312.06□□□□□ -0.489e-7■■■□□ 17.7
SUB1P53999 CD151-208ENST00000525868 541 ntTSL 411.97□□□□□ -0.499e-7■■■□□ 17.7
SUB1P53999 ICE2-208ENST00000560406 584 ntTSL 411.97□□□□□ -0.499e-7■■■□□ 17.7
SUB1P53999 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.59e-7■■■□□ 17.7
SUB1P53999 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC11.79□□□□□ -0.529e-7■■■□□ 17.7
SUB1P53999 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC11.37□□□□□ -0.599e-7■■■□□ 17.7
SUB1P53999 EPHB4-209ENST00000492878 769 ntTSL 511.12□□□□□ -0.639e-7■■■□□ 17.7
SUB1P53999 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC11.07□□□□□ -0.649e-7■■■□□ 17.7
SUB1P53999 NOP16-206ENST00000510608 1161 ntTSL 211.03□□□□□ -0.649e-7■■■□□ 17.7
SUB1P53999 SMPD4-219ENST00000491128 2570 ntTSL 1 (best)10.99□□□□□ -0.659e-7■■■□□ 17.7
SUB1P53999 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC10.88□□□□□ -0.679e-7■■■□□ 17.7
SUB1P53999 RNF7-204ENST00000477393 862 ntTSL 210.85□□□□□ -0.679e-7■■■□□ 17.7
SUB1P53999 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC10.8□□□□□ -0.689e-7■■■□□ 17.7
SUB1P53999 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC10.69□□□□□ -0.79e-7■■■□□ 17.7
SUB1P53999 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC10.63□□□□□ -0.719e-7■■■□□ 17.7
SUB1P53999 CD151-217ENST00000530320 648 ntTSL 310.56□□□□□ -0.729e-7■■■□□ 17.7
SUB1P53999 PGGHG-203ENST00000409548 3687 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.739e-7■■■□□ 17.7
SUB1P53999 CKB-216ENST00000557530 523 ntTSL 410.37□□□□□ -0.759e-7■■■□□ 17.7
SUB1P53999 ABCF2-201ENST00000222388 2185 ntTSL 5 BASIC10.32□□□□□ -0.765e-7■■■□□ 17.7
SUB1P53999 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.769e-7■■■□□ 17.7
SUB1P53999 TYRO3-202ENST00000559066 3876 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.789e-7■■■□□ 17.7
SUB1P53999 AC009163.4-203ENST00000566594 254 ntTSL 210.1□□□□□ -0.799e-7■■■□□ 17.7
SUB1P53999 AC009163.4-202ENST00000561887 137 ntTSL 210.1□□□□□ -0.799e-7■■■□□ 17.7
SUB1P53999 SMARCD2-204ENST00000450364 993 ntTSL 510.09□□□□□ -0.799e-7■■■□□ 17.7
SUB1P53999 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC10.09□□□□□ -0.799e-7■■■□□ 17.7
SUB1P53999 CD151-218ENST00000530726 1407 ntTSL 510.03□□□□□ -0.89e-7■■■□□ 17.7
SUB1P53999 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC9.97□□□□□ -0.819e-7■■■□□ 17.7
SUB1P53999 CFDP1-207ENST00000566901 1167 ntTSL 1 (best)9.92□□□□□ -0.829e-7■■■□□ 17.7
SUB1P53999 CFDP1-205ENST00000565646 608 ntTSL 39.87□□□□□ -0.839e-7■■■□□ 17.7
SUB1P53999 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.839e-7■■■□□ 17.7
SUB1P53999 PGGHG-202ENST00000409479 3062 ntTSL 5 BASIC9.85□□□□□ -0.839e-7■■■□□ 17.7
SUB1P53999 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.849e-7■■■□□ 17.7
SUB1P53999 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.849e-7■■■□□ 17.7
SUB1P53999 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC9.78□□□□□ -0.849e-7■■■□□ 17.7
SUB1P53999 SMPD4-213ENST00000454468 3586 ntTSL 1 (best)9.77□□□□□ -0.859e-7■■■□□ 17.7
SUB1P53999 RNF7-205ENST00000480908 782 ntTSL 4 BASIC9.64□□□□□ -0.879e-7■■■□□ 17.7
SUB1P53999 AC046185.1-201ENST00000580553 2128 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.879e-7■■■□□ 17.7
SUB1P53999 SMPD4-218ENST00000482171 4298 ntTSL 29.6□□□□□ -0.879e-7■■■□□ 17.7
SUB1P53999 RNF7-202ENST00000393000 805 ntTSL 2 BASIC9.52□□□□□ -0.899e-7■■■□□ 17.7
SUB1P53999 PWP1-201ENST00000412830 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.899e-7■■■□□ 17.7
SUB1P53999 SMPD4-209ENST00000439886 3371 ntTSL 29.44□□□□□ -0.99e-7■■■□□ 17.7
SUB1P53999 PDIA6-206ENST00000489662 564 ntTSL 49.32□□□□□ -0.929e-7■■■□□ 17.7
SUB1P53999 MAP3K4-208ENST00000536852 2526 ntTSL 29.3□□□□□ -0.929e-7■■■□□ 17.7
SUB1P53999 NOP16-202ENST00000502663 551 ntTSL 39.18□□□□□ -0.949e-7■■■□□ 17.7
SUB1P53999 LDLR-208ENST00000558518 3617 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.959e-7■■■□□ 17.7
SUB1P53999 RNF7-207ENST00000498828 652 ntTSL 29.11□□□□□ -0.959e-7■■■□□ 17.7
SUB1P53999 SMPD4-205ENST00000431183 3614 ntTSL 2 BASIC8.99□□□□□ -0.979e-7■■■□□ 17.7
SUB1P53999 HLA-C-206ENST00000470363 1279 nt8.87□□□□□ -0.999e-7■■■□□ 17.7
Retrieved 100 of 11,644 protein–RNA pairs in 273 ms