RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NISCHQ9Y2I1 1504 aa37.33■■■■□ 3.57
UPF1-210ENST00000600689 CCDC180Q9P1Z9 1646 aa31.85■■■□□ 2.69
UPF1-210ENST00000600689 SHROOM4Q9ULL8 1493 aa31.69■■■□□ 2.66
UPF1-210ENST00000600689 ZCCHC6Q5VYS8 1495 aaKnown RBP31.49■■■□□ 2.63
UPF1-210ENST00000600689 SUPT5HO00267 1087 aaKnown RBP31.43■■■□□ 2.62
UPF1-210ENST00000600689 DCAF8L2P0C7V8 631 aa31.22■■■□□ 2.59
UPF1-210ENST00000600689 HRCP23327 699 aa30.67■■■□□ 2.5
UPF1-210ENST00000600689 PCGF6Q9BYE7 350 aa30.63■■■□□ 2.49
UPF1-210ENST00000600689 DCAF1Q9Y4B6 1507 aa30.55■■■□□ 2.48
UPF1-210ENST00000600689 PPARGC1BQ86YN6 1023 aaKnown RBP30.51■■■□□ 2.47
UPF1-210ENST00000600689 MYO15BQ96JP2 1530 aa30.43■■■□□ 2.46
UPF1-210ENST00000600689 CHIC1Q5VXU3 224 aa30.39■■■□□ 2.46
UPF1-210ENST00000600689 ABCC9O60706 1549 aa29.99■■■□□ 2.39
UPF1-210ENST00000600689 LOC105371045A0A1W2PR82 267 aa29.97■■■□□ 2.39
UPF1-210ENST00000600689 SCRIBQ14160 1630 aa29.92■■■□□ 2.38
UPF1-210ENST00000600689 NACADO15069 1562 aa29.55■■■□□ 2.32
UPF1-210ENST00000600689 RSF1Q96T23 1441 aaPredicted RBP29.42■■■□□ 2.3
UPF1-210ENST00000600689 EHMT2Q96KQ7 1210 aa29.39■■■□□ 2.3
UPF1-210ENST00000600689 TRIM26Q12899 539 aaPredicted RBP29.39■■■□□ 2.29
UPF1-210ENST00000600689 CECR2Q9BXF3 1484 aa29.23■■■□□ 2.27
UPF1-210ENST00000600689 FAM9AQ8IZU1 332 aaPredicted RBP29.22■■■□□ 2.27
UPF1-210ENST00000600689 RB1CC1Q8TDY2 1594 aa29.18■■■□□ 2.26
UPF1-210ENST00000600689 MROH2BQ7Z745 1585 aa29.05■■■□□ 2.24
UPF1-210ENST00000600689 SCAF1Q9H7N4 1312 aaKnown RBP28.94■■■□□ 2.22
UPF1-210ENST00000600689 WIZO95785 1651 aa28.89■■■□□ 2.22
UPF1-210ENST00000600689 TRIM41Q8WV44 630 aa28.88■■■□□ 2.21
UPF1-210ENST00000600689 ZEB1P37275 1124 aaPredicted RBP28.84■■■□□ 2.21
UPF1-210ENST00000600689 UNC13AQ9UPW8 1703 aa28.81■■■□□ 2.2
UPF1-210ENST00000600689 PELP1Q8IZL8 1130 aaKnown RBP28.7■■■□□ 2.18
UPF1-210ENST00000600689 BAZ1AQ9NRL2 1556 aaPredicted RBP28.68■■■□□ 2.18
UPF1-210ENST00000600689 PABPN1Q86U42 306 aaKnown RBP eCLIP28.65■■■□□ 2.18
UPF1-210ENST00000600689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
UPF1-210ENST00000600689 TTBK1Q5TCY1 1321 aaPredicted RBP28.54■■■□□ 2.16
UPF1-210ENST00000600689 SMARCA4P51532 1647 aa28.52■■■□□ 2.16
UPF1-210ENST00000600689 BICRAQ9NZM4 1560 aa28.45■■■□□ 2.15
UPF1-210ENST00000600689 CCER1Q8TC90 406 aaPredicted RBP28.41■■■□□ 2.14
UPF1-210ENST00000600689 NEUROD1Q13562 356 aa28.36■■■□□ 2.13
UPF1-210ENST00000600689 TOP2AP11388 1531 aaKnown RBP28.35■■■□□ 2.13
UPF1-210ENST00000600689 CCDC88BA6NC98 1476 aa28.28■■■□□ 2.12
UPF1-210ENST00000600689 ACIN1Q9UKV3 1341 aaKnown RBP28.26■■■□□ 2.12
UPF1-210ENST00000600689 EIF4G1Q04637 1599 aaKnown RBP28.26■■■□□ 2.11
UPF1-210ENST00000600689 SMARCA2P51531 1590 aa28.22■■■□□ 2.11
UPF1-210ENST00000600689 GTF3C3Q9Y5Q9 886 aa28.21■■■□□ 2.11
UPF1-210ENST00000600689 ABCC8Q09428 1581 aa28.13■■■□□ 2.09
UPF1-210ENST00000600689 DIEXFQ68CQ4 756 aaKnown RBP28.12■■■□□ 2.09
UPF1-210ENST00000600689 YTHDC1Q96MU7 727 aaKnown RBP28.02■■■□□ 2.08
UPF1-210ENST00000600689 CENPBP07199 599 aaPredicted RBP27.98■■■□□ 2.07
UPF1-210ENST00000600689 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
UPF1-210ENST00000600689 ATAD2BQ9ULI0 1458 aa27.89■■■□□ 2.05
UPF1-210ENST00000600689 BAZ1BQ9UIG0 1483 aaKnown RBP27.79■■■□□ 2.04
UPF1-210ENST00000600689 SOGA1O94964 1423 aa27.78■■■□□ 2.04
UPF1-210ENST00000600689 RUSC2Q8N2Y8 1516 aa27.69■■■□□ 2.02
UPF1-210ENST00000600689 WRNQ14191 1432 aaPredicted RBP eCLIP27.64■■■□□ 2.02
UPF1-210ENST00000600689 UBTFP17480 764 aaKnown RBP27.58■■■□□ 2.01
UPF1-210ENST00000600689 ZNF316A6NFI3 1004 aaPredicted RBP27.56■■■□□ 2
UPF1-210ENST00000600689 HNRNPUL2Q1KMD3 747 aaKnown RBP27.55■■■□□ 2
UPF1-210ENST00000600689 SYNJ1O43426 1573 aa27.55■■■□□ 2
UPF1-210ENST00000600689 CSRNP3Q8WYN3 585 aa27.54■■■□□ 2
UPF1-210ENST00000600689 MIER1Q8N108 512 aa27.5■■□□□ 1.99
UPF1-210ENST00000600689 RANGAP1P46060 587 aaPredicted RBP27.42■■□□□ 1.98
UPF1-210ENST00000600689 CEP162Q5TB80 1403 aa27.42■■□□□ 1.98
UPF1-210ENST00000600689 EEA1Q15075 1411 aa27.42■■□□□ 1.98
UPF1-210ENST00000600689 NCAPD3P42695 1498 aa27.38■■□□□ 1.97
UPF1-210ENST00000600689 TNIKQ9UKE5 1360 aa27.36■■□□□ 1.97
UPF1-210ENST00000600689 HMGXB3Q12766 1538 aa27.32■■□□□ 1.96
UPF1-210ENST00000600689 MYT1Q01538 1121 aa27.31■■□□□ 1.96
UPF1-210ENST00000600689 GOLGA3Q08378 1498 aa27.28■■□□□ 1.96
UPF1-210ENST00000600689 TOP2BQ02880 1626 aa27.19■■□□□ 1.94
UPF1-210ENST00000600689 CEP164Q9UPV0 1460 aa27.16■■□□□ 1.94
UPF1-210ENST00000600689 KIF21BO75037 1637 aa27.11■■□□□ 1.93
UPF1-210ENST00000600689 RAPGEF2Q9Y4G8 1499 aa27.1■■□□□ 1.93
UPF1-210ENST00000600689 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
UPF1-210ENST00000600689 CFTRP13569 1480 aa27.07■■□□□ 1.92
UPF1-210ENST00000600689 CUX1P39880 1505 aa27.06■■□□□ 1.92
UPF1-210ENST00000600689 APLP2Q06481 763 aa27.02■■□□□ 1.92
UPF1-210ENST00000600689 CLIP1P30622 1438 aa26.99■■□□□ 1.91
UPF1-210ENST00000600689 CC2D2AQ9P2K1 1620 aa26.96■■□□□ 1.91
UPF1-210ENST00000600689 CADPSQ9ULU8 1353 aa26.86■■□□□ 1.89
UPF1-210ENST00000600689 PRXQ9BXM0 1461 aa26.82■■□□□ 1.88
UPF1-210ENST00000600689 SUPT16HQ9Y5B9 1047 aaKnown RBP26.8■■□□□ 1.88
UPF1-210ENST00000600689 KIF27Q86VH2 1401 aa26.8■■□□□ 1.88
UPF1-210ENST00000600689 VPS8Q8N3P4 1428 aa26.79■■□□□ 1.88
UPF1-210ENST00000600689 PRDM2Q13029 1718 aa26.79■■□□□ 1.88
UPF1-210ENST00000600689 BCANQ96GW7 911 aa26.74■■□□□ 1.87
UPF1-210ENST00000600689 ITGAEP38570 1179 aa26.73■■□□□ 1.87
UPF1-210ENST00000600689 ERICH3Q5RHP9 1530 aa26.73■■□□□ 1.87
UPF1-210ENST00000600689 CUX2O14529 1486 aa26.67■■□□□ 1.86
UPF1-210ENST00000600689 KCNH8Q96L42 1107 aa26.64■■□□□ 1.86
UPF1-210ENST00000600689 FGD5Q6ZNL6 1462 aa26.64■■□□□ 1.85
UPF1-210ENST00000600689 NESP48681 1621 aa26.63■■□□□ 1.85
UPF1-210ENST00000600689 FANCD2Q9BXW9 1451 aa26.61■■□□□ 1.85
UPF1-210ENST00000600689 ARAP1Q96P48 1450 aa26.61■■□□□ 1.85
UPF1-210ENST00000600689 IGF1RP08069 1367 aa26.58■■□□□ 1.85
UPF1-210ENST00000600689 TSHZ2Q9NRE2 1034 aa26.57■■□□□ 1.84
UPF1-210ENST00000600689 DNAJC5BQ9UF47 199 aa26.55■■□□□ 1.84
UPF1-210ENST00000600689 KANK4Q5T7N3 995 aaPredicted RBP26.52■■□□□ 1.84
UPF1-210ENST00000600689 DHX57Q6P158 1386 aaKnown RBP26.49■■□□□ 1.83
UPF1-210ENST00000600689 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
UPF1-210ENST00000600689 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
UPF1-210ENST00000600689 ARHGAP35Q9NRY4 1499 aa26.45■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms