RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
UPF1-204ENST00000596842 SHROOM4Q9ULL8 1493 aa26.79■■□□□ 1.88
UPF1-204ENST00000596842 SUPT5HO00267 1087 aaKnown RBP26.49■■□□□ 1.83
UPF1-204ENST00000596842 DCAF8L2P0C7V8 631 aa26.11■■□□□ 1.77
UPF1-204ENST00000596842 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
UPF1-204ENST00000596842 PCGF6Q9BYE7 350 aa25.34■■□□□ 1.65
UPF1-204ENST00000596842 ZCCHC6Q5VYS8 1495 aaKnown RBP25.25■■□□□ 1.63
UPF1-204ENST00000596842 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
UPF1-204ENST00000596842 HRCP23327 699 aa25.12■■□□□ 1.61
UPF1-204ENST00000596842 LOC105371045A0A1W2PR82 267 aa25.03■■□□□ 1.6
UPF1-204ENST00000596842 PPARGC1BQ86YN6 1023 aaKnown RBP25.01■■□□□ 1.59
UPF1-204ENST00000596842 CCDC180Q9P1Z9 1646 aa24.82■■□□□ 1.56
UPF1-204ENST00000596842 EHMT2Q96KQ7 1210 aa24.8■■□□□ 1.56
UPF1-204ENST00000596842 FAM9AQ8IZU1 332 aaPredicted RBP24.64■■□□□ 1.53
UPF1-204ENST00000596842 TRIM26Q12899 539 aaPredicted RBP24.37■■□□□ 1.49
UPF1-204ENST00000596842 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
UPF1-204ENST00000596842 DCAF1Q9Y4B6 1507 aa24.26■■□□□ 1.47
UPF1-204ENST00000596842 PELP1Q8IZL8 1130 aaKnown RBP24.16■■□□□ 1.46
UPF1-204ENST00000596842 SCRIBQ14160 1630 aa24.07■■□□□ 1.44
UPF1-204ENST00000596842 TTBK1Q5TCY1 1321 aaPredicted RBP24■■□□□ 1.43
UPF1-204ENST00000596842 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
UPF1-204ENST00000596842 ZEB1P37275 1124 aaPredicted RBP23.84■■□□□ 1.41
UPF1-204ENST00000596842 ABCC9O60706 1549 aa23.84■■□□□ 1.41
UPF1-204ENST00000596842 RB1CC1Q8TDY2 1594 aa23.79■■□□□ 1.4
UPF1-204ENST00000596842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.74■■□□□ 1.39
UPF1-204ENST00000596842 CCER1Q8TC90 406 aaPredicted RBP23.67■■□□□ 1.38
UPF1-204ENST00000596842 CECR2Q9BXF3 1484 aa23.65■■□□□ 1.38
UPF1-204ENST00000596842 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
UPF1-204ENST00000596842 MROH2BQ7Z745 1585 aa23.45■■□□□ 1.35
UPF1-204ENST00000596842 MYT1Q01538 1121 aa23.39■■□□□ 1.33
UPF1-204ENST00000596842 UBTFP17480 764 aaKnown RBP23.35■■□□□ 1.33
UPF1-204ENST00000596842 WIZO95785 1651 aa23.33■■□□□ 1.33
UPF1-204ENST00000596842 RANGAP1P46060 587 aaPredicted RBP23.29■■□□□ 1.32
UPF1-204ENST00000596842 DIEXFQ68CQ4 756 aaKnown RBP23.22■■□□□ 1.31
UPF1-204ENST00000596842 NEUROD1Q13562 356 aa23.18■■□□□ 1.3
UPF1-204ENST00000596842 YTHDC1Q96MU7 727 aaKnown RBP23.15■■□□□ 1.3
UPF1-204ENST00000596842 ABCC8Q09428 1581 aa23.14■■□□□ 1.29
UPF1-204ENST00000596842 PABPN1Q86U42 306 aaKnown RBP eCLIP23.13■■□□□ 1.29
UPF1-204ENST00000596842 NACADO15069 1562 aa23.13■■□□□ 1.29
UPF1-204ENST00000596842 HNRNPUL2Q1KMD3 747 aaKnown RBP23.11■■□□□ 1.29
UPF1-204ENST00000596842 ACIN1Q9UKV3 1341 aaKnown RBP23.09■■□□□ 1.29
UPF1-204ENST00000596842 CCDC88BA6NC98 1476 aa23.08■■□□□ 1.28
UPF1-204ENST00000596842 GTF3C3Q9Y5Q9 886 aa23.07■■□□□ 1.28
UPF1-204ENST00000596842 SOGA1O94964 1423 aa23.04■■□□□ 1.28
UPF1-204ENST00000596842 CENPBP07199 599 aaPredicted RBP23.02■■□□□ 1.28
UPF1-204ENST00000596842 CSRNP3Q8WYN3 585 aa23.01■■□□□ 1.27
UPF1-204ENST00000596842 CEP162Q5TB80 1403 aa23■■□□□ 1.27
UPF1-204ENST00000596842 BAZ1AQ9NRL2 1556 aaPredicted RBP22.92■■□□□ 1.26
UPF1-204ENST00000596842 RUSC2Q8N2Y8 1516 aa22.91■■□□□ 1.26
UPF1-204ENST00000596842 APLP2Q06481 763 aa22.87■■□□□ 1.25
UPF1-204ENST00000596842 ZNF316A6NFI3 1004 aaPredicted RBP22.82■■□□□ 1.24
UPF1-204ENST00000596842 TNIKQ9UKE5 1360 aa22.77■■□□□ 1.24
UPF1-204ENST00000596842 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
UPF1-204ENST00000596842 MIER1Q8N108 512 aa22.69■■□□□ 1.22
UPF1-204ENST00000596842 SMARCA2P51531 1590 aa22.68■■□□□ 1.22
UPF1-204ENST00000596842 SMARCA4P51532 1647 aa22.67■■□□□ 1.22
UPF1-204ENST00000596842 WRNQ14191 1432 aaPredicted RBP eCLIP22.66■■□□□ 1.22
UPF1-204ENST00000596842 EIF4G1Q04637 1599 aaKnown RBP22.65■■□□□ 1.22
UPF1-204ENST00000596842 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
UPF1-204ENST00000596842 ITGAEP38570 1179 aa22.57■■□□□ 1.2
UPF1-204ENST00000596842 CLIP1P30622 1438 aa22.56■■□□□ 1.2
UPF1-204ENST00000596842 EEA1Q15075 1411 aa22.52■■□□□ 1.2
UPF1-204ENST00000596842 CEP164Q9UPV0 1460 aa22.41■■□□□ 1.18
UPF1-204ENST00000596842 RAPGEF2Q9Y4G8 1499 aa22.37■■□□□ 1.17
UPF1-204ENST00000596842 SYNJ1O43426 1573 aa22.33■■□□□ 1.17
UPF1-204ENST00000596842 UNC13AQ9UPW8 1703 aa22.33■■□□□ 1.16
UPF1-204ENST00000596842 VPS8Q8N3P4 1428 aa22.32■■□□□ 1.16
UPF1-204ENST00000596842 KANK4Q5T7N3 995 aaPredicted RBP22.3■■□□□ 1.16
UPF1-204ENST00000596842 ATP1B4Q9UN42 357 aaPredicted RBP22.28■■□□□ 1.16
UPF1-204ENST00000596842 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
UPF1-204ENST00000596842 ATAD2BQ9ULI0 1458 aa22.17■■□□□ 1.14
UPF1-204ENST00000596842 BICRAQ9NZM4 1560 aa22.14■■□□□ 1.13
UPF1-204ENST00000596842 BCL11AQ9H165 835 aa22.12■■□□□ 1.13
UPF1-204ENST00000596842 KIF21BO75037 1637 aa22.12■■□□□ 1.13
UPF1-204ENST00000596842 P3H3Q8IVL6 736 aa22.1■■□□□ 1.13
UPF1-204ENST00000596842 DHX57Q6P158 1386 aaKnown RBP22.08■■□□□ 1.12
UPF1-204ENST00000596842 FAM50AQ14320 339 aaKnown RBP22.06■■□□□ 1.12
UPF1-204ENST00000596842 BCANQ96GW7 911 aa22.05■■□□□ 1.12
UPF1-204ENST00000596842 KCNH8Q96L42 1107 aa22.02■■□□□ 1.12
UPF1-204ENST00000596842 HIRIP3Q9BW71 556 aaPredicted RBP22.02■■□□□ 1.12
UPF1-204ENST00000596842 SUPT16HQ9Y5B9 1047 aaKnown RBP21.96■■□□□ 1.11
UPF1-204ENST00000596842 DDX10Q13206 875 aaKnown RBP21.94■■□□□ 1.1
UPF1-204ENST00000596842 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
UPF1-204ENST00000596842 SIN3AQ96ST3 1273 aa21.93■■□□□ 1.1
UPF1-204ENST00000596842 CCNB3Q8WWL7 1395 aa21.9■■□□□ 1.1
UPF1-204ENST00000596842 KIF27Q86VH2 1401 aa21.89■■□□□ 1.09
UPF1-204ENST00000596842 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
UPF1-204ENST00000596842 CLSPNQ9HAW4 1339 aa21.86■■□□□ 1.09
UPF1-204ENST00000596842 TOP2BQ02880 1626 aa21.84■■□□□ 1.09
UPF1-204ENST00000596842 PRXQ9BXM0 1461 aa21.82■■□□□ 1.08
UPF1-204ENST00000596842 RAB3GAP2Q9H2M9 1393 aa21.81■■□□□ 1.08
UPF1-204ENST00000596842 TRIM52Q96A61 297 aa21.77■■□□□ 1.08
UPF1-204ENST00000596842 FKBP8Q14318 412 aa21.75■■□□□ 1.07
UPF1-204ENST00000596842 CUX1P39880 1505 aa21.75■■□□□ 1.07
UPF1-204ENST00000596842 CUX2O14529 1486 aa21.74■■□□□ 1.07
UPF1-204ENST00000596842 ARHGAP35Q9NRY4 1499 aa21.73■■□□□ 1.07
UPF1-204ENST00000596842 RRBP1Q9P2E9 1410 aaKnown RBP21.7■■□□□ 1.06
UPF1-204ENST00000596842 ERICH3Q5RHP9 1530 aa21.68■■□□□ 1.06
UPF1-204ENST00000596842 TSHZ2Q9NRE2 1034 aa21.65■■□□□ 1.06
UPF1-204ENST00000596842 CARMIL1Q5VZK9 1371 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 184.2 ms