RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 NISCHQ9Y2I1 1504 aa21.21■□□□□ 0.99
SMPD4-209ENST00000439886 SUPT5HO00267 1087 aaKnown RBP19.77■□□□□ 0.76
SMPD4-209ENST00000439886 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
SMPD4-209ENST00000439886 PELP1Q8IZL8 1130 aaKnown RBP19.73■□□□□ 0.75
SMPD4-209ENST00000439886 PCGF6Q9BYE7 350 aa19.49■□□□□ 0.71
SMPD4-209ENST00000439886 HRCP23327 699 aa19.45■□□□□ 0.7
SMPD4-209ENST00000439886 PPARGC1BQ86YN6 1023 aaKnown RBP19.41■□□□□ 0.7
SMPD4-209ENST00000439886 MYT1Q01538 1121 aa19.29■□□□□ 0.68
SMPD4-209ENST00000439886 DCAF8L2P0C7V8 631 aa19.04■□□□□ 0.64
SMPD4-209ENST00000439886 CHIC1Q5VXU3 224 aa18.92■□□□□ 0.62
SMPD4-209ENST00000439886 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
SMPD4-209ENST00000439886 MYO15BQ96JP2 1530 aa18.8■□□□□ 0.6
SMPD4-209ENST00000439886 EHMT2Q96KQ7 1210 aa18.68■□□□□ 0.58
SMPD4-209ENST00000439886 TRIM26Q12899 539 aaPredicted RBP18.53■□□□□ 0.56
SMPD4-209ENST00000439886 SCAF1Q9H7N4 1312 aaKnown RBP18.47■□□□□ 0.55
SMPD4-209ENST00000439886 FAM9AQ8IZU1 332 aaPredicted RBP18.44■□□□□ 0.54
SMPD4-209ENST00000439886 ZEB1P37275 1124 aaPredicted RBP18.33■□□□□ 0.52
SMPD4-209ENST00000439886 TTBK1Q5TCY1 1321 aaPredicted RBP18.31■□□□□ 0.52
SMPD4-209ENST00000439886 DCAF1Q9Y4B6 1507 aa18.19■□□□□ 0.5
SMPD4-209ENST00000439886 PRKCSHP14314 528 aaPredicted RBP18.16■□□□□ 0.5
SMPD4-209ENST00000439886 GTF3C3Q9Y5Q9 886 aa18.09■□□□□ 0.49
SMPD4-209ENST00000439886 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.49
SMPD4-209ENST00000439886 TRIM41Q8WV44 630 aa18.08■□□□□ 0.48
SMPD4-209ENST00000439886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.07■□□□□ 0.48
SMPD4-209ENST00000439886 NEUROD1Q13562 356 aa18.07■□□□□ 0.48
SMPD4-209ENST00000439886 ACIN1Q9UKV3 1341 aaKnown RBP18.03■□□□□ 0.48
SMPD4-209ENST00000439886 YTHDC1Q96MU7 727 aaKnown RBP18.03■□□□□ 0.48
SMPD4-209ENST00000439886 BCL11AQ9H165 835 aa18.03■□□□□ 0.48
SMPD4-209ENST00000439886 CENPBP07199 599 aaPredicted RBP18.01■□□□□ 0.47
SMPD4-209ENST00000439886 ZCCHC6Q5VYS8 1495 aaKnown RBP17.92■□□□□ 0.46
SMPD4-209ENST00000439886 DIEXFQ68CQ4 756 aaKnown RBP17.9■□□□□ 0.46
SMPD4-209ENST00000439886 CCDC180Q9P1Z9 1646 aa17.88■□□□□ 0.45
SMPD4-209ENST00000439886 ERICH6Q7L0X2 663 aa17.76■□□□□ 0.43
SMPD4-209ENST00000439886 ZNF316A6NFI3 1004 aaPredicted RBP17.45■□□□□ 0.38
SMPD4-209ENST00000439886 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
SMPD4-209ENST00000439886 MIER1Q8N108 512 aa17.42■□□□□ 0.38
SMPD4-209ENST00000439886 APLP2Q06481 763 aa17.38■□□□□ 0.37
SMPD4-209ENST00000439886 RANGAP1P46060 587 aaPredicted RBP17.35■□□□□ 0.37
SMPD4-209ENST00000439886 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
SMPD4-209ENST00000439886 ABCC9O60706 1549 aa17.33■□□□□ 0.36
SMPD4-209ENST00000439886 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
SMPD4-209ENST00000439886 ANP32EQ9BTT0 268 aa17.2■□□□□ 0.34
SMPD4-209ENST00000439886 BCANQ96GW7 911 aa17.2■□□□□ 0.34
SMPD4-209ENST00000439886 RB1CC1Q8TDY2 1594 aa17.14■□□□□ 0.33
SMPD4-209ENST00000439886 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
SMPD4-209ENST00000439886 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
SMPD4-209ENST00000439886 SLC24A1O60721 1099 aa17.07■□□□□ 0.32
SMPD4-209ENST00000439886 SUPT16HQ9Y5B9 1047 aaKnown RBP17.03■□□□□ 0.32
SMPD4-209ENST00000439886 CEP162Q5TB80 1403 aa16.93■□□□□ 0.3
SMPD4-209ENST00000439886 ITGAEP38570 1179 aa16.93■□□□□ 0.3
SMPD4-209ENST00000439886 TSHZ2Q9NRE2 1034 aa16.93■□□□□ 0.3
SMPD4-209ENST00000439886 FKBP8Q14318 412 aa16.86■□□□□ 0.29
SMPD4-209ENST00000439886 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
SMPD4-209ENST00000439886 ANO8Q9HCE9 1232 aaPredicted RBP16.85■□□□□ 0.29
SMPD4-209ENST00000439886 NEFLP07196 543 aa16.83■□□□□ 0.28
SMPD4-209ENST00000439886 KCNH8Q96L42 1107 aa16.79■□□□□ 0.28
SMPD4-209ENST00000439886 SOGA1O94964 1423 aa16.78■□□□□ 0.28
SMPD4-209ENST00000439886 EIF5BO60841 1220 aaKnown RBP16.78■□□□□ 0.28
SMPD4-209ENST00000439886 CCDC88BA6NC98 1476 aa16.73■□□□□ 0.27
SMPD4-209ENST00000439886 ABCC8Q09428 1581 aa16.73■□□□□ 0.27
SMPD4-209ENST00000439886 MROH2BQ7Z745 1585 aa16.71■□□□□ 0.27
SMPD4-209ENST00000439886 TRIM52Q96A61 297 aa16.69■□□□□ 0.26
SMPD4-209ENST00000439886 TNIKQ9UKE5 1360 aa16.69■□□□□ 0.26
SMPD4-209ENST00000439886 CLSPNQ9HAW4 1339 aa16.68■□□□□ 0.26
SMPD4-209ENST00000439886 DDX10Q13206 875 aaKnown RBP16.68■□□□□ 0.26
SMPD4-209ENST00000439886 HIRIP3Q9BW71 556 aaPredicted RBP16.67■□□□□ 0.26
SMPD4-209ENST00000439886 WRNQ14191 1432 aaPredicted RBP eCLIP16.65■□□□□ 0.265e-6■■■■■ 34.5
SMPD4-209ENST00000439886 NACADO15069 1562 aa16.65■□□□□ 0.26
SMPD4-209ENST00000439886 RUSC2Q8N2Y8 1516 aa16.64■□□□□ 0.25
SMPD4-209ENST00000439886 WIZO95785 1651 aa16.64■□□□□ 0.25
SMPD4-209ENST00000439886 CCDC136Q96JN2 1154 aa16.62■□□□□ 0.25
SMPD4-209ENST00000439886 RBM19Q9Y4C8 960 aaKnown RBP16.62■□□□□ 0.25
SMPD4-209ENST00000439886 IRX6P78412 446 aaPredicted RBP16.6■□□□□ 0.25
SMPD4-209ENST00000439886 CLIP1P30622 1438 aa16.56■□□□□ 0.24
SMPD4-209ENST00000439886 ATP1B4Q9UN42 357 aaPredicted RBP16.53■□□□□ 0.24
SMPD4-209ENST00000439886 GOLGA3Q08378 1498 aa16.51■□□□□ 0.23
SMPD4-209ENST00000439886 PLEKHG5O94827 1062 aa16.51■□□□□ 0.23
SMPD4-209ENST00000439886 SALL2Q9Y467 1007 aaPredicted RBP16.49■□□□□ 0.23
SMPD4-209ENST00000439886 UBE2Q2Q8WVN8 375 aa16.46■□□□□ 0.23
SMPD4-209ENST00000439886 ANP32CO43423 234 aa16.44■□□□□ 0.22
SMPD4-209ENST00000439886 CDK11AQ9UQ88 783 aaPredicted RBP16.44■□□□□ 0.22
SMPD4-209ENST00000439886 DHX57Q6P158 1386 aaKnown RBP16.44■□□□□ 0.22
SMPD4-209ENST00000439886 KANK4Q5T7N3 995 aaPredicted RBP16.43■□□□□ 0.22
SMPD4-209ENST00000439886 DAXXQ9UER7 740 aaPredicted RBP16.43■□□□□ 0.22
SMPD4-209ENST00000439886 CNGB1Q14028 1251 aaPredicted RBP16.42■□□□□ 0.22
SMPD4-209ENST00000439886 SIN3AQ96ST3 1273 aa16.41■□□□□ 0.22
SMPD4-209ENST00000439886 PABPN1Q86U42 306 aaKnown RBP eCLIP16.41■□□□□ 0.222e-6■■□□□ 12.8
SMPD4-209ENST00000439886 FAM50AQ14320 339 aaKnown RBP16.41■□□□□ 0.22
SMPD4-209ENST00000439886 NBR1Q14596 966 aa16.38■□□□□ 0.21
SMPD4-209ENST00000439886 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.38■□□□□ 0.21
SMPD4-209ENST00000439886 HNRNPUQ00839 825 aaKnown RBP eCLIP16.37■□□□□ 0.21
SMPD4-209ENST00000439886 EEA1Q15075 1411 aa16.36■□□□□ 0.21
SMPD4-209ENST00000439886 VPS8Q8N3P4 1428 aa16.36■□□□□ 0.21
SMPD4-209ENST00000439886 MSH5O43196 834 aa16.35■□□□□ 0.21
SMPD4-209ENST00000439886 PKNOX2Q96KN3 472 aa16.31■□□□□ 0.2
SMPD4-209ENST00000439886 PODXL2Q9NZ53 605 aa16.3■□□□□ 0.2
SMPD4-209ENST00000439886 CEP164Q9UPV0 1460 aa16.3■□□□□ 0.2
SMPD4-209ENST00000439886 BAZ1AQ9NRL2 1556 aaPredicted RBP16.26■□□□□ 0.19
SMPD4-209ENST00000439886 DEKP35659 375 aaKnown RBP16.26■□□□□ 0.19
SMPD4-209ENST00000439886 RAPGEF2Q9Y4G8 1499 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms