Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
PEX3P56589 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PEX3P56589 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
PEX3P56589 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.99■■□□□ 1.11
PEX3P56589 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PEX3P56589 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.99■■□□□ 1.11
PEX3P56589 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
PEX3P56589 KRT18P29-201ENST00000397031 1267 ntBASIC21.99■■□□□ 1.11
PEX3P56589 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
PEX3P56589 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PEX3P56589 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.99■■□□□ 1.11
PEX3P56589 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PEX3P56589 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.99■■□□□ 1.11
PEX3P56589 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PEX3P56589 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.99■■□□□ 1.11
PEX3P56589 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
PEX3P56589 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.98■■□□□ 1.11
PEX3P56589 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.98■■□□□ 1.11
PEX3P56589 AC099778.1-201ENST00000568593 1911 ntBASIC21.98■■□□□ 1.11
PEX3P56589 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.98■■□□□ 1.11
PEX3P56589 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 AC069544.1-201ENST00000609399 999 ntBASIC21.98■■□□□ 1.11
PEX3P56589 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.98■■□□□ 1.11
PEX3P56589 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PEX3P56589 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.98■■□□□ 1.11
PEX3P56589 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.97■■□□□ 1.11
PEX3P56589 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.97■■□□□ 1.11
PEX3P56589 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
PEX3P56589 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
PEX3P56589 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
PEX3P56589 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.97■■□□□ 1.11
PEX3P56589 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.97■■□□□ 1.11
PEX3P56589 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
PEX3P56589 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.97■■□□□ 1.11
PEX3P56589 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
PEX3P56589 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PEX3P56589 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.96■■□□□ 1.11
PEX3P56589 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PEX3P56589 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.96■■□□□ 1.11
PEX3P56589 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.95■■□□□ 1.1
PEX3P56589 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
PEX3P56589 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
PEX3P56589 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
PEX3P56589 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.95■■□□□ 1.1
PEX3P56589 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PEX3P56589 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms