RNA–Protein interactions for RNA: ENST00000376575.7

DDR1-228, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 1 (best) BASIC

Gene DDR1, Length 732 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-228ENST00000376575 NISCHQ9Y2I1 1504 aa48■■■■■ 5.27
DDR1-228ENST00000376575 CCDC180Q9P1Z9 1646 aa42.52■■■■■ 4.4
DDR1-228ENST00000376575 ABCC9O60706 1549 aa41.19■■■■■ 4.18
DDR1-228ENST00000376575 ZCCHC6Q5VYS8 1495 aaKnown RBP40.07■■■■■ 4
DDR1-228ENST00000376575 NACADO15069 1562 aa39.91■■■■□ 3.98
DDR1-228ENST00000376575 MYO15BQ96JP2 1530 aa39.86■■■■□ 3.97
DDR1-228ENST00000376575 RB1CC1Q8TDY2 1594 aa39.82■■■■□ 3.97
DDR1-228ENST00000376575 DCAF1Q9Y4B6 1507 aa39.8■■■■□ 3.96
DDR1-228ENST00000376575 DCAF8L2P0C7V8 631 aa39.76■■■■□ 3.96
DDR1-228ENST00000376575 UNC13AQ9UPW8 1703 aa38.97■■■■□ 3.83
DDR1-228ENST00000376575 SCRIBQ14160 1630 aa38.74■■■■□ 3.79
DDR1-228ENST00000376575 BICRAQ9NZM4 1560 aa38.68■■■■□ 3.78
DDR1-228ENST00000376575 PABPN1Q86U42 306 aaKnown RBP eCLIP38.55■■■■□ 3.76
DDR1-228ENST00000376575 SHROOM4Q9ULL8 1493 aa38.31■■■■□ 3.72
DDR1-228ENST00000376575 DNAJC5BQ9UF47 199 aa37.6■■■■□ 3.61
DDR1-228ENST00000376575 EIF4G1Q04637 1599 aaKnown RBP37.59■■■■□ 3.61
DDR1-228ENST00000376575 CECR2Q9BXF3 1484 aa37.34■■■■□ 3.57
DDR1-228ENST00000376575 CC2D2AQ9P2K1 1620 aa37.33■■■■□ 3.57
DDR1-228ENST00000376575 SMARCA4P51532 1647 aa37.15■■■■□ 3.54
DDR1-228ENST00000376575 BAZ1AQ9NRL2 1556 aaPredicted RBP37.15■■■■□ 3.54
DDR1-228ENST00000376575 MROH2BQ7Z745 1585 aa36.98■■■■□ 3.51
DDR1-228ENST00000376575 ATAD2BQ9ULI0 1458 aa36.89■■■■□ 3.5
DDR1-228ENST00000376575 PEG3Q9GZU2 1588 aa36.87■■■■□ 3.49
DDR1-228ENST00000376575 NCAPD3P42695 1498 aa36.85■■■■□ 3.49
DDR1-228ENST00000376575 SMARCA2P51531 1590 aa36.83■■■■□ 3.49
DDR1-228ENST00000376575 RSF1Q96T23 1441 aaPredicted RBP36.69■■■■□ 3.46
DDR1-228ENST00000376575 HMGXB3Q12766 1538 aa36.67■■■■□ 3.46
DDR1-228ENST00000376575 WIZO95785 1651 aa36.57■■■■□ 3.44
DDR1-228ENST00000376575 BAZ1BQ9UIG0 1483 aaKnown RBP36.54■■■■□ 3.44
DDR1-228ENST00000376575 TOP2AP11388 1531 aaKnown RBP36.22■■■■□ 3.39
DDR1-228ENST00000376575 SUPT5HO00267 1087 aaKnown RBP35.85■■■■□ 3.33
DDR1-228ENST00000376575 CCDC88BA6NC98 1476 aa35.8■■■■□ 3.32
DDR1-228ENST00000376575 NESP48681 1621 aa35.78■■■■□ 3.32
DDR1-228ENST00000376575 LAMC3Q9Y6N6 1575 aa35.77■■■■□ 3.32
DDR1-228ENST00000376575 CADPSQ9ULU8 1353 aa35.76■■■■□ 3.31
DDR1-228ENST00000376575 CFTRP13569 1480 aa35.64■■■■□ 3.3
DDR1-228ENST00000376575 PDS5BQ9NTI5 1447 aa35.5■■■■□ 3.27
DDR1-228ENST00000376575 ERCC6Q03468 1493 aa35.44■■■■□ 3.26
DDR1-228ENST00000376575 KIF21AQ7Z4S6 1674 aa35.37■■■■□ 3.25
DDR1-228ENST00000376575 PRDM2Q13029 1718 aa35.36■■■■□ 3.25
DDR1-228ENST00000376575 FANCD2Q9BXW9 1451 aa35.3■■■■□ 3.24
DDR1-228ENST00000376575 CEP164Q9UPV0 1460 aa35.21■■■■□ 3.23
DDR1-228ENST00000376575 THOC2Q8NI27 1593 aaKnown RBP35.21■■■■□ 3.23
DDR1-228ENST00000376575 MRC2Q9UBG0 1479 aa35.11■■■■□ 3.21
DDR1-228ENST00000376575 CUX2O14529 1486 aa35.05■■■■□ 3.2
DDR1-228ENST00000376575 WDR62O43379 1518 aa35.03■■■■□ 3.2
DDR1-228ENST00000376575 URB2Q14146 1524 aaKnown RBP34.96■■■■□ 3.19
DDR1-228ENST00000376575 ABCC8Q09428 1581 aa34.83■■■■□ 3.17
DDR1-228ENST00000376575 TOPBP1Q92547 1522 aa34.8■■■■□ 3.16
DDR1-228ENST00000376575 DNMBPQ6XZF7 1577 aa34.79■■■■□ 3.16
DDR1-228ENST00000376575 CUX1P39880 1505 aa34.67■■■■□ 3.14
DDR1-228ENST00000376575 WRNQ14191 1432 aaPredicted RBP eCLIP34.54■■■■□ 3.12
DDR1-228ENST00000376575 POLA1P09884 1462 aaPredicted RBP34.53■■■■□ 3.12
DDR1-228ENST00000376575 IFT140Q96RY7 1462 aa34.49■■■■□ 3.11
DDR1-228ENST00000376575 TOP2BQ02880 1626 aa34.47■■■■□ 3.11
DDR1-228ENST00000376575 FGD5Q6ZNL6 1462 aa34.46■■■■□ 3.11
DDR1-228ENST00000376575 BIVM-ERCC5R4GMW8 1640 aa34.46■■■■□ 3.11
DDR1-228ENST00000376575 SYNJ1O43426 1573 aa34.45■■■■□ 3.11
DDR1-228ENST00000376575 TARBP1Q13395 1621 aaKnown RBP34.43■■■■□ 3.1
DDR1-228ENST00000376575 SOGA1O94964 1423 aa34.37■■■■□ 3.09
DDR1-228ENST00000376575 RAD54L2Q9Y4B4 1467 aa34.35■■■■□ 3.09
DDR1-228ENST00000376575 ZNF608Q9ULD9 1512 aaPredicted RBP34.31■■■■□ 3.08
DDR1-228ENST00000376575 WDR97A6NE52 1622 aa34.22■■■■□ 3.07
DDR1-228ENST00000376575 ABCA10Q8WWZ4 1543 aa34.2■■■■□ 3.07
DDR1-228ENST00000376575 EIF4G3O43432 1585 aaKnown RBP34.17■■■■□ 3.06
DDR1-228ENST00000376575 AQRO60306 1485 aaKnown RBP eCLIP34.14■■■■□ 3.062e-7■■■■■ 30
DDR1-228ENST00000376575 TDRD9Q8NDG6 1382 aaKnown RBP34.11■■■■□ 3.05
DDR1-228ENST00000376575 ABCA5Q8WWZ7 1642 aa34.03■■■■□ 3.04
DDR1-228ENST00000376575 GAPVD1Q14C86 1478 aa33.98■■■■□ 3.03
DDR1-228ENST00000376575 GRIN2BQ13224 1484 aa33.94■■■■□ 3.02
DDR1-228ENST00000376575 TRIM41Q8WV44 630 aa33.89■■■■□ 3.02
DDR1-228ENST00000376575 PBRM1Q86U86 1689 aa33.87■■■■□ 3.01
DDR1-228ENST00000376575 MAGI1Q96QZ7 1491 aaPredicted RBP33.83■■■■□ 3.01
DDR1-228ENST00000376575 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3.01
DDR1-228ENST00000376575 ERICH3Q5RHP9 1530 aa33.79■■■■□ 3
DDR1-228ENST00000376575 KIF27Q86VH2 1401 aa33.79■■■■□ 3
DDR1-228ENST00000376575 CHIC1Q5VXU3 224 aa33.76■■■□□ 2.99
DDR1-228ENST00000376575 SYNJ2O15056 1496 aa33.69■■■□□ 2.98
DDR1-228ENST00000376575 IGF1RP08069 1367 aa33.67■■■□□ 2.98
DDR1-228ENST00000376575 CHD1O14646 1710 aa33.66■■■□□ 2.98
DDR1-228ENST00000376575 ADAMTS12P58397 1594 aa33.64■■■□□ 2.98
DDR1-228ENST00000376575 OSCARQ8IYS5 282 aa33.62■■■□□ 2.97
DDR1-228ENST00000376575 FHAD1B1AJZ9 1412 aa33.62■■■□□ 2.97
DDR1-228ENST00000376575 RUSC2Q8N2Y8 1516 aa33.6■■■□□ 2.97
DDR1-228ENST00000376575 DNAJC5Q9H3Z4 198 aa33.59■■■□□ 2.97
DDR1-228ENST00000376575 CHMP7Q8WUX9 453 aaPredicted RBP33.58■■■□□ 2.97
DDR1-228ENST00000376575 FBLN2P98095 1184 aa33.55■■■□□ 2.96
DDR1-228ENST00000376575 CUL7Q14999 1698 aa33.52■■■□□ 2.96
DDR1-228ENST00000376575 GRIN2AQ12879 1464 aa33.5■■■□□ 2.95
DDR1-228ENST00000376575 CARMIL1Q5VZK9 1371 aa33.43■■■□□ 2.94
DDR1-228ENST00000376575 NUP160Q12769 1436 aa33.39■■■□□ 2.94
DDR1-228ENST00000376575 EEA1Q15075 1411 aa33.38■■■□□ 2.93
DDR1-228ENST00000376575 CLASP1Q7Z460 1538 aa33.37■■■□□ 2.93
DDR1-228ENST00000376575 CEP170Q5SW79 1584 aa33.33■■■□□ 2.93
DDR1-228ENST00000376575 PRXQ9BXM0 1461 aa33.3■■■□□ 2.92
DDR1-228ENST00000376575 CSRNP3Q8WYN3 585 aa33.27■■■□□ 2.92
DDR1-228ENST00000376575 RAPGEF2Q9Y4G8 1499 aa33.26■■■□□ 2.92
DDR1-228ENST00000376575 KIAA0586Q9BVV6 1533 aa33.12■■■□□ 2.89
DDR1-228ENST00000376575 SHROOM2Q13796 1616 aa33.1■■■□□ 2.89
DDR1-228ENST00000376575 FAM9AQ8IZU1 332 aaPredicted RBP33.1■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms