RNA–Protein interactions for RNA: ENST00000308298.11

SSH3-202, Transcript of slingshot protein phosphatase 3, humanhuman

TSL 2 BASIC

Gene SSH3, Length 2,046 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-202ENST00000308298 NISCHQ9Y2I1 1504 aa44■■■■■ 4.63
SSH3-202ENST00000308298 CCDC180Q9P1Z9 1646 aa38.04■■■■□ 3.68
SSH3-202ENST00000308298 ZCCHC6Q5VYS8 1495 aaKnown RBP37.11■■■■□ 3.53
SSH3-202ENST00000308298 SHROOM4Q9ULL8 1493 aa36.49■■■■□ 3.43
SSH3-202ENST00000308298 DCAF1Q9Y4B6 1507 aa36.33■■■■□ 3.41
SSH3-202ENST00000308298 DCAF8L2P0C7V8 631 aa36.18■■■■□ 3.38
SSH3-202ENST00000308298 MYO15BQ96JP2 1530 aa35.62■■■■□ 3.29
SSH3-202ENST00000308298 SUPT5HO00267 1087 aaKnown RBP35.42■■■■□ 3.26
SSH3-202ENST00000308298 ABCC9O60706 1549 aa35.41■■■■□ 3.26
SSH3-202ENST00000308298 NACADO15069 1562 aa35.24■■■■□ 3.23
SSH3-202ENST00000308298 SCRIBQ14160 1630 aa35.17■■■■□ 3.22
SSH3-202ENST00000308298 RB1CC1Q8TDY2 1594 aa34.8■■■■□ 3.16
SSH3-202ENST00000308298 RSF1Q96T23 1441 aaPredicted RBP34.41■■■■□ 3.1
SSH3-202ENST00000308298 UNC13AQ9UPW8 1703 aa34.25■■■■□ 3.07
SSH3-202ENST00000308298 CHIC1Q5VXU3 224 aa34.23■■■■□ 3.07
SSH3-202ENST00000308298 CECR2Q9BXF3 1484 aa34.18■■■■□ 3.06
SSH3-202ENST00000308298 MROH2BQ7Z745 1585 aa34.06■■■■□ 3.04
SSH3-202ENST00000308298 BAZ1AQ9NRL2 1556 aaPredicted RBP33.92■■■■□ 3.02
SSH3-202ENST00000308298 WIZO95785 1651 aa33.87■■■■□ 3.01
SSH3-202ENST00000308298 BICRAQ9NZM4 1560 aa33.78■■■■□ 3
SSH3-202ENST00000308298 SMARCA4P51532 1647 aa33.71■■■□□ 2.99
SSH3-202ENST00000308298 PABPN1Q86U42 306 aaKnown RBP eCLIP33.53■■■□□ 2.96
SSH3-202ENST00000308298 TOP2AP11388 1531 aaKnown RBP33.46■■■□□ 2.95
SSH3-202ENST00000308298 EIF4G1Q04637 1599 aaKnown RBP33.23■■■□□ 2.91
SSH3-202ENST00000308298 PEG3Q9GZU2 1588 aa33.22■■■□□ 2.91
SSH3-202ENST00000308298 TRIM41Q8WV44 630 aa33.21■■■□□ 2.91
SSH3-202ENST00000308298 SMARCA2P51531 1590 aa33.2■■■□□ 2.9
SSH3-202ENST00000308298 CCDC88BA6NC98 1476 aa33.15■■■□□ 2.9
SSH3-202ENST00000308298 LOC105371045A0A1W2PR82 267 aa33■■■□□ 2.87
SSH3-202ENST00000308298 ATAD2BQ9ULI0 1458 aa32.95■■■□□ 2.87
SSH3-202ENST00000308298 BAZ1BQ9UIG0 1483 aaKnown RBP32.82■■■□□ 2.85
SSH3-202ENST00000308298 ABCC8Q09428 1581 aa32.74■■■□□ 2.83
SSH3-202ENST00000308298 FAM9AQ8IZU1 332 aaPredicted RBP32.69■■■□□ 2.82
SSH3-202ENST00000308298 HMGXB3Q12766 1538 aa32.55■■■□□ 2.8
SSH3-202ENST00000308298 NCAPD3P42695 1498 aa32.51■■■□□ 2.8
SSH3-202ENST00000308298 WRNQ14191 1432 aaPredicted RBP eCLIP32.37■■■□□ 2.77
SSH3-202ENST00000308298 SYNJ1O43426 1573 aa32.26■■■□□ 2.76
SSH3-202ENST00000308298 EHMT2Q96KQ7 1210 aa32.26■■■□□ 2.75
SSH3-202ENST00000308298 EEA1Q15075 1411 aa32.24■■■□□ 2.75
SSH3-202ENST00000308298 PCGF6Q9BYE7 350 aa32.23■■■□□ 2.75
SSH3-202ENST00000308298 SOGA1O94964 1423 aa32.23■■■□□ 2.75
SSH3-202ENST00000308298 RUSC2Q8N2Y8 1516 aa32.08■■■□□ 2.73
SSH3-202ENST00000308298 CC2D2AQ9P2K1 1620 aa32.06■■■□□ 2.72
SSH3-202ENST00000308298 TOP2BQ02880 1626 aa32.05■■■□□ 2.72
SSH3-202ENST00000308298 CSRNP3Q8WYN3 585 aa32.02■■■□□ 2.72
SSH3-202ENST00000308298 BIVM-ERCC5R4GMW8 1640 aa32.01■■■□□ 2.72
SSH3-202ENST00000308298 CFTRP13569 1480 aa32.01■■■□□ 2.71
SSH3-202ENST00000308298 TRIM26Q12899 539 aaPredicted RBP32■■■□□ 2.71
SSH3-202ENST00000308298 PRDM2Q13029 1718 aa31.98■■■□□ 2.71
SSH3-202ENST00000308298 TNIKQ9UKE5 1360 aa31.88■■■□□ 2.69
SSH3-202ENST00000308298 GOLGA3Q08378 1498 aa31.87■■■□□ 2.69
SSH3-202ENST00000308298 HRCP23327 699 aa31.85■■■□□ 2.69
SSH3-202ENST00000308298 KIF21BO75037 1637 aa31.84■■■□□ 2.69
SSH3-202ENST00000308298 CEP162Q5TB80 1403 aa31.81■■■□□ 2.68
SSH3-202ENST00000308298 CUX1P39880 1505 aa31.8■■■□□ 2.68
SSH3-202ENST00000308298 CEP164Q9UPV0 1460 aa31.8■■■□□ 2.68
SSH3-202ENST00000308298 CADPSQ9ULU8 1353 aa31.74■■■□□ 2.67
SSH3-202ENST00000308298 UBTFP17480 764 aaKnown RBP31.71■■■□□ 2.67
SSH3-202ENST00000308298 RAPGEF2Q9Y4G8 1499 aa31.54■■■□□ 2.64
SSH3-202ENST00000308298 KIF27Q86VH2 1401 aa31.47■■■□□ 2.63
SSH3-202ENST00000308298 ERICH3Q5RHP9 1530 aa31.47■■■□□ 2.63
SSH3-202ENST00000308298 PRXQ9BXM0 1461 aa31.44■■■□□ 2.62
SSH3-202ENST00000308298 FANCD2Q9BXW9 1451 aa31.44■■■□□ 2.62
SSH3-202ENST00000308298 PPARGC1BQ86YN6 1023 aaKnown RBP31.42■■■□□ 2.62
SSH3-202ENST00000308298 CLIP1P30622 1438 aa31.39■■■□□ 2.62
SSH3-202ENST00000308298 FGD5Q6ZNL6 1462 aa31.34■■■□□ 2.61
SSH3-202ENST00000308298 LAMC3Q9Y6N6 1575 aa31.33■■■□□ 2.61
SSH3-202ENST00000308298 NESP48681 1621 aa31.32■■■□□ 2.6
SSH3-202ENST00000308298 DNMBPQ6XZF7 1577 aa31.28■■■□□ 2.6
SSH3-202ENST00000308298 CUX2O14529 1486 aa31.27■■■□□ 2.6
SSH3-202ENST00000308298 VPS8Q8N3P4 1428 aa31.21■■■□□ 2.59
SSH3-202ENST00000308298 TOPBP1Q92547 1522 aa31.17■■■□□ 2.58
SSH3-202ENST00000308298 IGF1RP08069 1367 aa31.12■■■□□ 2.57
SSH3-202ENST00000308298 POLA1P09884 1462 aaPredicted RBP31.08■■■□□ 2.57
SSH3-202ENST00000308298 DNAJC5BQ9UF47 199 aa31.07■■■□□ 2.56
SSH3-202ENST00000308298 TTBK1Q5TCY1 1321 aaPredicted RBP31.06■■■□□ 2.56
SSH3-202ENST00000308298 ZEB1P37275 1124 aaPredicted RBP31.06■■■□□ 2.56
SSH3-202ENST00000308298 ABCA10Q8WWZ4 1543 aa31.05■■■□□ 2.56
SSH3-202ENST00000308298 RANGAP1P46060 587 aaPredicted RBP31.05■■■□□ 2.56
SSH3-202ENST00000308298 PDS5BQ9NTI5 1447 aa31.04■■■□□ 2.56
SSH3-202ENST00000308298 URB2Q14146 1524 aaKnown RBP31.02■■■□□ 2.56
SSH3-202ENST00000308298 ARAP1Q96P48 1450 aa31.01■■■□□ 2.56
SSH3-202ENST00000308298 RAD54L2Q9Y4B4 1467 aa31.01■■■□□ 2.55
SSH3-202ENST00000308298 CARMIL1Q5VZK9 1371 aa30.98■■■□□ 2.55
SSH3-202ENST00000308298 KIF21AQ7Z4S6 1674 aa30.98■■■□□ 2.55
SSH3-202ENST00000308298 WDR97A6NE52 1622 aa30.95■■■□□ 2.54
SSH3-202ENST00000308298 APLP2Q06481 763 aa30.9■■■□□ 2.54
SSH3-202ENST00000308298 ARHGAP35Q9NRY4 1499 aa30.87■■■□□ 2.53
SSH3-202ENST00000308298 CUL7Q14999 1698 aa30.86■■■□□ 2.53
SSH3-202ENST00000308298 ABCA5Q8WWZ7 1642 aa30.78■■■□□ 2.52
SSH3-202ENST00000308298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.7■■■□□ 2.51
SSH3-202ENST00000308298 TARBP1Q13395 1621 aaKnown RBP30.67■■■□□ 2.5
SSH3-202ENST00000308298 CTTNBP2Q8WZ74 1663 aa30.67■■■□□ 2.5
SSH3-202ENST00000308298 CCER1Q8TC90 406 aaPredicted RBP30.65■■■□□ 2.5
SSH3-202ENST00000308298 GAPVD1Q14C86 1478 aa30.65■■■□□ 2.5
SSH3-202ENST00000308298 TDRD9Q8NDG6 1382 aaKnown RBP30.63■■■□□ 2.49
SSH3-202ENST00000308298 MRC2Q9UBG0 1479 aa30.63■■■□□ 2.49
SSH3-202ENST00000308298 EFCAB5A4FU69 1503 aa30.55■■■□□ 2.48
SSH3-202ENST00000308298 KANK4Q5T7N3 995 aaPredicted RBP30.54■■■□□ 2.48
SSH3-202ENST00000308298 MAP3K1Q13233 1512 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms