RNA–Protein interactions for RNA: ENST00000287814.4

TIMP4-201, Transcript of TIMP metallopeptidase inhibitor 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP4, Length 1,650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4-201ENST00000287814 NISCHQ9Y2I1 1504 aa47.97■■■■■ 5.27
TIMP4-201ENST00000287814 CCDC180Q9P1Z9 1646 aa42.45■■■■■ 4.39
TIMP4-201ENST00000287814 ABCC9O60706 1549 aa41.51■■■■■ 4.24
TIMP4-201ENST00000287814 DCAF8L2P0C7V8 631 aa40.09■■■■■ 4.01
TIMP4-201ENST00000287814 ZCCHC6Q5VYS8 1495 aaKnown RBP39.99■■■■□ 3.99
TIMP4-201ENST00000287814 NACADO15069 1562 aa39.91■■■■□ 3.98
TIMP4-201ENST00000287814 RB1CC1Q8TDY2 1594 aa39.9■■■■□ 3.98
TIMP4-201ENST00000287814 MYO15BQ96JP2 1530 aa39.72■■■■□ 3.95
TIMP4-201ENST00000287814 DCAF1Q9Y4B6 1507 aa39.64■■■■□ 3.94
TIMP4-201ENST00000287814 UNC13AQ9UPW8 1703 aa39.01■■■■□ 3.84
TIMP4-201ENST00000287814 PABPN1Q86U42 306 aaKnown RBP eCLIP38.89■■■■□ 3.82
TIMP4-201ENST00000287814 SCRIBQ14160 1630 aa38.85■■■■□ 3.81
TIMP4-201ENST00000287814 BICRAQ9NZM4 1560 aa38.78■■■■□ 3.8
TIMP4-201ENST00000287814 SHROOM4Q9ULL8 1493 aa38.24■■■■□ 3.71
TIMP4-201ENST00000287814 DNAJC5BQ9UF47 199 aa38.04■■■■□ 3.68
TIMP4-201ENST00000287814 EIF4G1Q04637 1599 aaKnown RBP37.7■■■■□ 3.63
TIMP4-201ENST00000287814 CC2D2AQ9P2K1 1620 aa37.51■■■■□ 3.59
TIMP4-201ENST00000287814 CECR2Q9BXF3 1484 aa37.43■■■■□ 3.58
TIMP4-201ENST00000287814 SMARCA4P51532 1647 aa37.15■■■■□ 3.54
TIMP4-201ENST00000287814 BAZ1AQ9NRL2 1556 aaPredicted RBP37.12■■■■□ 3.53
TIMP4-201ENST00000287814 MROH2BQ7Z745 1585 aa37.02■■■■□ 3.52
TIMP4-201ENST00000287814 ATAD2BQ9ULI0 1458 aa36.95■■■■□ 3.51
TIMP4-201ENST00000287814 NCAPD3P42695 1498 aa36.89■■■■□ 3.5
TIMP4-201ENST00000287814 SMARCA2P51531 1590 aa36.84■■■■□ 3.49
TIMP4-201ENST00000287814 PEG3Q9GZU2 1588 aa36.78■■■■□ 3.48
TIMP4-201ENST00000287814 RSF1Q96T23 1441 aaPredicted RBP36.68■■■■□ 3.46
TIMP4-201ENST00000287814 HMGXB3Q12766 1538 aa36.66■■■■□ 3.46
TIMP4-201ENST00000287814 BAZ1BQ9UIG0 1483 aaKnown RBP36.62■■■■□ 3.45
TIMP4-201ENST00000287814 WIZO95785 1651 aa36.6■■■■□ 3.45
TIMP4-201ENST00000287814 TOP2AP11388 1531 aaKnown RBP36.18■■■■□ 3.38
TIMP4-201ENST00000287814 NESP48681 1621 aa36■■■■□ 3.35
TIMP4-201ENST00000287814 SUPT5HO00267 1087 aaKnown RBP35.94■■■■□ 3.34
TIMP4-201ENST00000287814 CADPSQ9ULU8 1353 aa35.84■■■■□ 3.33
TIMP4-201ENST00000287814 CCDC88BA6NC98 1476 aa35.83■■■■□ 3.33
TIMP4-201ENST00000287814 LAMC3Q9Y6N6 1575 aa35.81■■■■□ 3.32
TIMP4-201ENST00000287814 ERCC6Q03468 1493 aa35.69■■■■□ 3.3
TIMP4-201ENST00000287814 CFTRP13569 1480 aa35.66■■■■□ 3.3
TIMP4-201ENST00000287814 PDS5BQ9NTI5 1447 aa35.6■■■■□ 3.29
TIMP4-201ENST00000287814 KIF21AQ7Z4S6 1674 aa35.48■■■■□ 3.27
TIMP4-201ENST00000287814 FANCD2Q9BXW9 1451 aa35.41■■■■□ 3.26
TIMP4-201ENST00000287814 THOC2Q8NI27 1593 aaKnown RBP35.32■■■■□ 3.24
TIMP4-201ENST00000287814 CEP164Q9UPV0 1460 aa35.31■■■■□ 3.24
TIMP4-201ENST00000287814 PRDM2Q13029 1718 aa35.26■■■■□ 3.24
TIMP4-201ENST00000287814 MRC2Q9UBG0 1479 aa35.23■■■■□ 3.23
TIMP4-201ENST00000287814 CUX2O14529 1486 aa35.22■■■■□ 3.23
TIMP4-201ENST00000287814 WDR62O43379 1518 aa35.1■■■■□ 3.21
TIMP4-201ENST00000287814 URB2Q14146 1524 aaKnown RBP35.07■■■■□ 3.21
TIMP4-201ENST00000287814 TOPBP1Q92547 1522 aa34.87■■■■□ 3.17
TIMP4-201ENST00000287814 ABCC8Q09428 1581 aa34.8■■■■□ 3.16
TIMP4-201ENST00000287814 DNMBPQ6XZF7 1577 aa34.8■■■■□ 3.16
TIMP4-201ENST00000287814 CUX1P39880 1505 aa34.7■■■■□ 3.14
TIMP4-201ENST00000287814 POLA1P09884 1462 aaPredicted RBP34.6■■■■□ 3.13
TIMP4-201ENST00000287814 IFT140Q96RY7 1462 aa34.57■■■■□ 3.12
TIMP4-201ENST00000287814 FGD5Q6ZNL6 1462 aa34.54■■■■□ 3.12
TIMP4-201ENST00000287814 WRNQ14191 1432 aaPredicted RBP eCLIP34.53■■■■□ 3.12
TIMP4-201ENST00000287814 RAD54L2Q9Y4B4 1467 aa34.48■■■■□ 3.11
TIMP4-201ENST00000287814 ZNF608Q9ULD9 1512 aaPredicted RBP34.48■■■■□ 3.11
TIMP4-201ENST00000287814 SOGA1O94964 1423 aa34.47■■■■□ 3.11
TIMP4-201ENST00000287814 TARBP1Q13395 1621 aaKnown RBP34.46■■■■□ 3.11
TIMP4-201ENST00000287814 SYNJ1O43426 1573 aa34.45■■■■□ 3.1
TIMP4-201ENST00000287814 TOP2BQ02880 1626 aa34.4■■■■□ 3.1
TIMP4-201ENST00000287814 BIVM-ERCC5R4GMW8 1640 aa34.37■■■■□ 3.09
TIMP4-201ENST00000287814 AQRO60306 1485 aaKnown RBP eCLIP34.31■■■■□ 3.08
TIMP4-201ENST00000287814 TDRD9Q8NDG6 1382 aaKnown RBP34.29■■■■□ 3.08
TIMP4-201ENST00000287814 EIF4G3O43432 1585 aaKnown RBP34.26■■■■□ 3.08
TIMP4-201ENST00000287814 ABCA10Q8WWZ4 1543 aa34.19■■■■□ 3.06
TIMP4-201ENST00000287814 WDR97A6NE52 1622 aa34.17■■■■□ 3.06
TIMP4-201ENST00000287814 GAPVD1Q14C86 1478 aa34.05■■■■□ 3.04
TIMP4-201ENST00000287814 ABCA5Q8WWZ7 1642 aa34.02■■■■□ 3.04
TIMP4-201ENST00000287814 DNAJC5Q9H3Z4 198 aa34.02■■■■□ 3.04
TIMP4-201ENST00000287814 GRIN2BQ13224 1484 aa34■■■■□ 3.03
TIMP4-201ENST00000287814 SNAPC4Q5SXM2 1469 aa33.95■■■■□ 3.03
TIMP4-201ENST00000287814 PBRM1Q86U86 1689 aa33.9■■■■□ 3.02
TIMP4-201ENST00000287814 TRIM41Q8WV44 630 aa33.88■■■■□ 3.01
TIMP4-201ENST00000287814 OSCARQ8IYS5 282 aa33.87■■■■□ 3.01
TIMP4-201ENST00000287814 MAGI1Q96QZ7 1491 aaPredicted RBP33.87■■■■□ 3.01
TIMP4-201ENST00000287814 FBLN2P98095 1184 aa33.86■■■■□ 3.01
TIMP4-201ENST00000287814 CHD1O14646 1710 aa33.78■■■■□ 3
TIMP4-201ENST00000287814 KIF27Q86VH2 1401 aa33.77■■■■□ 3
TIMP4-201ENST00000287814 CHMP7Q8WUX9 453 aaPredicted RBP33.77■■■■□ 3
TIMP4-201ENST00000287814 ERICH3Q5RHP9 1530 aa33.76■■■□□ 2.99
TIMP4-201ENST00000287814 SYNJ2O15056 1496 aa33.75■■■□□ 2.99
TIMP4-201ENST00000287814 IGF1RP08069 1367 aa33.69■■■□□ 2.98
TIMP4-201ENST00000287814 ADAMTS12P58397 1594 aa33.68■■■□□ 2.98
TIMP4-201ENST00000287814 CHIC1Q5VXU3 224 aa33.66■■■□□ 2.98
TIMP4-201ENST00000287814 FHAD1B1AJZ9 1412 aa33.65■■■□□ 2.98
TIMP4-201ENST00000287814 RUSC2Q8N2Y8 1516 aa33.65■■■□□ 2.98
TIMP4-201ENST00000287814 GRIN2AQ12879 1464 aa33.58■■■□□ 2.97
TIMP4-201ENST00000287814 CARMIL1Q5VZK9 1371 aa33.46■■■□□ 2.95
TIMP4-201ENST00000287814 CLASP1Q7Z460 1538 aa33.45■■■□□ 2.95
TIMP4-201ENST00000287814 CUL7Q14999 1698 aa33.44■■■□□ 2.94
TIMP4-201ENST00000287814 NUP160Q12769 1436 aa33.43■■■□□ 2.94
TIMP4-201ENST00000287814 CEP170Q5SW79 1584 aa33.41■■■□□ 2.94
TIMP4-201ENST00000287814 ARHGEF11O15085 1522 aa33.3■■■□□ 2.92
TIMP4-201ENST00000287814 RIMBP3CA6NJZ7 1639 aa33.27■■■□□ 2.92
TIMP4-201ENST00000287814 RIMBP3BA6NNM3 1639 aa33.27■■■□□ 2.92
TIMP4-201ENST00000287814 RIMBP3Q9UFD9 1639 aa33.27■■■□□ 2.92
TIMP4-201ENST00000287814 CSRNP3Q8WYN3 585 aa33.26■■■□□ 2.91
TIMP4-201ENST00000287814 RAPGEF2Q9Y4G8 1499 aa33.25■■■□□ 2.91
TIMP4-201ENST00000287814 FAM9AQ8IZU1 332 aaPredicted RBP33.24■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms