RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 DCAF8L2P0C7V8 631 aa35,64■■■■□ 3,3
UPF1-207ENST00000599848 FAM9AQ8IZU1 332 aaPredicted RBP33,19■■■□□ 2,9
UPF1-207ENST00000599848 NISCHQ9Y2I1 1504 aa33■■■□□ 2,87
UPF1-207ENST00000599848 SUPT5HO00267 1087 aaKnown RBP32,92■■■□□ 2,86
UPF1-207ENST00000599848 APLP2Q06481 763 aa32,58■■■□□ 2,81
UPF1-207ENST00000599848 PELP1Q8IZL8 1130 aaKnown RBP32,27■■■□□ 2,76
UPF1-207ENST00000599848 SHROOM4Q9ULL8 1493 aa32,11■■■□□ 2,73
UPF1-207ENST00000599848 EHMT2Q96KQ7 1210 aa31,7■■■□□ 2,67
UPF1-207ENST00000599848 ATP1B4Q9UN42 357 aaPredicted RBP31,13■■■□□ 2,57
UPF1-207ENST00000599848 TRIM41Q8WV44 630 aa30,88■■■□□ 2,53
UPF1-207ENST00000599848 CCER1Q8TC90 406 aaPredicted RBP30,87■■■□□ 2,53
UPF1-207ENST00000599848 RANGAP1P46060 587 aaPredicted RBP30,82■■■□□ 2,52
UPF1-207ENST00000599848 UBTFP17480 764 aaKnown RBP30,76■■■□□ 2,51
UPF1-207ENST00000599848 TTBK1Q5TCY1 1321 aaPredicted RBP30,64■■■□□ 2,5
UPF1-207ENST00000599848 MYT1LQ9UL68 1186 aa30,63■■■□□ 2,49
UPF1-207ENST00000599848 ZEB1P37275 1124 aaPredicted RBP30,59■■■□□ 2,49
UPF1-207ENST00000599848 ERICH6Q7L0X2 663 aa30,48■■■□□ 2,47
UPF1-207ENST00000599848 PCGF6Q9BYE7 350 aa30,43■■■□□ 2,46
UPF1-207ENST00000599848 CENPBP07199 599 aaPredicted RBP30,39■■■□□ 2,46
UPF1-207ENST00000599848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30,36■■■□□ 2,45
UPF1-207ENST00000599848 HNRNPUL2Q1KMD3 747 aaKnown RBP30,36■■■□□ 2,45
UPF1-207ENST00000599848 NEFLP07196 543 aa30,24■■■□□ 2,43
UPF1-207ENST00000599848 DAXXQ9UER7 740 aaPredicted RBP29,61■■■□□ 2,33
UPF1-207ENST00000599848 POLR3GLQ9BT43 218 aa29,57■■■□□ 2,32
UPF1-207ENST00000599848 SLC4A1APQ9BWU0 796 aaKnown RBP29,51■■■□□ 2,31
UPF1-207ENST00000599848 CHIC1Q5VXU3 224 aa29,49■■■□□ 2,31
UPF1-207ENST00000599848 ITGAEP38570 1179 aa29,47■■■□□ 2,31
UPF1-207ENST00000599848 TRIM26Q12899 539 aaPredicted RBP29,2■■■□□ 2,27
UPF1-207ENST00000599848 ABCC9O60706 1549 aa29,19■■■□□ 2,26
UPF1-207ENST00000599848 FBLN2P98095 1184 aa29,11■■■□□ 2,25
UPF1-207ENST00000599848 YTHDC1Q96MU7 727 aaKnown RBP29,11■■■□□ 2,25
UPF1-207ENST00000599848 PABPN1Q86U42 306 aaKnown RBP eCLIP29,09■■■□□ 2,25
UPF1-207ENST00000599848 TRIM52Q96A61 297 aa29,03■■■□□ 2,24
UPF1-207ENST00000599848 ESF1Q9H501 851 aaKnown RBP29,02■■■□□ 2,24
UPF1-207ENST00000599848 PPARGC1BQ86YN6 1023 aaKnown RBP29,01■■■□□ 2,23
UPF1-207ENST00000599848 FAM50AQ14320 339 aaKnown RBP28,98■■■□□ 2,23
UPF1-207ENST00000599848 ZBTB47Q9UFB7 747 aaPredicted RBP28,96■■■□□ 2,23
UPF1-207ENST00000599848 NEFMP07197 916 aa28,93■■■□□ 2,22
UPF1-207ENST00000599848 BCANQ96GW7 911 aa28,93■■■□□ 2,22
UPF1-207ENST00000599848 CLSPNQ9HAW4 1339 aa28,91■■■□□ 2,22
UPF1-207ENST00000599848 NPM1P06748 294 aaKnown RBP eCLIP28,85■■■□□ 2,21
UPF1-207ENST00000599848 CDK11AQ9UQ88 783 aaPredicted RBP28,84■■■□□ 2,21
UPF1-207ENST00000599848 CNGB1Q14028 1251 aaPredicted RBP28,77■■■□□ 2,2
UPF1-207ENST00000599848 MYT1Q01538 1121 aa28,77■■■□□ 2,2
UPF1-207ENST00000599848 ZNF316A6NFI3 1004 aaPredicted RBP28,73■■■□□ 2,19
UPF1-207ENST00000599848 SLC24A1O60721 1099 aa28,57■■■□□ 2,16
UPF1-207ENST00000599848 STAG3Q9UJ98 1225 aa28,52■■■□□ 2,16
UPF1-207ENST00000599848 ZNF326Q5BKZ1 582 aaKnown RBP28,5■■■□□ 2,15
UPF1-207ENST00000599848 RTL5Q5HYW3 569 aaPredicted RBP28,4■■■□□ 2,14
UPF1-207ENST00000599848 HRCP23327 699 aa28,38■■■□□ 2,13
UPF1-207ENST00000599848 CANXP27824 592 aaKnown RBP28,36■■■□□ 2,13
UPF1-207ENST00000599848 NEUROD1Q13562 356 aa28,35■■■□□ 2,13
UPF1-207ENST00000599848 LOC105371045A0A1W2PR82 267 aa28,33■■■□□ 2,13
UPF1-207ENST00000599848 ANP32CO43423 234 aa28,32■■■□□ 2,12
UPF1-207ENST00000599848 ZNF777Q9ULD5 760 aaPredicted RBP28,29■■■□□ 2,12
UPF1-207ENST00000599848 CHGAP10645 457 aaKnown RBP28,13■■■□□ 2,09
UPF1-207ENST00000599848 CSRNP3Q8WYN3 585 aa28,09■■■□□ 2,09
UPF1-207ENST00000599848 P3H3Q8IVL6 736 aa28,07■■■□□ 2,08
UPF1-207ENST00000599848 ARID3CA6NKF2 412 aa28,06■■■□□ 2,08
UPF1-207ENST00000599848 DIEXFQ68CQ4 756 aaKnown RBP27,99■■■□□ 2,07
UPF1-207ENST00000599848 PLPPR3Q6T4P5 718 aa27,98■■■□□ 2,07
UPF1-207ENST00000599848 NPM2Q86SE8 214 aaKnown RBP27,96■■■□□ 2,07
UPF1-207ENST00000599848 CHMP7Q8WUX9 453 aaPredicted RBP27,93■■■□□ 2,06
UPF1-207ENST00000599848 TSPY4P0CV99 314 aa27,91■■■□□ 2,06
UPF1-207ENST00000599848 TSPY10P0CW01 314 aa27,91■■■□□ 2,06
UPF1-207ENST00000599848 ACIN1Q9UKV3 1341 aaKnown RBP27,86■■■□□ 2,05
UPF1-207ENST00000599848 SCRIBQ14160 1630 aa27,83■■■□□ 2,05
UPF1-207ENST00000599848 BCL11AQ9H165 835 aa27,74■■■□□ 2,03
UPF1-207ENST00000599848 TONSLQ96HA7 1378 aa27,74■■■□□ 2,03
UPF1-207ENST00000599848 SCAF1Q9H7N4 1312 aaKnown RBP27,72■■■□□ 2,03
UPF1-207ENST00000599848 PPP1R15AO75807 674 aaPredicted RBP27,71■■■□□ 2,03
UPF1-207ENST00000599848 C14orf37Q86TY3 774 aa27,65■■■□□ 2,02
UPF1-207ENST00000599848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27,63■■■□□ 2,019e-7■■■□□ 15,5
UPF1-207ENST00000599848 UPF2Q9HAU5 1272 aaKnown RBP27,62■■■□□ 2,01
UPF1-207ENST00000599848 HAP1P54257 671 aaPredicted RBP27,59■■■□□ 2,01
UPF1-207ENST00000599848 GOLGA6L2Q8N9W4 650 aaPredicted RBP27,58■■■□□ 2
UPF1-207ENST00000599848 A0A0G2JS52 829 aa27,56■■■□□ 2
UPF1-207ENST00000599848 ANP32BQ92688 251 aaKnown RBP27,55■■■□□ 2
UPF1-207ENST00000599848 ARID4BQ4LE39 1312 aaPredicted RBP27,54■■■□□ 2
UPF1-207ENST00000599848 PLEKHD1A6NEE1 506 aa27,53■■■□□ 2
UPF1-207ENST00000599848 MTUS2Q5JR59 1369 aa27,53■■■□□ 2
UPF1-207ENST00000599848 HSP90AA1P07900 732 aaKnown RBP27,52■■■□□ 2
UPF1-207ENST00000599848 ANP32AP39687 249 aaKnown RBP27,47■■□□□ 1,99
UPF1-207ENST00000599848 WDR43Q15061 677 aaKnown RBP eCLIP27,47■■□□□ 1,99
UPF1-207ENST00000599848 RB1CC1Q8TDY2 1594 aa27,47■■□□□ 1,99
UPF1-207ENST00000599848 MYH16Q9H6N6 1097 aa27,42■■□□□ 1,98
UPF1-207ENST00000599848 CDK11BP21127 795 aaKnown RBP27,42■■□□□ 1,98
UPF1-207ENST00000599848 RSF1Q96T23 1441 aaPredicted RBP27,42■■□□□ 1,98
UPF1-207ENST00000599848 CDCA8Q53HL2 280 aa27,33■■□□□ 1,97
UPF1-207ENST00000599848 KCNH8Q96L42 1107 aa27,32■■□□□ 1,96
UPF1-207ENST00000599848 ERCC6Q03468 1493 aa27,31■■□□□ 1,96
UPF1-207ENST00000599848 TMC1Q8TDI8 760 aa27,3■■□□□ 1,96
UPF1-207ENST00000599848 CHIC2Q9UKJ5 165 aa27,29■■□□□ 1,96
UPF1-207ENST00000599848 HDGFP51858 240 aaKnown RBP27,29■■□□□ 1,96
UPF1-207ENST00000599848 ZBTB7CA1YPR0 619 aa27,28■■□□□ 1,96
UPF1-207ENST00000599848 CFAP53Q96M91 514 aa27,24■■□□□ 1,95
UPF1-207ENST00000599848 EIF5BO60841 1220 aaKnown RBP27,21■■□□□ 1,95
UPF1-207ENST00000599848 KDM2AQ9Y2K7 1162 aa27,17■■□□□ 1,94
UPF1-207ENST00000599848 CCDC180Q9P1Z9 1646 aa27,15■■□□□ 1,94
UPF1-207ENST00000599848 TRHP20396 242 aaPredicted RBP27,14■■□□□ 1,94
Retrieved 100 of 20,778 RNA–protein pairs in 10,7 ms