RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 DCAF8L2P0C7V8 631 aa35.64■■■■□ 3.3
UPF1-207ENST00000599848 FAM9AQ8IZU1 332 aaPredicted RBP33.19■■■□□ 2.9
UPF1-207ENST00000599848 NISCHQ9Y2I1 1504 aa33■■■□□ 2.87
UPF1-207ENST00000599848 SUPT5HO00267 1087 aaKnown RBP32.92■■■□□ 2.86
UPF1-207ENST00000599848 APLP2Q06481 763 aa32.58■■■□□ 2.81
UPF1-207ENST00000599848 PELP1Q8IZL8 1130 aaKnown RBP32.27■■■□□ 2.76
UPF1-207ENST00000599848 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
UPF1-207ENST00000599848 EHMT2Q96KQ7 1210 aa31.7■■■□□ 2.67
UPF1-207ENST00000599848 ATP1B4Q9UN42 357 aaPredicted RBP31.13■■■□□ 2.57
UPF1-207ENST00000599848 TRIM41Q8WV44 630 aa30.88■■■□□ 2.53
UPF1-207ENST00000599848 CCER1Q8TC90 406 aaPredicted RBP30.87■■■□□ 2.53
UPF1-207ENST00000599848 RANGAP1P46060 587 aaPredicted RBP30.82■■■□□ 2.52
UPF1-207ENST00000599848 UBTFP17480 764 aaKnown RBP30.76■■■□□ 2.51
UPF1-207ENST00000599848 TTBK1Q5TCY1 1321 aaPredicted RBP30.64■■■□□ 2.5
UPF1-207ENST00000599848 MYT1LQ9UL68 1186 aa30.63■■■□□ 2.49
UPF1-207ENST00000599848 ZEB1P37275 1124 aaPredicted RBP30.59■■■□□ 2.49
UPF1-207ENST00000599848 ERICH6Q7L0X2 663 aa30.48■■■□□ 2.47
UPF1-207ENST00000599848 PCGF6Q9BYE7 350 aa30.43■■■□□ 2.46
UPF1-207ENST00000599848 CENPBP07199 599 aaPredicted RBP30.39■■■□□ 2.46
UPF1-207ENST00000599848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.36■■■□□ 2.45
UPF1-207ENST00000599848 HNRNPUL2Q1KMD3 747 aaKnown RBP30.36■■■□□ 2.45
UPF1-207ENST00000599848 NEFLP07196 543 aa30.24■■■□□ 2.43
UPF1-207ENST00000599848 DAXXQ9UER7 740 aaPredicted RBP29.61■■■□□ 2.33
UPF1-207ENST00000599848 POLR3GLQ9BT43 218 aa29.57■■■□□ 2.32
UPF1-207ENST00000599848 SLC4A1APQ9BWU0 796 aaKnown RBP29.51■■■□□ 2.31
UPF1-207ENST00000599848 CHIC1Q5VXU3 224 aa29.49■■■□□ 2.31
UPF1-207ENST00000599848 ITGAEP38570 1179 aa29.47■■■□□ 2.31
UPF1-207ENST00000599848 TRIM26Q12899 539 aaPredicted RBP29.2■■■□□ 2.27
UPF1-207ENST00000599848 ABCC9O60706 1549 aa29.19■■■□□ 2.26
UPF1-207ENST00000599848 FBLN2P98095 1184 aa29.11■■■□□ 2.25
UPF1-207ENST00000599848 YTHDC1Q96MU7 727 aaKnown RBP29.11■■■□□ 2.25
UPF1-207ENST00000599848 PABPN1Q86U42 306 aaKnown RBP eCLIP29.09■■■□□ 2.25
UPF1-207ENST00000599848 TRIM52Q96A61 297 aa29.03■■■□□ 2.24
UPF1-207ENST00000599848 ESF1Q9H501 851 aaKnown RBP29.02■■■□□ 2.24
UPF1-207ENST00000599848 PPARGC1BQ86YN6 1023 aaKnown RBP29.01■■■□□ 2.23
UPF1-207ENST00000599848 FAM50AQ14320 339 aaKnown RBP28.98■■■□□ 2.23
UPF1-207ENST00000599848 ZBTB47Q9UFB7 747 aaPredicted RBP28.96■■■□□ 2.23
UPF1-207ENST00000599848 NEFMP07197 916 aa28.93■■■□□ 2.22
UPF1-207ENST00000599848 BCANQ96GW7 911 aa28.93■■■□□ 2.22
UPF1-207ENST00000599848 CLSPNQ9HAW4 1339 aa28.91■■■□□ 2.22
UPF1-207ENST00000599848 NPM1P06748 294 aaKnown RBP eCLIP28.85■■■□□ 2.21
UPF1-207ENST00000599848 CDK11AQ9UQ88 783 aaPredicted RBP28.84■■■□□ 2.21
UPF1-207ENST00000599848 CNGB1Q14028 1251 aaPredicted RBP28.77■■■□□ 2.2
UPF1-207ENST00000599848 MYT1Q01538 1121 aa28.77■■■□□ 2.2
UPF1-207ENST00000599848 ZNF316A6NFI3 1004 aaPredicted RBP28.73■■■□□ 2.19
UPF1-207ENST00000599848 SLC24A1O60721 1099 aa28.57■■■□□ 2.16
UPF1-207ENST00000599848 STAG3Q9UJ98 1225 aa28.52■■■□□ 2.16
UPF1-207ENST00000599848 ZNF326Q5BKZ1 582 aaKnown RBP28.5■■■□□ 2.15
UPF1-207ENST00000599848 RTL5Q5HYW3 569 aaPredicted RBP28.4■■■□□ 2.14
UPF1-207ENST00000599848 HRCP23327 699 aa28.38■■■□□ 2.13
UPF1-207ENST00000599848 CANXP27824 592 aaKnown RBP28.36■■■□□ 2.13
UPF1-207ENST00000599848 NEUROD1Q13562 356 aa28.35■■■□□ 2.13
UPF1-207ENST00000599848 LOC105371045A0A1W2PR82 267 aa28.33■■■□□ 2.13
UPF1-207ENST00000599848 ANP32CO43423 234 aa28.32■■■□□ 2.12
UPF1-207ENST00000599848 ZNF777Q9ULD5 760 aaPredicted RBP28.29■■■□□ 2.12
UPF1-207ENST00000599848 CHGAP10645 457 aaKnown RBP28.13■■■□□ 2.09
UPF1-207ENST00000599848 CSRNP3Q8WYN3 585 aa28.09■■■□□ 2.09
UPF1-207ENST00000599848 P3H3Q8IVL6 736 aa28.07■■■□□ 2.08
UPF1-207ENST00000599848 ARID3CA6NKF2 412 aa28.06■■■□□ 2.08
UPF1-207ENST00000599848 DIEXFQ68CQ4 756 aaKnown RBP27.99■■■□□ 2.07
UPF1-207ENST00000599848 PLPPR3Q6T4P5 718 aa27.98■■■□□ 2.07
UPF1-207ENST00000599848 NPM2Q86SE8 214 aaKnown RBP27.96■■■□□ 2.07
UPF1-207ENST00000599848 CHMP7Q8WUX9 453 aaPredicted RBP27.93■■■□□ 2.06
UPF1-207ENST00000599848 TSPY4P0CV99 314 aa27.91■■■□□ 2.06
UPF1-207ENST00000599848 TSPY10P0CW01 314 aa27.91■■■□□ 2.06
UPF1-207ENST00000599848 ACIN1Q9UKV3 1341 aaKnown RBP27.86■■■□□ 2.05
UPF1-207ENST00000599848 SCRIBQ14160 1630 aa27.83■■■□□ 2.05
UPF1-207ENST00000599848 BCL11AQ9H165 835 aa27.74■■■□□ 2.03
UPF1-207ENST00000599848 TONSLQ96HA7 1378 aa27.74■■■□□ 2.03
UPF1-207ENST00000599848 SCAF1Q9H7N4 1312 aaKnown RBP27.72■■■□□ 2.03
UPF1-207ENST00000599848 PPP1R15AO75807 674 aaPredicted RBP27.71■■■□□ 2.03
UPF1-207ENST00000599848 C14orf37Q86TY3 774 aa27.65■■■□□ 2.02
UPF1-207ENST00000599848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.63■■■□□ 2.019e-7■■■□□ 15.5
UPF1-207ENST00000599848 UPF2Q9HAU5 1272 aaKnown RBP27.62■■■□□ 2.01
UPF1-207ENST00000599848 HAP1P54257 671 aaPredicted RBP27.59■■■□□ 2.01
UPF1-207ENST00000599848 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.58■■■□□ 2
UPF1-207ENST00000599848 A0A0G2JS52 829 aa27.56■■■□□ 2
UPF1-207ENST00000599848 ANP32BQ92688 251 aaKnown RBP27.55■■■□□ 2
UPF1-207ENST00000599848 ARID4BQ4LE39 1312 aaPredicted RBP27.54■■■□□ 2
UPF1-207ENST00000599848 PLEKHD1A6NEE1 506 aa27.53■■■□□ 2
UPF1-207ENST00000599848 MTUS2Q5JR59 1369 aa27.53■■■□□ 2
UPF1-207ENST00000599848 HSP90AA1P07900 732 aaKnown RBP27.52■■■□□ 2
UPF1-207ENST00000599848 ANP32AP39687 249 aaKnown RBP27.47■■□□□ 1.99
UPF1-207ENST00000599848 WDR43Q15061 677 aaKnown RBP eCLIP27.47■■□□□ 1.99
UPF1-207ENST00000599848 RB1CC1Q8TDY2 1594 aa27.47■■□□□ 1.99
UPF1-207ENST00000599848 MYH16Q9H6N6 1097 aa27.42■■□□□ 1.98
UPF1-207ENST00000599848 CDK11BP21127 795 aaKnown RBP27.42■■□□□ 1.98
UPF1-207ENST00000599848 RSF1Q96T23 1441 aaPredicted RBP27.42■■□□□ 1.98
UPF1-207ENST00000599848 CDCA8Q53HL2 280 aa27.33■■□□□ 1.97
UPF1-207ENST00000599848 KCNH8Q96L42 1107 aa27.32■■□□□ 1.96
UPF1-207ENST00000599848 ERCC6Q03468 1493 aa27.31■■□□□ 1.96
UPF1-207ENST00000599848 TMC1Q8TDI8 760 aa27.3■■□□□ 1.96
UPF1-207ENST00000599848 CHIC2Q9UKJ5 165 aa27.29■■□□□ 1.96
UPF1-207ENST00000599848 HDGFP51858 240 aaKnown RBP27.29■■□□□ 1.96
UPF1-207ENST00000599848 ZBTB7CA1YPR0 619 aa27.28■■□□□ 1.96
UPF1-207ENST00000599848 CFAP53Q96M91 514 aa27.24■■□□□ 1.95
UPF1-207ENST00000599848 EIF5BO60841 1220 aaKnown RBP27.21■■□□□ 1.95
UPF1-207ENST00000599848 KDM2AQ9Y2K7 1162 aa27.17■■□□□ 1.94
UPF1-207ENST00000599848 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
UPF1-207ENST00000599848 TRHP20396 242 aaPredicted RBP27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms