Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC8.3□□□□□ -1.082e-6■■■■■ 37.1
DDX55Q8NHQ9 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.012e-9■■■■■ 36.9
DDX55Q8NHQ9 PID1-206ENST00000534952 553 ntTSL 417.05■□□□□ 0.321e-7■■■■■ 36.9
DDX55Q8NHQ9 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.35□□□□□ -0.111e-7■■■■■ 36.9
DDX55Q8NHQ9 PID1-203ENST00000392055 2533 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.131e-7■■■■■ 36.9
DDX55Q8NHQ9 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC13.69□□□□□ -0.221e-7■■■■■ 36.9
DDX55Q8NHQ9 PID1-201ENST00000354069 839 ntTSL 3 BASIC10□□□□□ -0.811e-7■■■■■ 36.9
DDX55Q8NHQ9 PID1-205ENST00000482518 479 ntTSL 27.15□□□□□ -1.261e-7■■■■■ 36.9
DDX55Q8NHQ9 ELP5-215ENST00000576496 937 ntAPPRIS ALT2 TSL 1 (best)22.97■■□□□ 1.276e-8■■■■■ 36.7
DDX55Q8NHQ9 DCAF15-205ENST00000591385 431 ntTSL 217.46■□□□□ 0.396e-8■■■■■ 36.7
DDX55Q8NHQ9 DCAF15-203ENST00000587307 711 ntTSL 216.51■□□□□ 0.236e-8■■■■■ 36.7
DDX55Q8NHQ9 ELP5-207ENST00000571146 890 ntTSL 316.37■□□□□ 0.216e-8■■■■■ 36.7
DDX55Q8NHQ9 MED12-203ENST00000374102 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.56e-8■■■■■ 36.7
DDX55Q8NHQ9 BBS4-202ENST00000395205 2450 ntTSL 1 (best) BASIC11.37□□□□□ -0.596e-8■■■■■ 36.7
DDX55Q8NHQ9 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.666e-8■■■■■ 36.7
DDX55Q8NHQ9 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.826e-8■■■■■ 36.7
DDX55Q8NHQ9 BBS4-201ENST00000268057 2490 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.016e-8■■■■■ 36.7
DDX55Q8NHQ9 CUX1-209ENST00000487284 1566 ntTSL 216.42■□□□□ 0.226e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC12.52□□□□□ -0.416e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC12.09□□□□□ -0.476e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC11.73□□□□□ -0.536e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-218ENST00000560541 3176 ntTSL 511.58□□□□□ -0.566e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-217ENST00000558836 2965 ntTSL 511.51□□□□□ -0.576e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC11.51□□□□□ -0.576e-12■■■■■ 36.6
DDX55Q8NHQ9 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC10.36□□□□□ -0.756e-12■■■■■ 36.6
DDX55Q8NHQ9 LAMTOR4-204ENST00000466498 371 ntTSL 218.49■□□□□ 0.555e-10■■■■■ 36.3
DDX55Q8NHQ9 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC15.96■□□□□ 0.155e-8■■■■■ 36.3
DDX55Q8NHQ9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.377e-11■■■■■ 36.1
DDX55Q8NHQ9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC23.42■■□□□ 1.341e-7■■■■■ 36.1
DDX55Q8NHQ9 TMED3-204ENST00000543455 1483 ntTSL 222.95■■□□□ 1.267e-11■■■■■ 36.1
DDX55Q8NHQ9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 17e-11■■■■■ 36.1
DDX55Q8NHQ9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.777e-11■■■■■ 36.1
DDX55Q8NHQ9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.9■□□□□ 0.627e-11■■■■■ 36.1
DDX55Q8NHQ9 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.247e-11■■■■■ 36.1
DDX55Q8NHQ9 TMED3-205ENST00000558562 938 ntTSL 216.51■□□□□ 0.237e-11■■■■■ 36.1
DDX55Q8NHQ9 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.061e-7■■■■■ 36.1
DDX55Q8NHQ9 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.27e-11■■■■■ 36.1
DDX55Q8NHQ9 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC7.12□□□□□ -1.277e-11■■■■■ 36.1
DDX55Q8NHQ9 SCAMP5-205ENST00000562765 1206 ntTSL 224.61■■□□□ 1.531e-6■■■■■ 36
DDX55Q8NHQ9 SCAMP5-218ENST00000568423 1142 ntTSL 321.8■■□□□ 1.081e-6■■■■■ 36
DDX55Q8NHQ9 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC14.22□□□□□ -0.131e-6■■■■■ 36
DDX55Q8NHQ9 SCAMP5-212ENST00000567529 966 ntTSL 213.31□□□□□ -0.281e-6■■■■■ 36
DDX55Q8NHQ9 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.84□□□□□ -1.481e-6■■■■■ 36
DDX55Q8NHQ9 SLC4A7-202ENST00000419036 6447 ntTSL 1 (best)4.45□□□□□ -1.71e-6■■■■■ 36
DDX55Q8NHQ9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.971e-6■■■■■ 36
DDX55Q8NHQ9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.12■□□□□ 0.331e-8■■■■■ 36
DDX55Q8NHQ9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.775e-8■■■■■ 35.9
DDX55Q8NHQ9 IMPA2-210ENST00000590107 1616 ntTSL 524.67■■□□□ 1.545e-8■■■■■ 35.9
DDX55Q8NHQ9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.225e-15■■■■■ 35.9
DDX55Q8NHQ9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.92■□□□□ 0.945e-15■■■■■ 35.9
DDX55Q8NHQ9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.79■□□□□ 0.925e-15■■■■■ 35.9
DDX55Q8NHQ9 IMPA2-209ENST00000589374 919 ntTSL 219.19■□□□□ 0.665e-8■■■■■ 35.9
DDX55Q8NHQ9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.335e-15■■■■■ 35.9
DDX55Q8NHQ9 EMG1-203ENST00000611981 1223 ntTSL 215.75■□□□□ 0.115e-8■■■■■ 35.9
DDX55Q8NHQ9 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.97□□□□□ -0.015e-8■■■■■ 35.9
DDX55Q8NHQ9 EMG1-206ENST00000607161 1087 ntAPPRIS P5 TSL 2 BASIC14.42□□□□□ -0.15e-8■■■■■ 35.9
DDX55Q8NHQ9 EMG1-205ENST00000261406 958 ntAPPRIS ALT2 TSL 513.45□□□□□ -0.265e-8■■■■■ 35.9
DDX55Q8NHQ9 EMG1-202ENST00000599672 4898 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.325e-8■■■■■ 35.9
DDX55Q8NHQ9 COIL-201ENST00000240316 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.385e-8■■■■■ 35.9
DDX55Q8NHQ9 CPT1A-201ENST00000265641 5232 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.455e-8■■■■■ 35.9
DDX55Q8NHQ9 CPT1A-206ENST00000540367 2496 ntTSL 1 (best) BASIC11.68□□□□□ -0.545e-8■■■■■ 35.9
DDX55Q8NHQ9 EMG1-201ENST00000539196 616 ntTSL 26.68□□□□□ -1.345e-8■■■■■ 35.9
DDX55Q8NHQ9 DKK1-204ENST00000494277 465 ntTSL 54.55□□□□□ -1.684e-7■■■■■ 35.7
DDX55Q8NHQ9 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.111e-6■■■■■ 35.4
DDX55Q8NHQ9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.192e-7■■■■■ 35.3
DDX55Q8NHQ9 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.12■□□□□ 0.172e-7■■■■■ 35.3
DDX55Q8NHQ9 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.93■□□□□ 0.142e-7■■■■■ 35.3
DDX55Q8NHQ9 NPM3-204ENST00000474993 755 ntTSL 224.15■■□□□ 1.462e-15■■■■■ 35
DDX55Q8NHQ9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.282e-15■■■■■ 35
DDX55Q8NHQ9 DGCR2-203ENST00000467659 2459 ntTSL 518.22■□□□□ 0.512e-6■■■■■ 35
DDX55Q8NHQ9 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.922e-7■■■■■ 34.4
DDX55Q8NHQ9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.642e-7■■■■■ 34.4
DDX55Q8NHQ9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.16■■□□□ 1.622e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.593e-35■■■■■ 34.4
DDX55Q8NHQ9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.462e-7■■■■■ 34.4
DDX55Q8NHQ9 PREB-206ENST00000444452 2030 ntTSL 1 (best)24.08■■□□□ 1.452e-7■■■■■ 34.4
DDX55Q8NHQ9 PICK1-214ENST00000484021 2531 ntTSL 223.6■■□□□ 1.372e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.233e-35■■■■■ 34.4
DDX55Q8NHQ9 IMPDH2-206ENST00000466147 691 ntTSL 221.65■■□□□ 1.062e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-209ENST00000557535 927 ntTSL 521.22■□□□□ 0.993e-35■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.923e-35■■■■■ 34.4
DDX55Q8NHQ9 IMPDH2-208ENST00000481274 840 ntTSL 219.36■□□□□ 0.692e-7■■■■■ 34.4
DDX55Q8NHQ9 PREB-208ENST00000468045 3057 ntTSL 218.55■□□□□ 0.562e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-208ENST00000556729 5318 ntTSL 217.67■□□□□ 0.423e-35■■■■■ 34.4
DDX55Q8NHQ9 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.92■□□□□ 0.32e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)15.54■□□□□ 0.083e-35■■■■■ 34.4
DDX55Q8NHQ9 NHP2-201ENST00000274606 865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.042e-7■■■■■ 34.4
DDX55Q8NHQ9 IMPDH2-202ENST00000429182 1469 ntTSL 515.2■□□□□ 0.022e-7■■■■■ 34.4
DDX55Q8NHQ9 BLM-210ENST00000560821 1024 ntTSL 215.04■□□□□ -02e-7■■■■■ 34.4
DDX55Q8NHQ9 DHRS2-206ENST00000556550 2595 nt14.94□□□□□ -0.023e-35■■■■■ 34.4
DDX55Q8NHQ9 PREB-207ENST00000456259 1105 ntTSL 214.23□□□□□ -0.132e-7■■■■■ 34.4
DDX55Q8NHQ9 IMPDH2-201ENST00000326739 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.282e-7■■■■■ 34.4
DDX55Q8NHQ9 BLM-203ENST00000558825 1683 ntTSL 510.93□□□□□ -0.662e-7■■■■■ 34.4
DDX55Q8NHQ9 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.722e-7■■■■■ 34.4
DDX55Q8NHQ9 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.752e-7■■■■■ 34.4
DDX55Q8NHQ9 NSUN4-201ENST00000307089 4344 ntTSL 1 (best)9.42□□□□□ -0.92e-7■■■■■ 34.4
DDX55Q8NHQ9 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.272e-7■■■■■ 34.4
DDX55Q8NHQ9 IMPDH2-209ENST00000484872 643 ntTSL 26.84□□□□□ -1.312e-7■■■■■ 34.4
DDX55Q8NHQ9 BLM-206ENST00000559724 4510 ntTSL 1 (best)5.76□□□□□ -1.492e-7■■■■■ 34.4
DDX55Q8NHQ9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.72□□□□□ -1.812e-7■■■■■ 34.4
Retrieved 100 of 15,504 protein–RNA pairs in 388.3 ms