RNA–Protein interactions for RNA: ENST00000376618.6

CPT1A-202, Transcript of carnitine palmitoyltransferase 1A, humanhuman

TSL 1 (best) BASIC

Gene CPT1A, Length 2,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPT1A-202ENST00000376618 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
CPT1A-202ENST00000376618 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
CPT1A-202ENST00000376618 DCAF8L2P0C7V8 631 aa25.11■■□□□ 1.61
CPT1A-202ENST00000376618 SUPT5HO00267 1087 aaKnown RBP24.91■■□□□ 1.58
CPT1A-202ENST00000376618 CCDC180Q9P1Z9 1646 aa24.78■■□□□ 1.56
CPT1A-202ENST00000376618 ZCCHC6Q5VYS8 1495 aaKnown RBP24.76■■□□□ 1.55
CPT1A-202ENST00000376618 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
CPT1A-202ENST00000376618 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
CPT1A-202ENST00000376618 MYO15BQ96JP2 1530 aa23.8■■□□□ 1.4
CPT1A-202ENST00000376618 ABCC9O60706 1549 aa23.73■■□□□ 1.39
CPT1A-202ENST00000376618 SCRIBQ14160 1630 aa23.67■■□□□ 1.38
CPT1A-202ENST00000376618 LOC105371045A0A1W2PR82 267 aa23.45■■□□□ 1.34
CPT1A-202ENST00000376618 RSF1Q96T23 1441 aaPredicted RBP23.31■■□□□ 1.32
CPT1A-202ENST00000376618 CECR2Q9BXF3 1484 aa23.21■■□□□ 1.31
CPT1A-202ENST00000376618 EHMT2Q96KQ7 1210 aa23.2■■□□□ 1.3
CPT1A-202ENST00000376618 PCGF6Q9BYE7 350 aa23.14■■□□□ 1.29
CPT1A-202ENST00000376618 FAM9AQ8IZU1 332 aaPredicted RBP23.13■■□□□ 1.29
CPT1A-202ENST00000376618 RB1CC1Q8TDY2 1594 aa23.08■■□□□ 1.28
CPT1A-202ENST00000376618 NACADO15069 1562 aa23.06■■□□□ 1.28
CPT1A-202ENST00000376618 TRIM41Q8WV44 630 aa23■■□□□ 1.27
CPT1A-202ENST00000376618 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
CPT1A-202ENST00000376618 WIZO95785 1651 aa22.88■■□□□ 1.25
CPT1A-202ENST00000376618 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.255e-6■■■■□ 22.2
CPT1A-202ENST00000376618 HRCP23327 699 aa22.73■■□□□ 1.23
CPT1A-202ENST00000376618 PPARGC1BQ86YN6 1023 aaKnown RBP22.72■■□□□ 1.23
CPT1A-202ENST00000376618 UNC13AQ9UPW8 1703 aa22.58■■□□□ 1.2
CPT1A-202ENST00000376618 BAZ1AQ9NRL2 1556 aaPredicted RBP22.51■■□□□ 1.19
CPT1A-202ENST00000376618 TRIM26Q12899 539 aaPredicted RBP22.44■■□□□ 1.18
CPT1A-202ENST00000376618 ABCC8Q09428 1581 aa22.41■■□□□ 1.18
CPT1A-202ENST00000376618 SMARCA4P51532 1647 aa22.4■■□□□ 1.18
CPT1A-202ENST00000376618 CCDC88BA6NC98 1476 aa22.4■■□□□ 1.18
CPT1A-202ENST00000376618 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.16
CPT1A-202ENST00000376618 TTBK1Q5TCY1 1321 aaPredicted RBP22.32■■□□□ 1.16
CPT1A-202ENST00000376618 TOP2AP11388 1531 aaKnown RBP22.28■■□□□ 1.16
CPT1A-202ENST00000376618 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
CPT1A-202ENST00000376618 EIF4G1Q04637 1599 aaKnown RBP22.23■■□□□ 1.15
CPT1A-202ENST00000376618 SOGA1O94964 1423 aa22.18■■□□□ 1.14
CPT1A-202ENST00000376618 RUSC2Q8N2Y8 1516 aa22.14■■□□□ 1.13
CPT1A-202ENST00000376618 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
CPT1A-202ENST00000376618 RANGAP1P46060 587 aaPredicted RBP21.99■■□□□ 1.11
CPT1A-202ENST00000376618 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.11
CPT1A-202ENST00000376618 CSRNP3Q8WYN3 585 aa21.94■■□□□ 1.1
CPT1A-202ENST00000376618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.92■■□□□ 1.1
CPT1A-202ENST00000376618 BAZ1BQ9UIG0 1483 aaKnown RBP21.89■■□□□ 1.09
CPT1A-202ENST00000376618 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.092e-10■■■■■ 91.9
CPT1A-202ENST00000376618 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
CPT1A-202ENST00000376618 SYNJ1O43426 1573 aa21.8■■□□□ 1.08
CPT1A-202ENST00000376618 PEG3Q9GZU2 1588 aa21.79■■□□□ 1.08
CPT1A-202ENST00000376618 TNIKQ9UKE5 1360 aa21.7■■□□□ 1.06
CPT1A-202ENST00000376618 CCER1Q8TC90 406 aaPredicted RBP21.69■■□□□ 1.06
CPT1A-202ENST00000376618 ZEB1P37275 1124 aaPredicted RBP21.61■■□□□ 1.05
CPT1A-202ENST00000376618 GOLGA3Q08378 1498 aa21.59■■□□□ 1.05
CPT1A-202ENST00000376618 RAPGEF2Q9Y4G8 1499 aa21.57■■□□□ 1.04
CPT1A-202ENST00000376618 EEA1Q15075 1411 aa21.55■■□□□ 1.04
CPT1A-202ENST00000376618 HNRNPUL2Q1KMD3 747 aaKnown RBP21.52■■□□□ 1.04
CPT1A-202ENST00000376618 CLIP1P30622 1438 aa21.46■■□□□ 1.03
CPT1A-202ENST00000376618 CEP164Q9UPV0 1460 aa21.46■■□□□ 1.03
CPT1A-202ENST00000376618 NCAPD3P42695 1498 aa21.45■■□□□ 1.02
CPT1A-202ENST00000376618 TOP2BQ02880 1626 aa21.39■■□□□ 1.01
CPT1A-202ENST00000376618 CUX1P39880 1505 aa21.37■■□□□ 1.01
CPT1A-202ENST00000376618 KIF21BO75037 1637 aa21.33■■□□□ 1.01
CPT1A-202ENST00000376618 APLP2Q06481 763 aa21.32■■□□□ 1
CPT1A-202ENST00000376618 HMGXB3Q12766 1538 aa21.31■■□□□ 1
CPT1A-202ENST00000376618 AEBP2Q6ZN18 517 aaPredicted RBP21.29■■□□□ 1
CPT1A-202ENST00000376618 CFTRP13569 1480 aa21.28■■□□□ 1
CPT1A-202ENST00000376618 KANK4Q5T7N3 995 aaPredicted RBP21.26■□□□□ 0.99
CPT1A-202ENST00000376618 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
CPT1A-202ENST00000376618 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
CPT1A-202ENST00000376618 BIVM-ERCC5R4GMW8 1640 aa21.24■□□□□ 0.99
CPT1A-202ENST00000376618 PRXQ9BXM0 1461 aa21.19■□□□□ 0.98
CPT1A-202ENST00000376618 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
CPT1A-202ENST00000376618 KIF27Q86VH2 1401 aa21.16■□□□□ 0.98
CPT1A-202ENST00000376618 P3H3Q8IVL6 736 aa21.15■□□□□ 0.98
CPT1A-202ENST00000376618 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
CPT1A-202ENST00000376618 CUX2O14529 1486 aa21.13■□□□□ 0.97
CPT1A-202ENST00000376618 ARAP1Q96P48 1450 aa21.13■□□□□ 0.97
CPT1A-202ENST00000376618 ITGAEP38570 1179 aa21.13■□□□□ 0.97
CPT1A-202ENST00000376618 NESP48681 1621 aa21.11■□□□□ 0.97
CPT1A-202ENST00000376618 DIEXFQ68CQ4 756 aaKnown RBP21.09■□□□□ 0.97
CPT1A-202ENST00000376618 IGF1RP08069 1367 aa21.07■□□□□ 0.96
CPT1A-202ENST00000376618 ATP1B4Q9UN42 357 aaPredicted RBP21.05■□□□□ 0.96
CPT1A-202ENST00000376618 FGD5Q6ZNL6 1462 aa21.04■□□□□ 0.96
CPT1A-202ENST00000376618 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
CPT1A-202ENST00000376618 ERICH3Q5RHP9 1530 aa21■□□□□ 0.95
CPT1A-202ENST00000376618 ARHGAP35Q9NRY4 1499 aa20.98■□□□□ 0.95
CPT1A-202ENST00000376618 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
CPT1A-202ENST00000376618 FANCD2Q9BXW9 1451 aa20.97■□□□□ 0.95
CPT1A-202ENST00000376618 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
CPT1A-202ENST00000376618 ZNF316A6NFI3 1004 aaPredicted RBP20.9■□□□□ 0.94
CPT1A-202ENST00000376618 NEUROD1Q13562 356 aa20.88■□□□□ 0.93
CPT1A-202ENST00000376618 YTHDC1Q96MU7 727 aaKnown RBP20.87■□□□□ 0.93
CPT1A-202ENST00000376618 PRDM2Q13029 1718 aa20.84■□□□□ 0.93
CPT1A-202ENST00000376618 TDRD9Q8NDG6 1382 aaKnown RBP20.83■□□□□ 0.92
CPT1A-202ENST00000376618 POLA1P09884 1462 aaPredicted RBP20.81■□□□□ 0.92
CPT1A-202ENST00000376618 TOPBP1Q92547 1522 aa20.78■□□□□ 0.92
CPT1A-202ENST00000376618 FAM50AQ14320 339 aaKnown RBP20.77■□□□□ 0.92
CPT1A-202ENST00000376618 MIER1Q8N108 512 aa20.77■□□□□ 0.92
CPT1A-202ENST00000376618 FHOD3Q2V2M9 1422 aa20.77■□□□□ 0.92
CPT1A-202ENST00000376618 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
CPT1A-202ENST00000376618 CCNB3Q8WWL7 1395 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms