RNA–Protein interactions for RNA: ENST00000543455.1

TMED3-204, Transcript of transmembrane p24 trafficking protein 3, humanhuman

TSL 2

Gene TMED3, Length 1,483 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED3-204ENST00000543455 NISCHQ9Y2I1 1504 aa46.14■■■■■ 4.98
TMED3-204ENST00000543455 CCDC180Q9P1Z9 1646 aa41.19■■■■■ 4.18
TMED3-204ENST00000543455 ABCC9O60706 1549 aa40.69■■■■■ 4.1
TMED3-204ENST00000543455 RB1CC1Q8TDY2 1594 aa38.92■■■■□ 3.82
TMED3-204ENST00000543455 NACADO15069 1562 aa38.79■■■■□ 3.8
TMED3-204ENST00000543455 DCAF8L2P0C7V8 631 aa38.58■■■■□ 3.77
TMED3-204ENST00000543455 MYO15BQ96JP2 1530 aa38.45■■■■□ 3.75
TMED3-204ENST00000543455 ZCCHC6Q5VYS8 1495 aaKnown RBP38.38■■■■□ 3.73
TMED3-204ENST00000543455 UNC13AQ9UPW8 1703 aa38.17■■■■□ 3.7
TMED3-204ENST00000543455 DCAF1Q9Y4B6 1507 aa38.14■■■■□ 3.7
TMED3-204ENST00000543455 PABPN1Q86U42 306 aaKnown RBP eCLIP37.94■■■■□ 3.66
TMED3-204ENST00000543455 BICRAQ9NZM4 1560 aa37.88■■■■□ 3.66
TMED3-204ENST00000543455 DNAJC5BQ9UF47 199 aa37.78■■■■□ 3.64
TMED3-204ENST00000543455 SCRIBQ14160 1630 aa37.57■■■■□ 3.61
TMED3-204ENST00000543455 SHROOM4Q9ULL8 1493 aa37.32■■■■□ 3.56
TMED3-204ENST00000543455 EIF4G1Q04637 1599 aaKnown RBP36.85■■■■□ 3.49
TMED3-204ENST00000543455 CC2D2AQ9P2K1 1620 aa36.81■■■■□ 3.48
TMED3-204ENST00000543455 CECR2Q9BXF3 1484 aa36.58■■■■□ 3.45
TMED3-204ENST00000543455 SMARCA4P51532 1647 aa35.91■■■■□ 3.34
TMED3-204ENST00000543455 NCAPD3P42695 1498 aa35.82■■■■□ 3.32
TMED3-204ENST00000543455 ATAD2BQ9ULI0 1458 aa35.8■■■■□ 3.32
TMED3-204ENST00000543455 BAZ1AQ9NRL2 1556 aaPredicted RBP35.75■■■■□ 3.31
TMED3-204ENST00000543455 SMARCA2P51531 1590 aa35.68■■■■□ 3.3
TMED3-204ENST00000543455 HMGXB3Q12766 1538 aa35.61■■■■□ 3.29
TMED3-204ENST00000543455 MROH2BQ7Z745 1585 aa35.59■■■■□ 3.29
TMED3-204ENST00000543455 PEG3Q9GZU2 1588 aa35.56■■■■□ 3.28
TMED3-204ENST00000543455 BAZ1BQ9UIG0 1483 aaKnown RBP35.43■■■■□ 3.26
TMED3-204ENST00000543455 WIZO95785 1651 aa35.2■■■■□ 3.22
TMED3-204ENST00000543455 NESP48681 1621 aa35.15■■■■□ 3.22
TMED3-204ENST00000543455 ERCC6Q03468 1493 aa35.01■■■■□ 3.2
TMED3-204ENST00000543455 RSF1Q96T23 1441 aaPredicted RBP35.01■■■■□ 3.2
TMED3-204ENST00000543455 LAMC3Q9Y6N6 1575 aa34.92■■■■□ 3.18
TMED3-204ENST00000543455 CUX2O14529 1486 aa34.83■■■■□ 3.17
TMED3-204ENST00000543455 TOP2AP11388 1531 aaKnown RBP34.75■■■■□ 3.15
TMED3-204ENST00000543455 CADPSQ9ULU8 1353 aa34.73■■■■□ 3.15
TMED3-204ENST00000543455 KIF21AQ7Z4S6 1674 aa34.72■■■■□ 3.15
TMED3-204ENST00000543455 THOC2Q8NI27 1593 aaKnown RBP34.7■■■■□ 3.15
TMED3-204ENST00000543455 PDS5BQ9NTI5 1447 aa34.65■■■■□ 3.14
TMED3-204ENST00000543455 CFTRP13569 1480 aa34.48■■■■□ 3.11
TMED3-204ENST00000543455 MRC2Q9UBG0 1479 aa34.37■■■■□ 3.09
TMED3-204ENST00000543455 CCDC88BA6NC98 1476 aa34.36■■■■□ 3.09
TMED3-204ENST00000543455 FANCD2Q9BXW9 1451 aa34.34■■■■□ 3.09
TMED3-204ENST00000543455 CEP164Q9UPV0 1460 aa34.32■■■■□ 3.08
TMED3-204ENST00000543455 WDR62O43379 1518 aa34.3■■■■□ 3.08
TMED3-204ENST00000543455 DNAJC5Q9H3Z4 198 aa34.24■■■■□ 3.07
TMED3-204ENST00000543455 PRDM2Q13029 1718 aa34.21■■■■□ 3.07
TMED3-204ENST00000543455 URB2Q14146 1524 aaKnown RBP34.08■■■■□ 3.05
TMED3-204ENST00000543455 TOPBP1Q92547 1522 aa33.78■■■■□ 3
TMED3-204ENST00000543455 SUPT5HO00267 1087 aaKnown RBP33.74■■■□□ 2.99
TMED3-204ENST00000543455 DNMBPQ6XZF7 1577 aa33.69■■■□□ 2.98
TMED3-204ENST00000543455 ABCC8Q09428 1581 aa33.65■■■□□ 2.98
TMED3-204ENST00000543455 IFT140Q96RY7 1462 aa33.61■■■□□ 2.97
TMED3-204ENST00000543455 ZNF608Q9ULD9 1512 aaPredicted RBP33.58■■■□□ 2.97
TMED3-204ENST00000543455 TARBP1Q13395 1621 aaKnown RBP33.48■■■□□ 2.95
TMED3-204ENST00000543455 POLA1P09884 1462 aaPredicted RBP33.47■■■□□ 2.95
TMED3-204ENST00000543455 CUX1P39880 1505 aa33.41■■■□□ 2.94
TMED3-204ENST00000543455 EIF4G3O43432 1585 aaKnown RBP33.41■■■□□ 2.94
TMED3-204ENST00000543455 RAD54L2Q9Y4B4 1467 aa33.34■■■□□ 2.93
TMED3-204ENST00000543455 FGD5Q6ZNL6 1462 aa33.33■■■□□ 2.93
TMED3-204ENST00000543455 AQRO60306 1485 aaKnown RBP eCLIP33.3■■■□□ 2.92
TMED3-204ENST00000543455 SOGA1O94964 1423 aa33.27■■■□□ 2.92
TMED3-204ENST00000543455 OSCARQ8IYS5 282 aa33.26■■■□□ 2.92
TMED3-204ENST00000543455 TDRD9Q8NDG6 1382 aaKnown RBP33.16■■■□□ 2.9
TMED3-204ENST00000543455 WDR97A6NE52 1622 aa33.12■■■□□ 2.89
TMED3-204ENST00000543455 CHD1O14646 1710 aa33.08■■■□□ 2.89
TMED3-204ENST00000543455 BIVM-ERCC5R4GMW8 1640 aa33■■■□□ 2.87
TMED3-204ENST00000543455 SYNJ1O43426 1573 aa33■■■□□ 2.87
TMED3-204ENST00000543455 TOP2BQ02880 1626 aa32.99■■■□□ 2.87
TMED3-204ENST00000543455 SNAPC4Q5SXM2 1469 aa32.98■■■□□ 2.87
TMED3-204ENST00000543455 ABCA10Q8WWZ4 1543 aa32.98■■■□□ 2.87
TMED3-204ENST00000543455 WRNQ14191 1432 aaPredicted RBP eCLIP32.97■■■□□ 2.87
TMED3-204ENST00000543455 GRIN2BQ13224 1484 aa32.93■■■□□ 2.86
TMED3-204ENST00000543455 ABCA5Q8WWZ7 1642 aa32.91■■■□□ 2.86
TMED3-204ENST00000543455 PBRM1Q86U86 1689 aa32.9■■■□□ 2.86
TMED3-204ENST00000543455 GAPVD1Q14C86 1478 aa32.89■■■□□ 2.86
TMED3-204ENST00000543455 TRIM41Q8WV44 630 aa32.89■■■□□ 2.86
TMED3-204ENST00000543455 RIMBP3CA6NJZ7 1639 aa32.89■■■□□ 2.86
TMED3-204ENST00000543455 RIMBP3BA6NNM3 1639 aa32.89■■■□□ 2.86
TMED3-204ENST00000543455 RIMBP3Q9UFD9 1639 aa32.89■■■□□ 2.86
TMED3-204ENST00000543455 MAGI1Q96QZ7 1491 aaPredicted RBP32.88■■■□□ 2.85
TMED3-204ENST00000543455 FBLN2P98095 1184 aa32.87■■■□□ 2.85
TMED3-204ENST00000543455 ARHGEF11O15085 1522 aa32.82■■■□□ 2.84
TMED3-204ENST00000543455 SYNJ2O15056 1496 aa32.77■■■□□ 2.84
TMED3-204ENST00000543455 CHMP7Q8WUX9 453 aaPredicted RBP32.72■■■□□ 2.83
TMED3-204ENST00000543455 CLASP1Q7Z460 1538 aa32.72■■■□□ 2.83
TMED3-204ENST00000543455 ADAMTS12P58397 1594 aa32.62■■■□□ 2.81
TMED3-204ENST00000543455 ARAP1Q96P48 1450 aa32.56■■■□□ 2.8
TMED3-204ENST00000543455 ERICH3Q5RHP9 1530 aa32.55■■■□□ 2.8
TMED3-204ENST00000543455 GRIN2AQ12879 1464 aa32.53■■■□□ 2.8
TMED3-204ENST00000543455 FHAD1B1AJZ9 1412 aa32.48■■■□□ 2.79
TMED3-204ENST00000543455 CYB5RLQ6IPT4 315 aa32.47■■■□□ 2.79
TMED3-204ENST00000543455 CEP170Q5SW79 1584 aa32.44■■■□□ 2.78
TMED3-204ENST00000543455 NUP160Q12769 1436 aa32.43■■■□□ 2.78
TMED3-204ENST00000543455 ERCC6L2Q5T890 1561 aa32.28■■■□□ 2.76
TMED3-204ENST00000543455 KIF27Q86VH2 1401 aa32.27■■■□□ 2.76
TMED3-204ENST00000543455 IGF1RP08069 1367 aa32.27■■■□□ 2.76
TMED3-204ENST00000543455 SHROOM2Q13796 1616 aa32.26■■■□□ 2.75
TMED3-204ENST00000543455 CUL7Q14999 1698 aa32.18■■■□□ 2.74
TMED3-204ENST00000543455 RUSC2Q8N2Y8 1516 aa32.15■■■□□ 2.74
TMED3-204ENST00000543455 CARMIL1Q5VZK9 1371 aa32.03■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms