RNA–Protein interactions for RNA: ENST00000260643.6

PREB-201, Transcript of prolactin regulatory element binding, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PREB, Length 2,166 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PREB-201ENST00000260643 NISCHQ9Y2I1 1504 aa47.12■■■■■ 5.13
PREB-201ENST00000260643 SHROOM4Q9ULL8 1493 aa40.21■■■■■ 4.03
PREB-201ENST00000260643 ZCCHC6Q5VYS8 1495 aaKnown RBP40.01■■■■■ 4
PREB-201ENST00000260643 CCDC180Q9P1Z9 1646 aa39.88■■■■□ 3.97
PREB-201ENST00000260643 SUPT5HO00267 1087 aaKnown RBP39.73■■■■□ 3.95
PREB-201ENST00000260643 CHIC1Q5VXU3 224 aa39.12■■■■□ 3.85
PREB-201ENST00000260643 MYO15BQ96JP2 1530 aa39.09■■■■□ 3.85
PREB-201ENST00000260643 HRCP23327 699 aa38.93■■■■□ 3.82
PREB-201ENST00000260643 DCAF1Q9Y4B6 1507 aa38.83■■■■□ 3.81
PREB-201ENST00000260643 DCAF8L2P0C7V8 631 aa38.46■■■■□ 3.75
PREB-201ENST00000260643 PCGF6Q9BYE7 350 aa38.33■■■■□ 3.73
PREB-201ENST00000260643 ABCC9O60706 1549 aa37.85■■■■□ 3.65
PREB-201ENST00000260643 LOC105371045A0A1W2PR82 267 aa37.82■■■■□ 3.65
PREB-201ENST00000260643 PPARGC1BQ86YN6 1023 aaKnown RBP37.78■■■■□ 3.64
PREB-201ENST00000260643 TRIM26Q12899 539 aaPredicted RBP37.66■■■■□ 3.62
PREB-201ENST00000260643 RSF1Q96T23 1441 aaPredicted RBP37.47■■■■□ 3.59
PREB-201ENST00000260643 SCRIBQ14160 1630 aa37.23■■■■□ 3.55
PREB-201ENST00000260643 RB1CC1Q8TDY2 1594 aa37.21■■■■□ 3.55
PREB-201ENST00000260643 ZEB1P37275 1124 aaPredicted RBP37.19■■■■□ 3.54
PREB-201ENST00000260643 TRIM41Q8WV44 630 aa37.09■■■■□ 3.53
PREB-201ENST00000260643 NACADO15069 1562 aa36.71■■■■□ 3.47
PREB-201ENST00000260643 FAM9AQ8IZU1 332 aaPredicted RBP36.62■■■■□ 3.45
PREB-201ENST00000260643 CECR2Q9BXF3 1484 aa36.6■■■■□ 3.45
PREB-201ENST00000260643 MROH2BQ7Z745 1585 aa36.58■■■■□ 3.45
PREB-201ENST00000260643 WIZO95785 1651 aa36.38■■■■□ 3.41
PREB-201ENST00000260643 BAZ1AQ9NRL2 1556 aaPredicted RBP36.34■■■■□ 3.41
PREB-201ENST00000260643 EIF4G1Q04637 1599 aaKnown RBP36.33■■■■□ 3.41
PREB-201ENST00000260643 PELP1Q8IZL8 1130 aaKnown RBP36.32■■■■□ 3.4
PREB-201ENST00000260643 SCAF1Q9H7N4 1312 aaKnown RBP36.14■■■■□ 3.38
PREB-201ENST00000260643 EHMT2Q96KQ7 1210 aa36.12■■■■□ 3.37
PREB-201ENST00000260643 WRNQ14191 1432 aaPredicted RBP eCLIP35.99■■■■□ 3.35
PREB-201ENST00000260643 TOP2AP11388 1531 aaKnown RBP35.94■■■■□ 3.34
PREB-201ENST00000260643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.85■■■■□ 3.33
PREB-201ENST00000260643 CCER1Q8TC90 406 aaPredicted RBP35.84■■■■□ 3.33
PREB-201ENST00000260643 CCDC88BA6NC98 1476 aa35.76■■■■□ 3.32
PREB-201ENST00000260643 SMARCA4P51532 1647 aa35.74■■■■□ 3.31
PREB-201ENST00000260643 SMARCA2P51531 1590 aa35.73■■■■□ 3.31
PREB-201ENST00000260643 ABCC8Q09428 1581 aa35.72■■■■□ 3.31
PREB-201ENST00000260643 CEP162Q5TB80 1403 aa35.7■■■■□ 3.31
PREB-201ENST00000260643 TNIKQ9UKE5 1360 aa35.69■■■■□ 3.3
PREB-201ENST00000260643 ACIN1Q9UKV3 1341 aaKnown RBP35.68■■■■□ 3.3
PREB-201ENST00000260643 EEA1Q15075 1411 aa35.67■■■■□ 3.3
PREB-201ENST00000260643 SOGA1O94964 1423 aa35.53■■■■□ 3.28
PREB-201ENST00000260643 DIEXFQ68CQ4 756 aaKnown RBP35.52■■■■□ 3.28
PREB-201ENST00000260643 NEUROD1Q13562 356 aa35.49■■■■□ 3.27
PREB-201ENST00000260643 CSRNP3Q8WYN3 585 aa35.42■■■■□ 3.26
PREB-201ENST00000260643 CENPBP07199 599 aaPredicted RBP35.38■■■■□ 3.25
PREB-201ENST00000260643 GOLGA3Q08378 1498 aa35.35■■■■□ 3.25
PREB-201ENST00000260643 UNC13AQ9UPW8 1703 aa35.34■■■■□ 3.25
PREB-201ENST00000260643 RUSC2Q8N2Y8 1516 aa35.3■■■■□ 3.24
PREB-201ENST00000260643 UBTFP17480 764 aaKnown RBP35.18■■■■□ 3.22
PREB-201ENST00000260643 ZNF316A6NFI3 1004 aaPredicted RBP35.17■■■■□ 3.22
PREB-201ENST00000260643 GTF3C3Q9Y5Q9 886 aa35.17■■■■□ 3.22
PREB-201ENST00000260643 PEG3Q9GZU2 1588 aa35.17■■■■□ 3.22
PREB-201ENST00000260643 TTBK1Q5TCY1 1321 aaPredicted RBP35.15■■■■□ 3.22
PREB-201ENST00000260643 KIF21BO75037 1637 aa35.12■■■■□ 3.21
PREB-201ENST00000260643 CEP164Q9UPV0 1460 aa35.11■■■■□ 3.21
PREB-201ENST00000260643 SYNJ1O43426 1573 aa34.96■■■■□ 3.19
PREB-201ENST00000260643 BICRAQ9NZM4 1560 aa34.94■■■■□ 3.18
PREB-201ENST00000260643 BAZ1BQ9UIG0 1483 aaKnown RBP34.93■■■■□ 3.18
PREB-201ENST00000260643 CLIP1P30622 1438 aa34.91■■■■□ 3.18
PREB-201ENST00000260643 VPS8Q8N3P4 1428 aa34.9■■■■□ 3.18
PREB-201ENST00000260643 HNRNPUL2Q1KMD3 747 aaKnown RBP34.7■■■■□ 3.15
PREB-201ENST00000260643 MYT1Q01538 1121 aa34.7■■■■□ 3.15
PREB-201ENST00000260643 ATAD2BQ9ULI0 1458 aa34.68■■■■□ 3.14
PREB-201ENST00000260643 RAPGEF2Q9Y4G8 1499 aa34.67■■■■□ 3.14
PREB-201ENST00000260643 MIER1Q8N108 512 aa34.66■■■■□ 3.14
PREB-201ENST00000260643 PABPN1Q86U42 306 aaKnown RBP eCLIP34.62■■■■□ 3.13
PREB-201ENST00000260643 APLP2Q06481 763 aa34.58■■■■□ 3.13
PREB-201ENST00000260643 CLSPNQ9HAW4 1339 aa34.58■■■■□ 3.13
PREB-201ENST00000260643 TOP2BQ02880 1626 aa34.56■■■■□ 3.12
PREB-201ENST00000260643 YTHDC1Q96MU7 727 aaKnown RBP34.5■■■■□ 3.11
PREB-201ENST00000260643 ERICH3Q5RHP9 1530 aa34.48■■■■□ 3.11
PREB-201ENST00000260643 BIVM-ERCC5R4GMW8 1640 aa34.45■■■■□ 3.11
PREB-201ENST00000260643 PRXQ9BXM0 1461 aa34.4■■■■□ 3.1
PREB-201ENST00000260643 DHX57Q6P158 1386 aaKnown RBP34.35■■■■□ 3.09
PREB-201ENST00000260643 ARAP1Q96P48 1450 aa34.32■■■■□ 3.08
PREB-201ENST00000260643 RRBP1Q9P2E9 1410 aaKnown RBP34.23■■■■□ 3.07
PREB-201ENST00000260643 CUX2O14529 1486 aa34.21■■■■□ 3.07
PREB-201ENST00000260643 RANGAP1P46060 587 aaPredicted RBP34.11■■■■□ 3.05
PREB-201ENST00000260643 KANK4Q5T7N3 995 aaPredicted RBP34.09■■■■□ 3.05
PREB-201ENST00000260643 KIF27Q86VH2 1401 aa34.03■■■■□ 3.04
PREB-201ENST00000260643 CUX1P39880 1505 aa34.03■■■■□ 3.04
PREB-201ENST00000260643 HMGXB3Q12766 1538 aa34.03■■■■□ 3.04
PREB-201ENST00000260643 NCAPD3P42695 1498 aa33.97■■■■□ 3.03
PREB-201ENST00000260643 CCNB3Q8WWL7 1395 aa33.95■■■■□ 3.03
PREB-201ENST00000260643 ARHGAP35Q9NRY4 1499 aa33.93■■■■□ 3.02
PREB-201ENST00000260643 MAP3K1Q13233 1512 aa33.84■■■■□ 3.01
PREB-201ENST00000260643 CFTRP13569 1480 aa33.84■■■■□ 3.01
PREB-201ENST00000260643 SUPT16HQ9Y5B9 1047 aaKnown RBP33.84■■■■□ 3.01
PREB-201ENST00000260643 MAPKBP1O60336 1514 aa33.71■■■□□ 2.99
PREB-201ENST00000260643 TIAM1Q13009 1591 aa33.69■■■□□ 2.98
PREB-201ENST00000260643 RAB3GAP2Q9H2M9 1393 aa33.68■■■□□ 2.98
PREB-201ENST00000260643 IGF1RP08069 1367 aa33.61■■■□□ 2.97
PREB-201ENST00000260643 PRDM2Q13029 1718 aa33.6■■■□□ 2.97
PREB-201ENST00000260643 SETD5Q9C0A6 1442 aa33.58■■■□□ 2.97
PREB-201ENST00000260643 LRRC9Q6ZRR7 1453 aa33.55■■■□□ 2.96
PREB-201ENST00000260643 ITGAEP38570 1179 aa33.48■■■□□ 2.95
PREB-201ENST00000260643 TIMELESSQ9UNS1 1208 aa33.46■■■□□ 2.95
PREB-201ENST00000260643 CARMIL1Q5VZK9 1371 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms