RNA–Protein interactions for RNA: ENST00000446231.6

SMG1-202, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG1, Length 16,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-202ENST00000446231 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
SMG1-202ENST00000446231 MYT1Q01538 1121 aa12.9□□□□□ -0.34
SMG1-202ENST00000446231 PCGF6Q9BYE7 350 aa12.66□□□□□ -0.38
SMG1-202ENST00000446231 SUPT5HO00267 1087 aaKnown RBP12.63□□□□□ -0.39
SMG1-202ENST00000446231 HRCP23327 699 aa12.5□□□□□ -0.41
SMG1-202ENST00000446231 ZEB1P37275 1124 aaPredicted RBP12.43□□□□□ -0.42
SMG1-202ENST00000446231 DCAF8L2P0C7V8 631 aa12.4□□□□□ -0.42
SMG1-202ENST00000446231 CENPBP07199 599 aaPredicted RBP12.39□□□□□ -0.43
SMG1-202ENST00000446231 NISCHQ9Y2I1 1504 aa12.22□□□□□ -0.45
SMG1-202ENST00000446231 SHROOM4Q9ULL8 1493 aa12.21□□□□□ -0.45
SMG1-202ENST00000446231 PPARGC1BQ86YN6 1023 aaKnown RBP12.17□□□□□ -0.46
SMG1-202ENST00000446231 EHMT2Q96KQ7 1210 aa12.06□□□□□ -0.48
SMG1-202ENST00000446231 TRIM26Q12899 539 aaPredicted RBP12□□□□□ -0.49
SMG1-202ENST00000446231 YTHDC1Q96MU7 727 aaKnown RBP11.98□□□□□ -0.49
SMG1-202ENST00000446231 CCER1Q8TC90 406 aaPredicted RBP11.97□□□□□ -0.49
SMG1-202ENST00000446231 ERICH6Q7L0X2 663 aa11.95□□□□□ -0.5
SMG1-202ENST00000446231 FAM9AQ8IZU1 332 aaPredicted RBP11.86□□□□□ -0.51
SMG1-202ENST00000446231 TTBK1Q5TCY1 1321 aaPredicted RBP11.85□□□□□ -0.51
SMG1-202ENST00000446231 NEFLP07196 543 aa11.8□□□□□ -0.52
SMG1-202ENST00000446231 GTF3C3Q9Y5Q9 886 aa11.78□□□□□ -0.52
SMG1-202ENST00000446231 ACIN1Q9UKV3 1341 aaKnown RBP11.77□□□□□ -0.52
SMG1-202ENST00000446231 CHIC1Q5VXU3 224 aa11.77□□□□□ -0.53
SMG1-202ENST00000446231 LOC105371045A0A1W2PR82 267 aa11.76□□□□□ -0.53
SMG1-202ENST00000446231 APLP2Q06481 763 aa11.76□□□□□ -0.53
SMG1-202ENST00000446231 DIEXFQ68CQ4 756 aaKnown RBP11.72□□□□□ -0.53
SMG1-202ENST00000446231 SCAF1Q9H7N4 1312 aaKnown RBP11.72□□□□□ -0.53
SMG1-202ENST00000446231 TRIM41Q8WV44 630 aa11.67□□□□□ -0.54
SMG1-202ENST00000446231 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.52□□□□□ -0.56
SMG1-202ENST00000446231 NEUROD1Q13562 356 aa11.51□□□□□ -0.57
SMG1-202ENST00000446231 UBTFP17480 764 aaKnown RBP11.42□□□□□ -0.58
SMG1-202ENST00000446231 RTL5Q5HYW3 569 aaPredicted RBP11.42□□□□□ -0.58
SMG1-202ENST00000446231 ZNF316A6NFI3 1004 aaPredicted RBP11.39□□□□□ -0.59
SMG1-202ENST00000446231 BCANQ96GW7 911 aa11.38□□□□□ -0.59
SMG1-202ENST00000446231 RANGAP1P46060 587 aaPredicted RBP11.33□□□□□ -0.6
SMG1-202ENST00000446231 DAXXQ9UER7 740 aaPredicted RBP11.33□□□□□ -0.6
SMG1-202ENST00000446231 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
SMG1-202ENST00000446231 HNRNPUL2Q1KMD3 747 aaKnown RBP11.31□□□□□ -0.6
SMG1-202ENST00000446231 CDK11AQ9UQ88 783 aaPredicted RBP11.3□□□□□ -0.6
SMG1-202ENST00000446231 BCL11AQ9H165 835 aa11.29□□□□□ -0.6
SMG1-202ENST00000446231 ANP32EQ9BTT0 268 aa11.28□□□□□ -0.6
SMG1-202ENST00000446231 MYT1LQ9UL68 1186 aa11.26□□□□□ -0.61
SMG1-202ENST00000446231 DCAF1Q9Y4B6 1507 aa11.2□□□□□ -0.62
SMG1-202ENST00000446231 MIER1Q8N108 512 aa11.16□□□□□ -0.62
SMG1-202ENST00000446231 EIF5BO60841 1220 aaKnown RBP11.09□□□□□ -0.63
SMG1-202ENST00000446231 FKBP8Q14318 412 aa11.08□□□□□ -0.64
SMG1-202ENST00000446231 ANP32CO43423 234 aa11.06□□□□□ -0.64
SMG1-202ENST00000446231 ITGAEP38570 1179 aa11.06□□□□□ -0.64
SMG1-202ENST00000446231 ANP32AP39687 249 aaKnown RBP11.03□□□□□ -0.64
SMG1-202ENST00000446231 ATP1B4Q9UN42 357 aaPredicted RBP11□□□□□ -0.65
SMG1-202ENST00000446231 NBR1Q14596 966 aa10.99□□□□□ -0.65
SMG1-202ENST00000446231 GLIPR1L2Q4G1C9 344 aa10.98□□□□□ -0.65
SMG1-202ENST00000446231 CSRNP3Q8WYN3 585 aa10.97□□□□□ -0.65
SMG1-202ENST00000446231 SUPT16HQ9Y5B9 1047 aaKnown RBP10.92□□□□□ -0.66
SMG1-202ENST00000446231 POLR3GLQ9BT43 218 aa10.91□□□□□ -0.66
SMG1-202ENST00000446231 ZBTB47Q9UFB7 747 aaPredicted RBP10.89□□□□□ -0.67
SMG1-202ENST00000446231 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
SMG1-202ENST00000446231 MYO15BQ96JP2 1530 aa10.87□□□□□ -0.67
SMG1-202ENST00000446231 CNGB1Q14028 1251 aaPredicted RBP10.87□□□□□ -0.67
SMG1-202ENST00000446231 DEKP35659 375 aaKnown RBP10.86□□□□□ -0.67
SMG1-202ENST00000446231 TSHZ2Q9NRE2 1034 aa10.86□□□□□ -0.67
SMG1-202ENST00000446231 RBM19Q9Y4C8 960 aaKnown RBP10.82□□□□□ -0.68
SMG1-202ENST00000446231 DDX10Q13206 875 aaKnown RBP10.81□□□□□ -0.68
SMG1-202ENST00000446231 TRIM52Q96A61 297 aa10.77□□□□□ -0.68
SMG1-202ENST00000446231 NOP58Q9Y2X3 529 aaKnown RBP10.76□□□□□ -0.69
SMG1-202ENST00000446231 IRX6P78412 446 aaPredicted RBP10.76□□□□□ -0.69
SMG1-202ENST00000446231 HNRNPUQ00839 825 aaKnown RBP eCLIP10.76□□□□□ -0.69
SMG1-202ENST00000446231 FAM50AQ14320 339 aaKnown RBP10.75□□□□□ -0.69
SMG1-202ENST00000446231 RTN4Q9NQC3 1192 aaKnown RBP10.73□□□□□ -0.69
SMG1-202ENST00000446231 CCDC136Q96JN2 1154 aa10.73□□□□□ -0.69
SMG1-202ENST00000446231 ERICH6BQ5W0A0 696 aa10.72□□□□□ -0.69
SMG1-202ENST00000446231 NEFMP07197 916 aa10.71□□□□□ -0.69
SMG1-202ENST00000446231 CCDC180Q9P1Z9 1646 aa10.71□□□□□ -0.7
SMG1-202ENST00000446231 PPP4R2Q9NY27 417 aa10.69□□□□□ -0.7
SMG1-202ENST00000446231 LAS1LQ9Y4W2 734 aaKnown RBP10.65□□□□□ -0.7
SMG1-202ENST00000446231 DDRGK1Q96HY6 314 aa10.65□□□□□ -0.71
SMG1-202ENST00000446231 PRKCSHP14314 528 aaPredicted RBP10.64□□□□□ -0.71
SMG1-202ENST00000446231 PPM1GO15355 546 aaPredicted RBP10.63□□□□□ -0.71
SMG1-202ENST00000446231 ANP32BQ92688 251 aaKnown RBP10.63□□□□□ -0.71
SMG1-202ENST00000446231 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.62□□□□□ -0.71
SMG1-202ENST00000446231 FAM9BQ8IZU0 186 aa10.61□□□□□ -0.71
SMG1-202ENST00000446231 NAP1L5Q96NT1 182 aaPredicted RBP10.56□□□□□ -0.72
SMG1-202ENST00000446231 MRS2Q9HD23 443 aa10.56□□□□□ -0.72
SMG1-202ENST00000446231 B4GALNT3Q6L9W6 998 aa10.55□□□□□ -0.72
SMG1-202ENST00000446231 CANXP27824 592 aaKnown RBP10.54□□□□□ -0.72
SMG1-202ENST00000446231 TNNT2P45379 298 aaPredicted RBP10.54□□□□□ -0.72
SMG1-202ENST00000446231 ZNF326Q5BKZ1 582 aaKnown RBP10.54□□□□□ -0.72
SMG1-202ENST00000446231 CCER2I3L3R5 266 aa10.53□□□□□ -0.72
SMG1-202ENST00000446231 FANCIQ9NVI1 1328 aa10.53□□□□□ -0.72
SMG1-202ENST00000446231 ARXQ96QS3 562 aa10.53□□□□□ -0.72
SMG1-202ENST00000446231 BECN1Q14457 450 aa10.51□□□□□ -0.73
SMG1-202ENST00000446231 RSPH6AQ9H0K4 717 aa10.5□□□□□ -0.73
SMG1-202ENST00000446231 HIRIP3Q9BW71 556 aaPredicted RBP10.5□□□□□ -0.73
SMG1-202ENST00000446231 UPF2Q9HAU5 1272 aaKnown RBP10.49□□□□□ -0.73
SMG1-202ENST00000446231 IPO9Q96P70 1041 aaKnown RBP10.48□□□□□ -0.73
SMG1-202ENST00000446231 TONSLQ96HA7 1378 aa10.48□□□□□ -0.73
SMG1-202ENST00000446231 HSP90AA1P07900 732 aaKnown RBP10.47□□□□□ -0.73
SMG1-202ENST00000446231 ANO8Q9HCE9 1232 aaPredicted RBP10.45□□□□□ -0.74
SMG1-202ENST00000446231 L1TD1Q5T7N2 865 aaKnown RBP10.44□□□□□ -0.74
SMG1-202ENST00000446231 TMC1Q8TDI8 760 aa10.43□□□□□ -0.74
SMG1-202ENST00000446231 TRIM44Q96DX7 344 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms