RNA–Protein interactions for RNA: ENST00000558562.1

TMED3-205, Transcript of transmembrane p24 trafficking protein 3, humanhuman

TSL 2

Gene TMED3, Length 938 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED3-205ENST00000558562 NISCHQ9Y2I1 1504 aa33.05■■■□□ 2.88
TMED3-205ENST00000558562 ABCC9O60706 1549 aa30.33■■■□□ 2.45
TMED3-205ENST00000558562 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
TMED3-205ENST00000558562 DNAJC5BQ9UF47 199 aa28.87■■■□□ 2.21
TMED3-205ENST00000558562 RB1CC1Q8TDY2 1594 aa28.59■■■□□ 2.17
TMED3-205ENST00000558562 NACADO15069 1562 aa28.28■■■□□ 2.12
TMED3-205ENST00000558562 PABPN1Q86U42 306 aaKnown RBP eCLIP28.22■■■□□ 2.11
TMED3-205ENST00000558562 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
TMED3-205ENST00000558562 UNC13AQ9UPW8 1703 aa27.98■■■□□ 2.07
TMED3-205ENST00000558562 BICRAQ9NZM4 1560 aa27.81■■■□□ 2.04
TMED3-205ENST00000558562 MYO15BQ96JP2 1530 aa27.69■■■□□ 2.02
TMED3-205ENST00000558562 CC2D2AQ9P2K1 1620 aa27.34■■□□□ 1.97
TMED3-205ENST00000558562 CECR2Q9BXF3 1484 aa27.33■■□□□ 1.97
TMED3-205ENST00000558562 ZCCHC6Q5VYS8 1495 aaKnown RBP27.28■■□□□ 1.96
TMED3-205ENST00000558562 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
TMED3-205ENST00000558562 SCRIBQ14160 1630 aa27.22■■□□□ 1.95
TMED3-205ENST00000558562 DCAF1Q9Y4B6 1507 aa27.2■■□□□ 1.94
TMED3-205ENST00000558562 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
TMED3-205ENST00000558562 DNAJC5Q9H3Z4 198 aa26.76■■□□□ 1.87
TMED3-205ENST00000558562 CUX2O14529 1486 aa26.22■■□□□ 1.79
TMED3-205ENST00000558562 ERCC6Q03468 1493 aa26.19■■□□□ 1.78
TMED3-205ENST00000558562 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
TMED3-205ENST00000558562 ATAD2BQ9ULI0 1458 aa26.01■■□□□ 1.75
TMED3-205ENST00000558562 NESP48681 1621 aa25.94■■□□□ 1.74
TMED3-205ENST00000558562 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
TMED3-205ENST00000558562 SMARCA4P51532 1647 aa25.87■■□□□ 1.73
TMED3-205ENST00000558562 HMGXB3Q12766 1538 aa25.87■■□□□ 1.73
TMED3-205ENST00000558562 BAZ1BQ9UIG0 1483 aaKnown RBP25.74■■□□□ 1.71
TMED3-205ENST00000558562 THOC2Q8NI27 1593 aaKnown RBP25.69■■□□□ 1.7
TMED3-205ENST00000558562 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
TMED3-205ENST00000558562 LAMC3Q9Y6N6 1575 aa25.6■■□□□ 1.69
TMED3-205ENST00000558562 PEG3Q9GZU2 1588 aa25.57■■□□□ 1.68
TMED3-205ENST00000558562 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
TMED3-205ENST00000558562 MROH2BQ7Z745 1585 aa25.5■■□□□ 1.67
TMED3-205ENST00000558562 TRIM41Q8WV44 630 aa25.49■■□□□ 1.67
TMED3-205ENST00000558562 PDS5BQ9NTI5 1447 aa25.48■■□□□ 1.67
TMED3-205ENST00000558562 CADPSQ9ULU8 1353 aa25.33■■□□□ 1.65
TMED3-205ENST00000558562 MRC2Q9UBG0 1479 aa25.3■■□□□ 1.64
TMED3-205ENST00000558562 WDR62O43379 1518 aa25.23■■□□□ 1.63
TMED3-205ENST00000558562 WIZO95785 1651 aa25.18■■□□□ 1.62
TMED3-205ENST00000558562 CEP164Q9UPV0 1460 aa25.11■■□□□ 1.61
TMED3-205ENST00000558562 FANCD2Q9BXW9 1451 aa25.07■■□□□ 1.6
TMED3-205ENST00000558562 OSCARQ8IYS5 282 aa25.01■■□□□ 1.59
TMED3-205ENST00000558562 CFTRP13569 1480 aa24.95■■□□□ 1.58
TMED3-205ENST00000558562 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
TMED3-205ENST00000558562 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
TMED3-205ENST00000558562 TOP2AP11388 1531 aaKnown RBP24.78■■□□□ 1.56
TMED3-205ENST00000558562 RIMBP3CA6NJZ7 1639 aa24.74■■□□□ 1.55
TMED3-205ENST00000558562 RIMBP3BA6NNM3 1639 aa24.74■■□□□ 1.55
TMED3-205ENST00000558562 RIMBP3Q9UFD9 1639 aa24.74■■□□□ 1.55
TMED3-205ENST00000558562 ZNF608Q9ULD9 1512 aaPredicted RBP24.69■■□□□ 1.54
TMED3-205ENST00000558562 PRDM2Q13029 1718 aa24.62■■□□□ 1.53
TMED3-205ENST00000558562 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
TMED3-205ENST00000558562 ARHGEF11O15085 1522 aa24.61■■□□□ 1.53
TMED3-205ENST00000558562 CCDC88BA6NC98 1476 aa24.55■■□□□ 1.52
TMED3-205ENST00000558562 TOPBP1Q92547 1522 aa24.54■■□□□ 1.52
TMED3-205ENST00000558562 CYB5RLQ6IPT4 315 aa24.52■■□□□ 1.52
TMED3-205ENST00000558562 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
TMED3-205ENST00000558562 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.5
TMED3-205ENST00000558562 CHD1O14646 1710 aa24.4■■□□□ 1.5
TMED3-205ENST00000558562 ABCC8Q09428 1581 aa24.39■■□□□ 1.5
TMED3-205ENST00000558562 TRHP20396 242 aaPredicted RBP24.39■■□□□ 1.49
TMED3-205ENST00000558562 DNMBPQ6XZF7 1577 aa24.38■■□□□ 1.49
TMED3-205ENST00000558562 FBLN2P98095 1184 aa24.38■■□□□ 1.49
TMED3-205ENST00000558562 ARAP1Q96P48 1450 aa24.34■■□□□ 1.49
TMED3-205ENST00000558562 TARBP1Q13395 1621 aaKnown RBP24.34■■□□□ 1.49
TMED3-205ENST00000558562 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
TMED3-205ENST00000558562 RAD54L2Q9Y4B4 1467 aa24.23■■□□□ 1.47
TMED3-205ENST00000558562 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.46
TMED3-205ENST00000558562 SOGA1O94964 1423 aa24.16■■□□□ 1.46
TMED3-205ENST00000558562 SNAPC4Q5SXM2 1469 aa24.13■■□□□ 1.45
TMED3-205ENST00000558562 CHMP7Q8WUX9 453 aaPredicted RBP24.08■■□□□ 1.45
TMED3-205ENST00000558562 CLASP1Q7Z460 1538 aa24.08■■□□□ 1.45
TMED3-205ENST00000558562 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
TMED3-205ENST00000558562 SYNJ1O43426 1573 aa24.02■■□□□ 1.44
TMED3-205ENST00000558562 MAGI1Q96QZ7 1491 aaPredicted RBP23.99■■□□□ 1.43
TMED3-205ENST00000558562 WDR97A6NE52 1622 aa23.98■■□□□ 1.43
TMED3-205ENST00000558562 CUX1P39880 1505 aa23.97■■□□□ 1.43
TMED3-205ENST00000558562 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
TMED3-205ENST00000558562 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
TMED3-205ENST00000558562 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
TMED3-205ENST00000558562 GAPVD1Q14C86 1478 aa23.87■■□□□ 1.41
TMED3-205ENST00000558562 PBRM1Q86U86 1689 aa23.85■■□□□ 1.41
TMED3-205ENST00000558562 ERCC6L2Q5T890 1561 aa23.74■■□□□ 1.39
TMED3-205ENST00000558562 ABCA5Q8WWZ7 1642 aa23.73■■□□□ 1.39
TMED3-205ENST00000558562 ABCA10Q8WWZ4 1543 aa23.73■■□□□ 1.39
TMED3-205ENST00000558562 GRIN2AQ12879 1464 aa23.67■■□□□ 1.38
TMED3-205ENST00000558562 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
TMED3-205ENST00000558562 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
TMED3-205ENST00000558562 ADAMTS12P58397 1594 aa23.59■■□□□ 1.37
TMED3-205ENST00000558562 NUP160Q12769 1436 aa23.59■■□□□ 1.37
TMED3-205ENST00000558562 WRNQ14191 1432 aaPredicted RBP eCLIP23.56■■□□□ 1.36
TMED3-205ENST00000558562 SHROOM2Q13796 1616 aa23.52■■□□□ 1.36
TMED3-205ENST00000558562 FHAD1B1AJZ9 1412 aa23.5■■□□□ 1.35
TMED3-205ENST00000558562 KIF13AQ9H1H9 1805 aa23.47■■□□□ 1.35
TMED3-205ENST00000558562 PRG4Q92954 1404 aaPredicted RBP23.44■■□□□ 1.34
TMED3-205ENST00000558562 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
TMED3-205ENST00000558562 BIVM-ERCC5R4GMW8 1640 aa23.43■■□□□ 1.34
TMED3-205ENST00000558562 ERICH3Q5RHP9 1530 aa23.4■■□□□ 1.34
TMED3-205ENST00000558562 JPH4Q96JJ6 628 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 778.7 ms