RNA–Protein interactions for RNA: ENST00000540367.5

CPT1A-206, Transcript of carnitine palmitoyltransferase 1A, humanhuman

TSL 1 (best) BASIC

Gene CPT1A, Length 2,496 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPT1A-206ENST00000540367 NISCHQ9Y2I1 1504 aa22.34■■□□□ 1.17
CPT1A-206ENST00000540367 SHROOM4Q9ULL8 1493 aa19.45■□□□□ 0.7
CPT1A-206ENST00000540367 SUPT5HO00267 1087 aaKnown RBP19.07■□□□□ 0.64
CPT1A-206ENST00000540367 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
CPT1A-206ENST00000540367 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
CPT1A-206ENST00000540367 DCAF8L2P0C7V8 631 aa18.95■□□□□ 0.62
CPT1A-206ENST00000540367 HRCP23327 699 aa18.77■□□□□ 0.6
CPT1A-206ENST00000540367 MYO15BQ96JP2 1530 aa18.77■□□□□ 0.59
CPT1A-206ENST00000540367 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
CPT1A-206ENST00000540367 PCGF6Q9BYE7 350 aa18.46■□□□□ 0.55
CPT1A-206ENST00000540367 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
CPT1A-206ENST00000540367 PPARGC1BQ86YN6 1023 aaKnown RBP18.27■□□□□ 0.52
CPT1A-206ENST00000540367 ABCC9O60706 1549 aa18.19■□□□□ 0.5
CPT1A-206ENST00000540367 LOC105371045A0A1W2PR82 267 aa18.12■□□□□ 0.49
CPT1A-206ENST00000540367 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
CPT1A-206ENST00000540367 SCRIBQ14160 1630 aa18.02■□□□□ 0.47
CPT1A-206ENST00000540367 ZEB1P37275 1124 aaPredicted RBP17.86■□□□□ 0.45
CPT1A-206ENST00000540367 PELP1Q8IZL8 1130 aaKnown RBP17.79■□□□□ 0.44
CPT1A-206ENST00000540367 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
CPT1A-206ENST00000540367 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
CPT1A-206ENST00000540367 FAM9AQ8IZU1 332 aaPredicted RBP17.71■□□□□ 0.42
CPT1A-206ENST00000540367 RB1CC1Q8TDY2 1594 aa17.69■□□□□ 0.42
CPT1A-206ENST00000540367 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
CPT1A-206ENST00000540367 NACADO15069 1562 aa17.66■□□□□ 0.42
CPT1A-206ENST00000540367 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
CPT1A-206ENST00000540367 SCAF1Q9H7N4 1312 aaKnown RBP17.51■□□□□ 0.39
CPT1A-206ENST00000540367 MROH2BQ7Z745 1585 aa17.47■□□□□ 0.39
CPT1A-206ENST00000540367 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.385e-6■■■■□ 22.2
CPT1A-206ENST00000540367 WIZO95785 1651 aa17.36■□□□□ 0.37
CPT1A-206ENST00000540367 UNC13AQ9UPW8 1703 aa17.31■□□□□ 0.36
CPT1A-206ENST00000540367 EIF4G1Q04637 1599 aaKnown RBP17.29■□□□□ 0.36
CPT1A-206ENST00000540367 BAZ1AQ9NRL2 1556 aaPredicted RBP17.26■□□□□ 0.35
CPT1A-206ENST00000540367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
CPT1A-206ENST00000540367 ACIN1Q9UKV3 1341 aaKnown RBP17.24■□□□□ 0.35
CPT1A-206ENST00000540367 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
CPT1A-206ENST00000540367 TTBK1Q5TCY1 1321 aaPredicted RBP17.19■□□□□ 0.34
CPT1A-206ENST00000540367 WRNQ14191 1432 aaPredicted RBP eCLIP17.16■□□□□ 0.34
CPT1A-206ENST00000540367 MYT1Q01538 1121 aa17.15■□□□□ 0.34
CPT1A-206ENST00000540367 NEUROD1Q13562 356 aa17.15■□□□□ 0.34
CPT1A-206ENST00000540367 BICRAQ9NZM4 1560 aa17.14■□□□□ 0.33
CPT1A-206ENST00000540367 DIEXFQ68CQ4 756 aaKnown RBP17.11■□□□□ 0.33
CPT1A-206ENST00000540367 CENPBP07199 599 aaPredicted RBP17.08■□□□□ 0.33
CPT1A-206ENST00000540367 SMARCA4P51532 1647 aa17.08■□□□□ 0.32
CPT1A-206ENST00000540367 CEP162Q5TB80 1403 aa17.05■□□□□ 0.32
CPT1A-206ENST00000540367 TOP2AP11388 1531 aaKnown RBP17.05■□□□□ 0.32
CPT1A-206ENST00000540367 ABCC8Q09428 1581 aa17.04■□□□□ 0.32
CPT1A-206ENST00000540367 CCDC88BA6NC98 1476 aa17.03■□□□□ 0.32
CPT1A-206ENST00000540367 GTF3C3Q9Y5Q9 886 aa17.03■□□□□ 0.32
CPT1A-206ENST00000540367 TNIKQ9UKE5 1360 aa16.99■□□□□ 0.31
CPT1A-206ENST00000540367 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
CPT1A-206ENST00000540367 EEA1Q15075 1411 aa16.95■□□□□ 0.3
CPT1A-206ENST00000540367 SOGA1O94964 1423 aa16.93■□□□□ 0.3
CPT1A-206ENST00000540367 ZNF316A6NFI3 1004 aaPredicted RBP16.89■□□□□ 0.29
CPT1A-206ENST00000540367 GOLGA3Q08378 1498 aa16.85■□□□□ 0.29
CPT1A-206ENST00000540367 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
CPT1A-206ENST00000540367 RUSC2Q8N2Y8 1516 aa16.84■□□□□ 0.29
CPT1A-206ENST00000540367 UBTFP17480 764 aaKnown RBP16.79■□□□□ 0.28
CPT1A-206ENST00000540367 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
CPT1A-206ENST00000540367 RANGAP1P46060 587 aaPredicted RBP16.73■□□□□ 0.27
CPT1A-206ENST00000540367 KIF21BO75037 1637 aa16.73■□□□□ 0.27
CPT1A-206ENST00000540367 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
CPT1A-206ENST00000540367 YTHDC1Q96MU7 727 aaKnown RBP16.7■□□□□ 0.26
CPT1A-206ENST00000540367 BAZ1BQ9UIG0 1483 aaKnown RBP16.68■□□□□ 0.26
CPT1A-206ENST00000540367 MIER1Q8N108 512 aa16.68■□□□□ 0.26
CPT1A-206ENST00000540367 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
CPT1A-206ENST00000540367 CLIP1P30622 1438 aa16.65■□□□□ 0.26
CPT1A-206ENST00000540367 VPS8Q8N3P4 1428 aa16.64■□□□□ 0.25
CPT1A-206ENST00000540367 SYNJ1O43426 1573 aa16.64■□□□□ 0.25
CPT1A-206ENST00000540367 HNRNPUL2Q1KMD3 747 aaKnown RBP16.63■□□□□ 0.25
CPT1A-206ENST00000540367 RAPGEF2Q9Y4G8 1499 aa16.51■□□□□ 0.23
CPT1A-206ENST00000540367 APLP2Q06481 763 aa16.51■□□□□ 0.23
CPT1A-206ENST00000540367 CLSPNQ9HAW4 1339 aa16.5■□□□□ 0.23
CPT1A-206ENST00000540367 DHX57Q6P158 1386 aaKnown RBP16.43■□□□□ 0.22
CPT1A-206ENST00000540367 DNAJC5BQ9UF47 199 aa16.43■□□□□ 0.22
CPT1A-206ENST00000540367 TOP2BQ02880 1626 aa16.41■□□□□ 0.22
CPT1A-206ENST00000540367 NCAPD3P42695 1498 aa16.41■□□□□ 0.22
CPT1A-206ENST00000540367 ERICH3Q5RHP9 1530 aa16.39■□□□□ 0.21
CPT1A-206ENST00000540367 CC2D2AQ9P2K1 1620 aa16.38■□□□□ 0.21
CPT1A-206ENST00000540367 BIVM-ERCC5R4GMW8 1640 aa16.36■□□□□ 0.21
CPT1A-206ENST00000540367 ARAP1Q96P48 1450 aa16.36■□□□□ 0.21
CPT1A-206ENST00000540367 SUPT16HQ9Y5B9 1047 aaKnown RBP16.33■□□□□ 0.2
CPT1A-206ENST00000540367 PRXQ9BXM0 1461 aa16.32■□□□□ 0.2
CPT1A-206ENST00000540367 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
CPT1A-206ENST00000540367 RRBP1Q9P2E9 1410 aaKnown RBP16.32■□□□□ 0.2
CPT1A-206ENST00000540367 CUX2O14529 1486 aa16.31■□□□□ 0.2
CPT1A-206ENST00000540367 KANK4Q5T7N3 995 aaPredicted RBP16.26■□□□□ 0.19
CPT1A-206ENST00000540367 CUX1P39880 1505 aa16.25■□□□□ 0.19
CPT1A-206ENST00000540367 CFTRP13569 1480 aa16.23■□□□□ 0.19
CPT1A-206ENST00000540367 CCNB3Q8WWL7 1395 aa16.2■□□□□ 0.18
CPT1A-206ENST00000540367 ITGAEP38570 1179 aa16.18■□□□□ 0.18
CPT1A-206ENST00000540367 TSHZ2Q9NRE2 1034 aa16.16■□□□□ 0.18
CPT1A-206ENST00000540367 ARHGAP35Q9NRY4 1499 aa16.15■□□□□ 0.18
CPT1A-206ENST00000540367 KIF27Q86VH2 1401 aa16.15■□□□□ 0.18
CPT1A-206ENST00000540367 NESP48681 1621 aa16.14■□□□□ 0.17
CPT1A-206ENST00000540367 MAPKBP1O60336 1514 aa16.13■□□□□ 0.17
CPT1A-206ENST00000540367 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
CPT1A-206ENST00000540367 RAB3GAP2Q9H2M9 1393 aa16.1■□□□□ 0.17
CPT1A-206ENST00000540367 MAP3K1Q13233 1512 aa16.07■□□□□ 0.16
CPT1A-206ENST00000540367 TIAM1Q13009 1591 aa16.06■□□□□ 0.16
CPT1A-206ENST00000540367 KCNH8Q96L42 1107 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms