RNA–Protein interactions for RNA: ENST00000474993.5

NPM3-204, Transcript of nucleophosmin/nucleoplasmin 3, humanhuman

TSL 2

Gene NPM3, Length 755 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM3-204ENST00000474993 NISCHQ9Y2I1 1504 aa48.17■■■■■ 5.3
NPM3-204ENST00000474993 CCDC180Q9P1Z9 1646 aa42.46■■■■■ 4.39
NPM3-204ENST00000474993 ABCC9O60706 1549 aa40.8■■■■■ 4.12
NPM3-204ENST00000474993 ZCCHC6Q5VYS8 1495 aaKnown RBP40.27■■■■■ 4.04
NPM3-204ENST00000474993 DCAF8L2P0C7V8 631 aa40.04■■■■■ 4
NPM3-204ENST00000474993 DCAF1Q9Y4B6 1507 aa39.94■■■■□ 3.98
NPM3-204ENST00000474993 MYO15BQ96JP2 1530 aa39.84■■■■□ 3.97
NPM3-204ENST00000474993 NACADO15069 1562 aa39.8■■■■□ 3.96
NPM3-204ENST00000474993 RB1CC1Q8TDY2 1594 aa39.64■■■■□ 3.94
NPM3-204ENST00000474993 SCRIBQ14160 1630 aa38.77■■■■□ 3.8
NPM3-204ENST00000474993 UNC13AQ9UPW8 1703 aa38.55■■■■□ 3.76
NPM3-204ENST00000474993 SHROOM4Q9ULL8 1493 aa38.52■■■■□ 3.76
NPM3-204ENST00000474993 BICRAQ9NZM4 1560 aa38.29■■■■□ 3.72
NPM3-204ENST00000474993 PABPN1Q86U42 306 aaKnown RBP eCLIP38.29■■■■□ 3.72
NPM3-204ENST00000474993 CECR2Q9BXF3 1484 aa37.39■■■■□ 3.58
NPM3-204ENST00000474993 BAZ1AQ9NRL2 1556 aaPredicted RBP37.32■■■■□ 3.56
NPM3-204ENST00000474993 EIF4G1Q04637 1599 aaKnown RBP37.28■■■■□ 3.56
NPM3-204ENST00000474993 SMARCA4P51532 1647 aa37.18■■■■□ 3.54
NPM3-204ENST00000474993 MROH2BQ7Z745 1585 aa37.09■■■■□ 3.53
NPM3-204ENST00000474993 RSF1Q96T23 1441 aaPredicted RBP37.01■■■■□ 3.51
NPM3-204ENST00000474993 CC2D2AQ9P2K1 1620 aa36.92■■■■□ 3.5
NPM3-204ENST00000474993 SMARCA2P51531 1590 aa36.86■■■■□ 3.49
NPM3-204ENST00000474993 PEG3Q9GZU2 1588 aa36.83■■■■□ 3.49
NPM3-204ENST00000474993 ATAD2BQ9ULI0 1458 aa36.82■■■■□ 3.49
NPM3-204ENST00000474993 SUPT5HO00267 1087 aaKnown RBP36.72■■■■□ 3.47
NPM3-204ENST00000474993 NCAPD3P42695 1498 aa36.72■■■■□ 3.47
NPM3-204ENST00000474993 WIZO95785 1651 aa36.7■■■■□ 3.47
NPM3-204ENST00000474993 DNAJC5BQ9UF47 199 aa36.69■■■■□ 3.46
NPM3-204ENST00000474993 BAZ1BQ9UIG0 1483 aaKnown RBP36.59■■■■□ 3.45
NPM3-204ENST00000474993 HMGXB3Q12766 1538 aa36.58■■■■□ 3.45
NPM3-204ENST00000474993 TOP2AP11388 1531 aaKnown RBP36.44■■■■□ 3.42
NPM3-204ENST00000474993 CCDC88BA6NC98 1476 aa36■■■■□ 3.35
NPM3-204ENST00000474993 CADPSQ9ULU8 1353 aa35.72■■■■□ 3.31
NPM3-204ENST00000474993 CFTRP13569 1480 aa35.63■■■■□ 3.29
NPM3-204ENST00000474993 LAMC3Q9Y6N6 1575 aa35.6■■■■□ 3.29
NPM3-204ENST00000474993 NESP48681 1621 aa35.49■■■■□ 3.27
NPM3-204ENST00000474993 PDS5BQ9NTI5 1447 aa35.42■■■■□ 3.26
NPM3-204ENST00000474993 PRDM2Q13029 1718 aa35.31■■■■□ 3.24
NPM3-204ENST00000474993 FANCD2Q9BXW9 1451 aa35.27■■■■□ 3.24
NPM3-204ENST00000474993 ERCC6Q03468 1493 aa35.19■■■■□ 3.22
NPM3-204ENST00000474993 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
NPM3-204ENST00000474993 KIF21AQ7Z4S6 1674 aa35.05■■■■□ 3.2
NPM3-204ENST00000474993 MRC2Q9UBG0 1479 aa34.94■■■■□ 3.18
NPM3-204ENST00000474993 ABCC8Q09428 1581 aa34.92■■■■□ 3.18
NPM3-204ENST00000474993 WRNQ14191 1432 aaPredicted RBP eCLIP34.91■■■■□ 3.18
NPM3-204ENST00000474993 URB2Q14146 1524 aaKnown RBP34.81■■■■□ 3.16
NPM3-204ENST00000474993 DNMBPQ6XZF7 1577 aa34.8■■■■□ 3.16
NPM3-204ENST00000474993 TOPBP1Q92547 1522 aa34.76■■■■□ 3.16
NPM3-204ENST00000474993 THOC2Q8NI27 1593 aaKnown RBP34.76■■■■□ 3.16
NPM3-204ENST00000474993 WDR62O43379 1518 aa34.76■■■■□ 3.15
NPM3-204ENST00000474993 CUX1P39880 1505 aa34.76■■■■□ 3.15
NPM3-204ENST00000474993 CHIC1Q5VXU3 224 aa34.72■■■■□ 3.15
NPM3-204ENST00000474993 TRIM41Q8WV44 630 aa34.71■■■■□ 3.15
NPM3-204ENST00000474993 TOP2BQ02880 1626 aa34.7■■■■□ 3.14
NPM3-204ENST00000474993 SYNJ1O43426 1573 aa34.66■■■■□ 3.14
NPM3-204ENST00000474993 BIVM-ERCC5R4GMW8 1640 aa34.65■■■■□ 3.14
NPM3-204ENST00000474993 FGD5Q6ZNL6 1462 aa34.55■■■■□ 3.12
NPM3-204ENST00000474993 CUX2O14529 1486 aa34.52■■■■□ 3.12
NPM3-204ENST00000474993 POLA1P09884 1462 aaPredicted RBP34.52■■■■□ 3.12
NPM3-204ENST00000474993 SOGA1O94964 1423 aa34.47■■■■□ 3.11
NPM3-204ENST00000474993 IFT140Q96RY7 1462 aa34.41■■■■□ 3.1
NPM3-204ENST00000474993 RAD54L2Q9Y4B4 1467 aa34.34■■■■□ 3.09
NPM3-204ENST00000474993 ABCA10Q8WWZ4 1543 aa34.29■■■■□ 3.08
NPM3-204ENST00000474993 TARBP1Q13395 1621 aaKnown RBP34.26■■■■□ 3.08
NPM3-204ENST00000474993 KIF27Q86VH2 1401 aa34.17■■■■□ 3.06
NPM3-204ENST00000474993 WDR97A6NE52 1622 aa34.15■■■■□ 3.06
NPM3-204ENST00000474993 TDRD9Q8NDG6 1382 aaKnown RBP34.13■■■■□ 3.05
NPM3-204ENST00000474993 EEA1Q15075 1411 aa34.08■■■■□ 3.05
NPM3-204ENST00000474993 ZNF608Q9ULD9 1512 aaPredicted RBP34.08■■■■□ 3.05
NPM3-204ENST00000474993 GAPVD1Q14C86 1478 aa34.06■■■■□ 3.04
NPM3-204ENST00000474993 AQRO60306 1485 aaKnown RBP eCLIP34.04■■■■□ 3.04
NPM3-204ENST00000474993 ABCA5Q8WWZ7 1642 aa34.01■■■■□ 3.03
NPM3-204ENST00000474993 EIF4G3O43432 1585 aaKnown RBP33.98■■■■□ 3.03
NPM3-204ENST00000474993 GRIN2BQ13224 1484 aa33.96■■■■□ 3.03
NPM3-204ENST00000474993 RUSC2Q8N2Y8 1516 aa33.94■■■■□ 3.02
NPM3-204ENST00000474993 ERICH3Q5RHP9 1530 aa33.9■■■■□ 3.02
NPM3-204ENST00000474993 FAM9AQ8IZU1 332 aaPredicted RBP33.9■■■■□ 3.02
NPM3-204ENST00000474993 CSRNP3Q8WYN3 585 aa33.9■■■■□ 3.02
NPM3-204ENST00000474993 IGF1RP08069 1367 aa33.88■■■■□ 3.01
NPM3-204ENST00000474993 PBRM1Q86U86 1689 aa33.81■■■■□ 3
NPM3-204ENST00000474993 MAGI1Q96QZ7 1491 aaPredicted RBP33.78■■■■□ 3
NPM3-204ENST00000474993 SNAPC4Q5SXM2 1469 aa33.75■■■□□ 2.99
NPM3-204ENST00000474993 CARMIL1Q5VZK9 1371 aa33.73■■■□□ 2.99
NPM3-204ENST00000474993 FHAD1B1AJZ9 1412 aa33.72■■■□□ 2.99
NPM3-204ENST00000474993 CUL7Q14999 1698 aa33.72■■■□□ 2.99
NPM3-204ENST00000474993 PRXQ9BXM0 1461 aa33.64■■■□□ 2.98
NPM3-204ENST00000474993 CHMP7Q8WUX9 453 aaPredicted RBP33.64■■■□□ 2.98
NPM3-204ENST00000474993 ADAMTS12P58397 1594 aa33.64■■■□□ 2.98
NPM3-204ENST00000474993 SYNJ2O15056 1496 aa33.63■■■□□ 2.97
NPM3-204ENST00000474993 RAPGEF2Q9Y4G8 1499 aa33.61■■■□□ 2.97
NPM3-204ENST00000474993 FBLN2P98095 1184 aa33.58■■■□□ 2.97
NPM3-204ENST00000474993 KIF21BO75037 1637 aa33.53■■■□□ 2.96
NPM3-204ENST00000474993 GRIN2AQ12879 1464 aa33.49■■■□□ 2.95
NPM3-204ENST00000474993 GOLGA3Q08378 1498 aa33.47■■■□□ 2.95
NPM3-204ENST00000474993 UBTFP17480 764 aaKnown RBP33.38■■■□□ 2.93
NPM3-204ENST00000474993 CHD1O14646 1710 aa33.36■■■□□ 2.93
NPM3-204ENST00000474993 EHMT2Q96KQ7 1210 aa33.35■■■□□ 2.93
NPM3-204ENST00000474993 OSCARQ8IYS5 282 aa33.31■■■□□ 2.92
NPM3-204ENST00000474993 NUP160Q12769 1436 aa33.3■■■□□ 2.92
NPM3-204ENST00000474993 LOC105371045A0A1W2PR82 267 aa33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms