Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
TCRBV3S1A0A5B6 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
TCRBV3S1A0A5B6 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.45■■□□□ 1.5
TCRBV3S1A0A5B6 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
TCRBV3S1A0A5B6 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.44■■□□□ 1.5
TCRBV3S1A0A5B6 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
TCRBV3S1A0A5B6 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.43■■□□□ 1.5
TCRBV3S1A0A5B6 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
TCRBV3S1A0A5B6 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.43■■□□□ 1.5
TCRBV3S1A0A5B6 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.42■■□□□ 1.5
TCRBV3S1A0A5B6 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
TCRBV3S1A0A5B6 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
TCRBV3S1A0A5B6 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TCRBV3S1A0A5B6 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TCRBV3S1A0A5B6 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
TCRBV3S1A0A5B6 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.39■■□□□ 1.5
TCRBV3S1A0A5B6 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.39■■□□□ 1.5
TCRBV3S1A0A5B6 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.39■■□□□ 1.49
TCRBV3S1A0A5B6 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
TCRBV3S1A0A5B6 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
TCRBV3S1A0A5B6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.38■■□□□ 1.49
TCRBV3S1A0A5B6 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.38■■□□□ 1.49
TCRBV3S1A0A5B6 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TCRBV3S1A0A5B6 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
TCRBV3S1A0A5B6 AC010864.1-201ENST00000609407 1511 ntBASIC24.38■■□□□ 1.49
TCRBV3S1A0A5B6 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
TCRBV3S1A0A5B6 ZNRF2P1-201ENST00000441407 443 ntBASIC24.37■■□□□ 1.49
TCRBV3S1A0A5B6 AL031258.1-201ENST00000623562 325 ntBASIC24.37■■□□□ 1.49
TCRBV3S1A0A5B6 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TCRBV3S1A0A5B6 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.36■■□□□ 1.49
TCRBV3S1A0A5B6 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
TCRBV3S1A0A5B6 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
TCRBV3S1A0A5B6 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
TCRBV3S1A0A5B6 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
TCRBV3S1A0A5B6 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
TCRBV3S1A0A5B6 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TCRBV3S1A0A5B6 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TCRBV3S1A0A5B6 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
TCRBV3S1A0A5B6 WASH5P-204ENST00000632292 975 ntBASIC24.33■■□□□ 1.49
TCRBV3S1A0A5B6 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TCRBV3S1A0A5B6 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.32■■□□□ 1.48
TCRBV3S1A0A5B6 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
TCRBV3S1A0A5B6 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.31■■□□□ 1.48
TCRBV3S1A0A5B6 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TCRBV3S1A0A5B6 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.31■■□□□ 1.48
TCRBV3S1A0A5B6 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TCRBV3S1A0A5B6 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TCRBV3S1A0A5B6 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TCRBV3S1A0A5B6 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.3■■□□□ 1.48
TCRBV3S1A0A5B6 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TCRBV3S1A0A5B6 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.3■■□□□ 1.48
TCRBV3S1A0A5B6 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TCRBV3S1A0A5B6 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
TCRBV3S1A0A5B6 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.28■■□□□ 1.48
TCRBV3S1A0A5B6 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TCRBV3S1A0A5B6 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
TCRBV3S1A0A5B6 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
TCRBV3S1A0A5B6 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
TCRBV3S1A0A5B6 LINC01003-201ENST00000564834 1764 ntBASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 AL449106.1-201ENST00000608517 1980 ntBASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 AP004833.2-201ENST00000532228 1454 ntBASIC24.26■■□□□ 1.47
TCRBV3S1A0A5B6 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
TCRBV3S1A0A5B6 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
TCRBV3S1A0A5B6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TCRBV3S1A0A5B6 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.25■■□□□ 1.47
TCRBV3S1A0A5B6 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.24■■□□□ 1.47
TCRBV3S1A0A5B6 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.24■■□□□ 1.47
TCRBV3S1A0A5B6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TCRBV3S1A0A5B6 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
TCRBV3S1A0A5B6 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
TCRBV3S1A0A5B6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TCRBV3S1A0A5B6 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
TCRBV3S1A0A5B6 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
TCRBV3S1A0A5B6 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC24.22■■□□□ 1.47
TCRBV3S1A0A5B6 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
TCRBV3S1A0A5B6 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.21■■□□□ 1.47
TCRBV3S1A0A5B6 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
TCRBV3S1A0A5B6 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.21■■□□□ 1.47
TCRBV3S1A0A5B6 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.2■■□□□ 1.46
TCRBV3S1A0A5B6 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
TCRBV3S1A0A5B6 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
TCRBV3S1A0A5B6 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TCRBV3S1A0A5B6 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TCRBV3S1A0A5B6 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
TCRBV3S1A0A5B6 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
TCRBV3S1A0A5B6 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
TCRBV3S1A0A5B6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TCRBV3S1A0A5B6 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
TCRBV3S1A0A5B6 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
TCRBV3S1A0A5B6 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms