Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC117500.6-201ENST00000624871 588 ntBASIC20.81■□□□□ 0.92
VCANP13611 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.81■□□□□ 0.92
VCANP13611 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.81■□□□□ 0.92
VCANP13611 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCANP13611 FAM220CP-201ENST00000395253 831 ntBASIC20.81■□□□□ 0.92
VCANP13611 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
VCANP13611 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.81■□□□□ 0.92
VCANP13611 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.81■□□□□ 0.92
VCANP13611 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.81■□□□□ 0.92
VCANP13611 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
VCANP13611 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
VCANP13611 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.81■□□□□ 0.92
VCANP13611 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.81■□□□□ 0.92
VCANP13611 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
VCANP13611 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.8■□□□□ 0.92
VCANP13611 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
VCANP13611 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VCANP13611 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VCANP13611 AC097488.1-201ENST00000507834 756 ntBASIC20.8■□□□□ 0.92
VCANP13611 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCANP13611 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.8■□□□□ 0.92
VCANP13611 SLC25A6P4-201ENST00000586535 553 ntBASIC20.8■□□□□ 0.92
VCANP13611 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VCANP13611 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VCANP13611 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.8■□□□□ 0.92
VCANP13611 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VCANP13611 PMS2P1-201ENST00000431037 1228 ntBASIC20.79■□□□□ 0.92
VCANP13611 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.79■□□□□ 0.92
VCANP13611 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VCANP13611 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VCANP13611 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VCANP13611 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.79■□□□□ 0.92
VCANP13611 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.79■□□□□ 0.92
VCANP13611 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VCANP13611 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
VCANP13611 PRELID1P1-202ENST00000567272 903 ntBASIC20.79■□□□□ 0.92
VCANP13611 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VCANP13611 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VCANP13611 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCANP13611 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VCANP13611 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCANP13611 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.78■□□□□ 0.92
VCANP13611 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.78■□□□□ 0.92
VCANP13611 AL732292.2-201ENST00000609649 430 ntBASIC20.78■□□□□ 0.92
VCANP13611 HYMAI.1-201ENST00000620949 238 ntBASIC20.78■□□□□ 0.92
VCANP13611 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.78■□□□□ 0.92
VCANP13611 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCANP13611 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VCANP13611 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.78■□□□□ 0.92
VCANP13611 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.78■□□□□ 0.92
VCANP13611 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.78■□□□□ 0.92
VCANP13611 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
VCANP13611 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCANP13611 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
VCANP13611 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCANP13611 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VCANP13611 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCANP13611 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCANP13611 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.77■□□□□ 0.92
VCANP13611 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.77■□□□□ 0.92
VCANP13611 MIR3652-201ENST00000579335 131 ntBASIC20.77■□□□□ 0.92
VCANP13611 MIR3180-1-201ENST00000580374 94 ntBASIC20.77■□□□□ 0.92
VCANP13611 MIR3180-3-201ENST00000584616 94 ntBASIC20.77■□□□□ 0.92
VCANP13611 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VCANP13611 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VCANP13611 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
VCANP13611 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.77■□□□□ 0.91
VCANP13611 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
VCANP13611 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.77■□□□□ 0.91
VCANP13611 AL445675.2-201ENST00000620291 557 ntBASIC20.77■□□□□ 0.91
VCANP13611 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
VCANP13611 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VCANP13611 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.76■□□□□ 0.91
VCANP13611 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.76■□□□□ 0.91
VCANP13611 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.76■□□□□ 0.91
VCANP13611 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.76■□□□□ 0.91
VCANP13611 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.76■□□□□ 0.91
VCANP13611 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
VCANP13611 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCANP13611 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms