RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 NISCHQ9Y2I1 1504 aa47.11■■■■■ 5.13
LSM4-203ENST00000593829 CCDC180Q9P1Z9 1646 aa41.78■■■■■ 4.28
LSM4-203ENST00000593829 ABCC9O60706 1549 aa40.72■■■■■ 4.11
LSM4-203ENST00000593829 DCAF8L2P0C7V8 631 aa39.34■■■■□ 3.89
LSM4-203ENST00000593829 ZCCHC6Q5VYS8 1495 aaKnown RBP39.28■■■■□ 3.88
LSM4-203ENST00000593829 NACADO15069 1562 aa39.26■■■■□ 3.88
LSM4-203ENST00000593829 RB1CC1Q8TDY2 1594 aa39.26■■■■□ 3.88
LSM4-203ENST00000593829 MYO15BQ96JP2 1530 aa39.09■■■■□ 3.85
LSM4-203ENST00000593829 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
LSM4-203ENST00000593829 UNC13AQ9UPW8 1703 aa38.31■■■■□ 3.72
LSM4-203ENST00000593829 SCRIBQ14160 1630 aa38.15■■■■□ 3.7
LSM4-203ENST00000593829 PABPN1Q86U42 306 aaKnown RBP eCLIP38.11■■■■□ 3.69
LSM4-203ENST00000593829 BICRAQ9NZM4 1560 aa38.04■■■■□ 3.68
LSM4-203ENST00000593829 SHROOM4Q9ULL8 1493 aa37.68■■■■□ 3.62
LSM4-203ENST00000593829 DNAJC5BQ9UF47 199 aa37.21■■■■□ 3.55
LSM4-203ENST00000593829 EIF4G1Q04637 1599 aaKnown RBP37.03■■■■□ 3.52
LSM4-203ENST00000593829 CC2D2AQ9P2K1 1620 aa36.83■■■■□ 3.49
LSM4-203ENST00000593829 CECR2Q9BXF3 1484 aa36.68■■■■□ 3.46
LSM4-203ENST00000593829 BAZ1AQ9NRL2 1556 aaPredicted RBP36.51■■■■□ 3.43
LSM4-203ENST00000593829 SMARCA4P51532 1647 aa36.51■■■■□ 3.43
LSM4-203ENST00000593829 MROH2BQ7Z745 1585 aa36.3■■■■□ 3.4
LSM4-203ENST00000593829 ATAD2BQ9ULI0 1458 aa36.28■■■■□ 3.4
LSM4-203ENST00000593829 SMARCA2P51531 1590 aa36.25■■■■□ 3.39
LSM4-203ENST00000593829 NCAPD3P42695 1498 aa36.24■■■■□ 3.39
LSM4-203ENST00000593829 PEG3Q9GZU2 1588 aa36.14■■■■□ 3.38
LSM4-203ENST00000593829 HMGXB3Q12766 1538 aa36.06■■■■□ 3.36
LSM4-203ENST00000593829 BAZ1BQ9UIG0 1483 aaKnown RBP36■■■■□ 3.35
LSM4-203ENST00000593829 RSF1Q96T23 1441 aaPredicted RBP35.98■■■■□ 3.35
LSM4-203ENST00000593829 WIZO95785 1651 aa35.92■■■■□ 3.34
LSM4-203ENST00000593829 TOP2AP11388 1531 aaKnown RBP35.56■■■■□ 3.28
LSM4-203ENST00000593829 NESP48681 1621 aa35.29■■■■□ 3.24
LSM4-203ENST00000593829 SUPT5HO00267 1087 aaKnown RBP35.24■■■■□ 3.23
LSM4-203ENST00000593829 LAMC3Q9Y6N6 1575 aa35.24■■■■□ 3.23
LSM4-203ENST00000593829 CADPSQ9ULU8 1353 aa35.2■■■■□ 3.23
LSM4-203ENST00000593829 CCDC88BA6NC98 1476 aa35.15■■■■□ 3.22
LSM4-203ENST00000593829 ERCC6Q03468 1493 aa35.11■■■■□ 3.21
LSM4-203ENST00000593829 PDS5BQ9NTI5 1447 aa35.02■■■■□ 3.2
LSM4-203ENST00000593829 CFTRP13569 1480 aa35.02■■■■□ 3.2
LSM4-203ENST00000593829 KIF21AQ7Z4S6 1674 aa34.85■■■■□ 3.17
LSM4-203ENST00000593829 FANCD2Q9BXW9 1451 aa34.78■■■■□ 3.16
LSM4-203ENST00000593829 CEP164Q9UPV0 1460 aa34.72■■■■□ 3.15
LSM4-203ENST00000593829 PRDM2Q13029 1718 aa34.71■■■■□ 3.15
LSM4-203ENST00000593829 THOC2Q8NI27 1593 aaKnown RBP34.7■■■■□ 3.14
LSM4-203ENST00000593829 CUX2O14529 1486 aa34.66■■■■□ 3.14
LSM4-203ENST00000593829 MRC2Q9UBG0 1479 aa34.63■■■■□ 3.13
LSM4-203ENST00000593829 WDR62O43379 1518 aa34.5■■■■□ 3.11
LSM4-203ENST00000593829 URB2Q14146 1524 aaKnown RBP34.41■■■■□ 3.1
LSM4-203ENST00000593829 ABCC8Q09428 1581 aa34.27■■■■□ 3.08
LSM4-203ENST00000593829 TOPBP1Q92547 1522 aa34.24■■■■□ 3.07
LSM4-203ENST00000593829 DNMBPQ6XZF7 1577 aa34.22■■■■□ 3.07
LSM4-203ENST00000593829 CUX1P39880 1505 aa34.05■■■■□ 3.04
LSM4-203ENST00000593829 IFT140Q96RY7 1462 aa33.99■■■■□ 3.03
LSM4-203ENST00000593829 POLA1P09884 1462 aaPredicted RBP33.96■■■■□ 3.03
LSM4-203ENST00000593829 WRNQ14191 1432 aaPredicted RBP eCLIP33.92■■■■□ 3.02
LSM4-203ENST00000593829 FGD5Q6ZNL6 1462 aa33.91■■■■□ 3.02
LSM4-203ENST00000593829 SOGA1O94964 1423 aa33.85■■■■□ 3.01
LSM4-203ENST00000593829 TARBP1Q13395 1621 aaKnown RBP33.84■■■■□ 3.01
LSM4-203ENST00000593829 RAD54L2Q9Y4B4 1467 aa33.82■■■■□ 3
LSM4-203ENST00000593829 ZNF608Q9ULD9 1512 aaPredicted RBP33.81■■■■□ 3
LSM4-203ENST00000593829 TOP2BQ02880 1626 aa33.81■■■■□ 3
LSM4-203ENST00000593829 SYNJ1O43426 1573 aa33.8■■■■□ 3
LSM4-203ENST00000593829 BIVM-ERCC5R4GMW8 1640 aa33.79■■■■□ 3
LSM4-203ENST00000593829 EIF4G3O43432 1585 aaKnown RBP33.67■■■□□ 2.98
LSM4-203ENST00000593829 AQRO60306 1485 aaKnown RBP eCLIP33.66■■■□□ 2.985e-8■■□□□ 13.7
LSM4-203ENST00000593829 TDRD9Q8NDG6 1382 aaKnown RBP33.63■■■□□ 2.97
LSM4-203ENST00000593829 ABCA10Q8WWZ4 1543 aa33.6■■■□□ 2.97
LSM4-203ENST00000593829 WDR97A6NE52 1622 aa33.59■■■□□ 2.97
LSM4-203ENST00000593829 GAPVD1Q14C86 1478 aa33.46■■■□□ 2.95
LSM4-203ENST00000593829 GRIN2BQ13224 1484 aa33.42■■■□□ 2.94
LSM4-203ENST00000593829 ABCA5Q8WWZ7 1642 aa33.42■■■□□ 2.94
LSM4-203ENST00000593829 DNAJC5Q9H3Z4 198 aa33.39■■■□□ 2.94
LSM4-203ENST00000593829 SNAPC4Q5SXM2 1469 aa33.34■■■□□ 2.93
LSM4-203ENST00000593829 PBRM1Q86U86 1689 aa33.33■■■□□ 2.93
LSM4-203ENST00000593829 MAGI1Q96QZ7 1491 aaPredicted RBP33.31■■■□□ 2.92
LSM4-203ENST00000593829 OSCARQ8IYS5 282 aa33.3■■■□□ 2.92
LSM4-203ENST00000593829 TRIM41Q8WV44 630 aa33.29■■■□□ 2.92
LSM4-203ENST00000593829 FBLN2P98095 1184 aa33.25■■■□□ 2.91
LSM4-203ENST00000593829 KIF27Q86VH2 1401 aa33.21■■■□□ 2.91
LSM4-203ENST00000593829 ERICH3Q5RHP9 1530 aa33.2■■■□□ 2.9
LSM4-203ENST00000593829 CHD1O14646 1710 aa33.2■■■□□ 2.9
LSM4-203ENST00000593829 CHMP7Q8WUX9 453 aaPredicted RBP33.19■■■□□ 2.9
LSM4-203ENST00000593829 SYNJ2O15056 1496 aa33.18■■■□□ 2.9
LSM4-203ENST00000593829 ADAMTS12P58397 1594 aa33.09■■■□□ 2.89
LSM4-203ENST00000593829 FHAD1B1AJZ9 1412 aa33.08■■■□□ 2.89
LSM4-203ENST00000593829 IGF1RP08069 1367 aa33.05■■■□□ 2.88
LSM4-203ENST00000593829 CHIC1Q5VXU3 224 aa32.99■■■□□ 2.87
LSM4-203ENST00000593829 GRIN2AQ12879 1464 aa32.99■■■□□ 2.87
LSM4-203ENST00000593829 RUSC2Q8N2Y8 1516 aa32.94■■■□□ 2.86
LSM4-203ENST00000593829 CUL7Q14999 1698 aa32.93■■■□□ 2.86
LSM4-203ENST00000593829 CARMIL1Q5VZK9 1371 aa32.87■■■□□ 2.85
LSM4-203ENST00000593829 CLASP1Q7Z460 1538 aa32.85■■■□□ 2.85
LSM4-203ENST00000593829 NUP160Q12769 1436 aa32.83■■■□□ 2.85
LSM4-203ENST00000593829 CEP170Q5SW79 1584 aa32.79■■■□□ 2.84
LSM4-203ENST00000593829 ARHGEF11O15085 1522 aa32.7■■■□□ 2.83
LSM4-203ENST00000593829 EEA1Q15075 1411 aa32.7■■■□□ 2.83
LSM4-203ENST00000593829 RAPGEF2Q9Y4G8 1499 aa32.68■■■□□ 2.82
LSM4-203ENST00000593829 RIMBP3CA6NJZ7 1639 aa32.68■■■□□ 2.82
LSM4-203ENST00000593829 RIMBP3BA6NNM3 1639 aa32.68■■■□□ 2.82
LSM4-203ENST00000593829 RIMBP3Q9UFD9 1639 aa32.68■■■□□ 2.82
LSM4-203ENST00000593829 CSRNP3Q8WYN3 585 aa32.65■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms