RNA–Protein interactions for RNA: ENST00000622383.1

NKX2-3-202, Transcript of NK2 homeobox 3, humanhuman

TSL 5 BASIC

Gene NKX2-3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3-202ENST00000622383 NISCHQ9Y2I1 1504 aa49.16■■■■■ 5.46
NKX2-3-202ENST00000622383 CCDC180Q9P1Z9 1646 aa42.17■■■■■ 4.34
NKX2-3-202ENST00000622383 ZCCHC6Q5VYS8 1495 aaKnown RBP41.5■■■■■ 4.23
NKX2-3-202ENST00000622383 SHROOM4Q9ULL8 1493 aa41.13■■■■■ 4.18
NKX2-3-202ENST00000622383 DCAF8L2P0C7V8 631 aa40.53■■■■■ 4.08
NKX2-3-202ENST00000622383 DCAF1Q9Y4B6 1507 aa40.51■■■■■ 4.08
NKX2-3-202ENST00000622383 SUPT5HO00267 1087 aaKnown RBP40.06■■■■■ 4
NKX2-3-202ENST00000622383 MYO15BQ96JP2 1530 aa39.6■■■■□ 3.93
NKX2-3-202ENST00000622383 ABCC9O60706 1549 aa39.28■■■■□ 3.88
NKX2-3-202ENST00000622383 SCRIBQ14160 1630 aa39.19■■■■□ 3.86
NKX2-3-202ENST00000622383 NACADO15069 1562 aa39.1■■■■□ 3.85
NKX2-3-202ENST00000622383 CHIC1Q5VXU3 224 aa38.84■■■■□ 3.81
NKX2-3-202ENST00000622383 RSF1Q96T23 1441 aaPredicted RBP38.64■■■■□ 3.78
NKX2-3-202ENST00000622383 RB1CC1Q8TDY2 1594 aa38.53■■■■□ 3.76
NKX2-3-202ENST00000622383 CECR2Q9BXF3 1484 aa38.28■■■■□ 3.72
NKX2-3-202ENST00000622383 MROH2BQ7Z745 1585 aa38.12■■■■□ 3.69
NKX2-3-202ENST00000622383 UNC13AQ9UPW8 1703 aa37.86■■■■□ 3.65
NKX2-3-202ENST00000622383 WIZO95785 1651 aa37.84■■■■□ 3.65
NKX2-3-202ENST00000622383 BAZ1AQ9NRL2 1556 aaPredicted RBP37.81■■■■□ 3.64
NKX2-3-202ENST00000622383 SMARCA4P51532 1647 aa37.54■■■■□ 3.6
NKX2-3-202ENST00000622383 LOC105371045A0A1W2PR82 267 aa37.53■■■■□ 3.6
NKX2-3-202ENST00000622383 BICRAQ9NZM4 1560 aa37.5■■■■□ 3.59
NKX2-3-202ENST00000622383 TRIM41Q8WV44 630 aa37.48■■■■□ 3.59
NKX2-3-202ENST00000622383 PABPN1Q86U42 306 aaKnown RBP eCLIP37.38■■■■□ 3.58
NKX2-3-202ENST00000622383 TOP2AP11388 1531 aaKnown RBP37.36■■■■□ 3.57
NKX2-3-202ENST00000622383 EIF4G1Q04637 1599 aaKnown RBP37.23■■■■□ 3.55
NKX2-3-202ENST00000622383 CCDC88BA6NC98 1476 aa37.13■■■■□ 3.53
NKX2-3-202ENST00000622383 SMARCA2P51531 1590 aa37.1■■■■□ 3.53
NKX2-3-202ENST00000622383 FAM9AQ8IZU1 332 aaPredicted RBP36.98■■■■□ 3.51
NKX2-3-202ENST00000622383 PEG3Q9GZU2 1588 aa36.97■■■■□ 3.51
NKX2-3-202ENST00000622383 PCGF6Q9BYE7 350 aa36.87■■■■□ 3.49
NKX2-3-202ENST00000622383 ATAD2BQ9ULI0 1458 aa36.73■■■■□ 3.47
NKX2-3-202ENST00000622383 ABCC8Q09428 1581 aa36.73■■■■□ 3.47
NKX2-3-202ENST00000622383 HRCP23327 699 aa36.58■■■■□ 3.45
NKX2-3-202ENST00000622383 BAZ1BQ9UIG0 1483 aaKnown RBP36.55■■■■□ 3.44
NKX2-3-202ENST00000622383 EHMT2Q96KQ7 1210 aa36.53■■■■□ 3.44
NKX2-3-202ENST00000622383 TRIM26Q12899 539 aaPredicted RBP36.46■■■■□ 3.43
NKX2-3-202ENST00000622383 SOGA1O94964 1423 aa36.3■■■■□ 3.4
NKX2-3-202ENST00000622383 WRNQ14191 1432 aaPredicted RBP eCLIP36.29■■■■□ 3.4
NKX2-3-202ENST00000622383 EEA1Q15075 1411 aa36.19■■■■□ 3.38
NKX2-3-202ENST00000622383 NCAPD3P42695 1498 aa36.18■■■■□ 3.38
NKX2-3-202ENST00000622383 HMGXB3Q12766 1538 aa36.14■■■■□ 3.38
NKX2-3-202ENST00000622383 RUSC2Q8N2Y8 1516 aa36.14■■■■□ 3.38
NKX2-3-202ENST00000622383 SYNJ1O43426 1573 aa36.12■■■■□ 3.37
NKX2-3-202ENST00000622383 CSRNP3Q8WYN3 585 aa36.07■■■■□ 3.36
NKX2-3-202ENST00000622383 TNIKQ9UKE5 1360 aa35.94■■■■□ 3.34
NKX2-3-202ENST00000622383 CEP162Q5TB80 1403 aa35.88■■■■□ 3.33
NKX2-3-202ENST00000622383 GOLGA3Q08378 1498 aa35.82■■■■□ 3.32
NKX2-3-202ENST00000622383 TOP2BQ02880 1626 aa35.8■■■■□ 3.32
NKX2-3-202ENST00000622383 PPARGC1BQ86YN6 1023 aaKnown RBP35.76■■■■□ 3.32
NKX2-3-202ENST00000622383 UBTFP17480 764 aaKnown RBP35.74■■■■□ 3.31
NKX2-3-202ENST00000622383 CEP164Q9UPV0 1460 aa35.7■■■■□ 3.31
NKX2-3-202ENST00000622383 BIVM-ERCC5R4GMW8 1640 aa35.7■■■■□ 3.31
NKX2-3-202ENST00000622383 CFTRP13569 1480 aa35.7■■■■□ 3.31
NKX2-3-202ENST00000622383 KIF21BO75037 1637 aa35.69■■■■□ 3.3
NKX2-3-202ENST00000622383 CUX1P39880 1505 aa35.55■■■■□ 3.28
NKX2-3-202ENST00000622383 CC2D2AQ9P2K1 1620 aa35.47■■■■□ 3.27
NKX2-3-202ENST00000622383 RAPGEF2Q9Y4G8 1499 aa35.47■■■■□ 3.27
NKX2-3-202ENST00000622383 ZEB1P37275 1124 aaPredicted RBP35.43■■■■□ 3.26
NKX2-3-202ENST00000622383 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.25
NKX2-3-202ENST00000622383 PRDM2Q13029 1718 aa35.36■■■■□ 3.25
NKX2-3-202ENST00000622383 CLIP1P30622 1438 aa35.34■■■■□ 3.25
NKX2-3-202ENST00000622383 PRXQ9BXM0 1461 aa35.3■■■■□ 3.24
NKX2-3-202ENST00000622383 ERICH3Q5RHP9 1530 aa35.25■■■■□ 3.23
NKX2-3-202ENST00000622383 KIF27Q86VH2 1401 aa35.23■■■■□ 3.23
NKX2-3-202ENST00000622383 TTBK1Q5TCY1 1321 aaPredicted RBP35.22■■■■□ 3.23
NKX2-3-202ENST00000622383 VPS8Q8N3P4 1428 aa35.16■■■■□ 3.22
NKX2-3-202ENST00000622383 RANGAP1P46060 587 aaPredicted RBP35.01■■■■□ 3.19
NKX2-3-202ENST00000622383 FANCD2Q9BXW9 1451 aa35■■■■□ 3.19
NKX2-3-202ENST00000622383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35■■■■□ 3.19
NKX2-3-202ENST00000622383 FGD5Q6ZNL6 1462 aa34.98■■■■□ 3.19
NKX2-3-202ENST00000622383 CUX2O14529 1486 aa34.97■■■■□ 3.19
NKX2-3-202ENST00000622383 IGF1RP08069 1367 aa34.92■■■■□ 3.18
NKX2-3-202ENST00000622383 ARAP1Q96P48 1450 aa34.89■■■■□ 3.18
NKX2-3-202ENST00000622383 CCER1Q8TC90 406 aaPredicted RBP34.89■■■■□ 3.18
NKX2-3-202ENST00000622383 NESP48681 1621 aa34.86■■■■□ 3.17
NKX2-3-202ENST00000622383 APLP2Q06481 763 aa34.82■■■■□ 3.16
NKX2-3-202ENST00000622383 DNMBPQ6XZF7 1577 aa34.79■■■■□ 3.16
NKX2-3-202ENST00000622383 TOPBP1Q92547 1522 aa34.73■■■■□ 3.15
NKX2-3-202ENST00000622383 CARMIL1Q5VZK9 1371 aa34.73■■■■□ 3.15
NKX2-3-202ENST00000622383 LAMC3Q9Y6N6 1575 aa34.7■■■■□ 3.14
NKX2-3-202ENST00000622383 ARHGAP35Q9NRY4 1499 aa34.69■■■■□ 3.14
NKX2-3-202ENST00000622383 POLA1P09884 1462 aaPredicted RBP34.67■■■■□ 3.14
NKX2-3-202ENST00000622383 RAD54L2Q9Y4B4 1467 aa34.65■■■■□ 3.14
NKX2-3-202ENST00000622383 ABCA10Q8WWZ4 1543 aa34.64■■■■□ 3.14
NKX2-3-202ENST00000622383 DNAJC5BQ9UF47 199 aa34.63■■■■□ 3.13
NKX2-3-202ENST00000622383 HNRNPUL2Q1KMD3 747 aaKnown RBP34.54■■■■□ 3.12
NKX2-3-202ENST00000622383 URB2Q14146 1524 aaKnown RBP34.54■■■■□ 3.12
NKX2-3-202ENST00000622383 KANK4Q5T7N3 995 aaPredicted RBP34.52■■■■□ 3.12
NKX2-3-202ENST00000622383 PDS5BQ9NTI5 1447 aa34.47■■■■□ 3.11
NKX2-3-202ENST00000622383 WDR97A6NE52 1622 aa34.36■■■■□ 3.09
NKX2-3-202ENST00000622383 CUL7Q14999 1698 aa34.34■■■■□ 3.09
NKX2-3-202ENST00000622383 RRBP1Q9P2E9 1410 aaKnown RBP34.28■■■■□ 3.08
NKX2-3-202ENST00000622383 KIF21AQ7Z4S6 1674 aa34.28■■■■□ 3.08
NKX2-3-202ENST00000622383 MAP3K1Q13233 1512 aa34.26■■■■□ 3.07
NKX2-3-202ENST00000622383 ABCA5Q8WWZ7 1642 aa34.25■■■■□ 3.07
NKX2-3-202ENST00000622383 TDRD9Q8NDG6 1382 aaKnown RBP34.24■■■■□ 3.07
NKX2-3-202ENST00000622383 TIAM1Q13009 1591 aa34.21■■■■□ 3.07
NKX2-3-202ENST00000622383 FHAD1B1AJZ9 1412 aa34.18■■■■□ 3.06
NKX2-3-202ENST00000622383 GAPVD1Q14C86 1478 aa34.18■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms