RNA–Protein interactions for RNA: ENST00000395793.7

CXCL12-204, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5 BASIC

Gene CXCL12, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-204ENST00000395793 NISCHQ9Y2I1 1504 aa45.15■■■■■ 4.82
CXCL12-204ENST00000395793 CCDC180Q9P1Z9 1646 aa40.45■■■■■ 4.07
CXCL12-204ENST00000395793 ABCC9O60706 1549 aa40.17■■■■■ 4.02
CXCL12-204ENST00000395793 RB1CC1Q8TDY2 1594 aa38.32■■■■□ 3.73
CXCL12-204ENST00000395793 NACADO15069 1562 aa38.12■■■■□ 3.69
CXCL12-204ENST00000395793 DCAF8L2P0C7V8 631 aa37.85■■■■□ 3.65
CXCL12-204ENST00000395793 MYO15BQ96JP2 1530 aa37.67■■■■□ 3.62
CXCL12-204ENST00000395793 UNC13AQ9UPW8 1703 aa37.61■■■■□ 3.61
CXCL12-204ENST00000395793 ZCCHC6Q5VYS8 1495 aaKnown RBP37.5■■■■□ 3.59
CXCL12-204ENST00000395793 DNAJC5BQ9UF47 199 aa37.48■■■■□ 3.59
CXCL12-204ENST00000395793 PABPN1Q86U42 306 aaKnown RBP eCLIP37.39■■■■□ 3.58
CXCL12-204ENST00000395793 DCAF1Q9Y4B6 1507 aa37.3■■■■□ 3.56
CXCL12-204ENST00000395793 BICRAQ9NZM4 1560 aa37.29■■■■□ 3.56
CXCL12-204ENST00000395793 SCRIBQ14160 1630 aa36.88■■■■□ 3.49
CXCL12-204ENST00000395793 SHROOM4Q9ULL8 1493 aa36.7■■■■□ 3.47
CXCL12-204ENST00000395793 CC2D2AQ9P2K1 1620 aa36.33■■■■□ 3.41
CXCL12-204ENST00000395793 EIF4G1Q04637 1599 aaKnown RBP36.31■■■■□ 3.4
CXCL12-204ENST00000395793 CECR2Q9BXF3 1484 aa36.13■■■■□ 3.37
CXCL12-204ENST00000395793 SMARCA4P51532 1647 aa35.21■■■■□ 3.23
CXCL12-204ENST00000395793 NCAPD3P42695 1498 aa35.18■■■■□ 3.22
CXCL12-204ENST00000395793 ATAD2BQ9ULI0 1458 aa35.14■■■■□ 3.22
CXCL12-204ENST00000395793 SMARCA2P51531 1590 aa35.03■■■■□ 3.2
CXCL12-204ENST00000395793 BAZ1AQ9NRL2 1556 aaPredicted RBP35■■■■□ 3.19
CXCL12-204ENST00000395793 HMGXB3Q12766 1538 aa34.98■■■■□ 3.19
CXCL12-204ENST00000395793 PEG3Q9GZU2 1588 aa34.85■■■■□ 3.17
CXCL12-204ENST00000395793 MROH2BQ7Z745 1585 aa34.83■■■■□ 3.17
CXCL12-204ENST00000395793 BAZ1BQ9UIG0 1483 aaKnown RBP34.78■■■■□ 3.16
CXCL12-204ENST00000395793 NESP48681 1621 aa34.62■■■■□ 3.13
CXCL12-204ENST00000395793 ERCC6Q03468 1493 aa34.6■■■■□ 3.13
CXCL12-204ENST00000395793 CUX2O14529 1486 aa34.48■■■■□ 3.11
CXCL12-204ENST00000395793 WIZO95785 1651 aa34.44■■■■□ 3.1
CXCL12-204ENST00000395793 LAMC3Q9Y6N6 1575 aa34.36■■■■□ 3.09
CXCL12-204ENST00000395793 THOC2Q8NI27 1593 aaKnown RBP34.26■■■■□ 3.07
CXCL12-204ENST00000395793 KIF21AQ7Z4S6 1674 aa34.22■■■■□ 3.07
CXCL12-204ENST00000395793 RSF1Q96T23 1441 aaPredicted RBP34.15■■■■□ 3.06
CXCL12-204ENST00000395793 DNAJC5Q9H3Z4 198 aa34.14■■■■□ 3.06
CXCL12-204ENST00000395793 CADPSQ9ULU8 1353 aa34.1■■■■□ 3.05
CXCL12-204ENST00000395793 PDS5BQ9NTI5 1447 aa34.08■■■■□ 3.05
CXCL12-204ENST00000395793 TOP2AP11388 1531 aaKnown RBP33.99■■■■□ 3.03
CXCL12-204ENST00000395793 MRC2Q9UBG0 1479 aa33.85■■■■□ 3.01
CXCL12-204ENST00000395793 CFTRP13569 1480 aa33.8■■■■□ 3
CXCL12-204ENST00000395793 WDR62O43379 1518 aa33.79■■■■□ 3
CXCL12-204ENST00000395793 CEP164Q9UPV0 1460 aa33.76■■■□□ 2.99
CXCL12-204ENST00000395793 FANCD2Q9BXW9 1451 aa33.75■■■□□ 2.99
CXCL12-204ENST00000395793 CCDC88BA6NC98 1476 aa33.58■■■□□ 2.97
CXCL12-204ENST00000395793 PRDM2Q13029 1718 aa33.58■■■□□ 2.97
CXCL12-204ENST00000395793 URB2Q14146 1524 aaKnown RBP33.5■■■□□ 2.95
CXCL12-204ENST00000395793 TOPBP1Q92547 1522 aa33.16■■■□□ 2.9
CXCL12-204ENST00000395793 DNMBPQ6XZF7 1577 aa33.06■■■□□ 2.88
CXCL12-204ENST00000395793 IFT140Q96RY7 1462 aa33.05■■■□□ 2.88
CXCL12-204ENST00000395793 ZNF608Q9ULD9 1512 aaPredicted RBP33.04■■■□□ 2.88
CXCL12-204ENST00000395793 ABCC8Q09428 1581 aa33.01■■■□□ 2.88
CXCL12-204ENST00000395793 EIF4G3O43432 1585 aaKnown RBP32.9■■■□□ 2.86
CXCL12-204ENST00000395793 TARBP1Q13395 1621 aaKnown RBP32.89■■■□□ 2.86
CXCL12-204ENST00000395793 OSCARQ8IYS5 282 aa32.86■■■□□ 2.85
CXCL12-204ENST00000395793 POLA1P09884 1462 aaPredicted RBP32.84■■■□□ 2.85
CXCL12-204ENST00000395793 SUPT5HO00267 1087 aaKnown RBP32.74■■■□□ 2.83
CXCL12-204ENST00000395793 TRIM41Q8WV44 630 aa32.74■■■□□ 2.83
CXCL12-204ENST00000395793 AQRO60306 1485 aaKnown RBP eCLIP32.74■■■□□ 2.83
CXCL12-204ENST00000395793 RAD54L2Q9Y4B4 1467 aa32.72■■■□□ 2.83
CXCL12-204ENST00000395793 CUX1P39880 1505 aa32.71■■■□□ 2.83
CXCL12-204ENST00000395793 FGD5Q6ZNL6 1462 aa32.67■■■□□ 2.82
CXCL12-204ENST00000395793 CHD1O14646 1710 aa32.63■■■□□ 2.81
CXCL12-204ENST00000395793 SOGA1O94964 1423 aa32.62■■■□□ 2.81
CXCL12-204ENST00000395793 RIMBP3CA6NJZ7 1639 aa32.57■■■□□ 2.8
CXCL12-204ENST00000395793 RIMBP3BA6NNM3 1639 aa32.57■■■□□ 2.8
CXCL12-204ENST00000395793 RIMBP3Q9UFD9 1639 aa32.57■■■□□ 2.8
CXCL12-204ENST00000395793 TDRD9Q8NDG6 1382 aaKnown RBP32.55■■■□□ 2.8
CXCL12-204ENST00000395793 WDR97A6NE52 1622 aa32.51■■■□□ 2.8
CXCL12-204ENST00000395793 ARHGEF11O15085 1522 aa32.46■■■□□ 2.79
CXCL12-204ENST00000395793 SNAPC4Q5SXM2 1469 aa32.42■■■□□ 2.78
CXCL12-204ENST00000395793 FBLN2P98095 1184 aa32.37■■■□□ 2.77
CXCL12-204ENST00000395793 GRIN2BQ13224 1484 aa32.34■■■□□ 2.77
CXCL12-204ENST00000395793 PBRM1Q86U86 1689 aa32.33■■■□□ 2.77
CXCL12-204ENST00000395793 MAGI1Q96QZ7 1491 aaPredicted RBP32.32■■■□□ 2.76
CXCL12-204ENST00000395793 ABCA10Q8WWZ4 1543 aa32.3■■■□□ 2.76
CXCL12-204ENST00000395793 ABCA5Q8WWZ7 1642 aa32.29■■■□□ 2.76
CXCL12-204ENST00000395793 BIVM-ERCC5R4GMW8 1640 aa32.26■■■□□ 2.76
CXCL12-204ENST00000395793 GAPVD1Q14C86 1478 aa32.25■■■□□ 2.75
CXCL12-204ENST00000395793 CLASP1Q7Z460 1538 aa32.24■■■□□ 2.75
CXCL12-204ENST00000395793 SYNJ1O43426 1573 aa32.24■■■□□ 2.75
CXCL12-204ENST00000395793 TOP2BQ02880 1626 aa32.23■■■□□ 2.75
CXCL12-204ENST00000395793 SYNJ2O15056 1496 aa32.21■■■□□ 2.75
CXCL12-204ENST00000395793 WRNQ14191 1432 aaPredicted RBP eCLIP32.18■■■□□ 2.74
CXCL12-204ENST00000395793 ARAP1Q96P48 1450 aa32.18■■■□□ 2.74
CXCL12-204ENST00000395793 CHMP7Q8WUX9 453 aaPredicted RBP32.16■■■□□ 2.74
CXCL12-204ENST00000395793 CYB5RLQ6IPT4 315 aa32.11■■■□□ 2.73
CXCL12-204ENST00000395793 ADAMTS12P58397 1594 aa32.02■■■□□ 2.72
CXCL12-204ENST00000395793 GRIN2AQ12879 1464 aa31.95■■■□□ 2.7
CXCL12-204ENST00000395793 ERICH3Q5RHP9 1530 aa31.89■■■□□ 2.7
CXCL12-204ENST00000395793 CEP170Q5SW79 1584 aa31.89■■■□□ 2.7
CXCL12-204ENST00000395793 FHAD1B1AJZ9 1412 aa31.84■■■□□ 2.69
CXCL12-204ENST00000395793 NUP160Q12769 1436 aa31.84■■■□□ 2.69
CXCL12-204ENST00000395793 ERCC6L2Q5T890 1561 aa31.79■■■□□ 2.68
CXCL12-204ENST00000395793 SHROOM2Q13796 1616 aa31.72■■■□□ 2.67
CXCL12-204ENST00000395793 TRHP20396 242 aaPredicted RBP31.63■■■□□ 2.65
CXCL12-204ENST00000395793 RUSC2Q8N2Y8 1516 aa31.57■■■□□ 2.64
CXCL12-204ENST00000395793 KIF27Q86VH2 1401 aa31.52■■■□□ 2.64
CXCL12-204ENST00000395793 IGF1RP08069 1367 aa31.51■■■□□ 2.63
CXCL12-204ENST00000395793 CUL7Q14999 1698 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms