RNA–Protein interactions for RNA: ENST00000536344.5

TRIM3-214, Transcript of tripartite motif containing 3, humanhuman

TSL 2 BASIC

Gene TRIM3, Length 2,704 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-214ENST00000536344 NISCHQ9Y2I1 1504 aa46.15■■■■■ 4.98
TRIM3-214ENST00000536344 CCDC180Q9P1Z9 1646 aa39.65■■■■□ 3.94
TRIM3-214ENST00000536344 DCAF8L2P0C7V8 631 aa38.94■■■■□ 3.82
TRIM3-214ENST00000536344 SHROOM4Q9ULL8 1493 aa38.85■■■■□ 3.81
TRIM3-214ENST00000536344 ZCCHC6Q5VYS8 1495 aaKnown RBP38.79■■■■□ 3.8
TRIM3-214ENST00000536344 ABCC9O60706 1549 aa37.95■■■■□ 3.67
TRIM3-214ENST00000536344 DCAF1Q9Y4B6 1507 aa37.73■■■■□ 3.63
TRIM3-214ENST00000536344 SUPT5HO00267 1087 aaKnown RBP37.57■■■■□ 3.6
TRIM3-214ENST00000536344 SCRIBQ14160 1630 aa37.2■■■■□ 3.55
TRIM3-214ENST00000536344 MYO15BQ96JP2 1530 aa37.01■■■■□ 3.52
TRIM3-214ENST00000536344 NACADO15069 1562 aa36.96■■■■□ 3.51
TRIM3-214ENST00000536344 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
TRIM3-214ENST00000536344 CECR2Q9BXF3 1484 aa36.19■■■■□ 3.38
TRIM3-214ENST00000536344 PABPN1Q86U42 306 aaKnown RBP eCLIP36.14■■■■□ 3.38
TRIM3-214ENST00000536344 RSF1Q96T23 1441 aaPredicted RBP36.14■■■■□ 3.38
TRIM3-214ENST00000536344 UNC13AQ9UPW8 1703 aa36.11■■■■□ 3.37
TRIM3-214ENST00000536344 MROH2BQ7Z745 1585 aa35.9■■■■□ 3.34
TRIM3-214ENST00000536344 CHIC1Q5VXU3 224 aa35.84■■■■□ 3.33
TRIM3-214ENST00000536344 BICRAQ9NZM4 1560 aa35.7■■■■□ 3.31
TRIM3-214ENST00000536344 WIZO95785 1651 aa35.67■■■■□ 3.3
TRIM3-214ENST00000536344 HRCP23327 699 aa35.56■■■■□ 3.28
TRIM3-214ENST00000536344 BAZ1AQ9NRL2 1556 aaPredicted RBP35.51■■■■□ 3.28
TRIM3-214ENST00000536344 SMARCA4P51532 1647 aa35.39■■■■□ 3.26
TRIM3-214ENST00000536344 PPARGC1BQ86YN6 1023 aaKnown RBP35.15■■■■□ 3.22
TRIM3-214ENST00000536344 TOP2AP11388 1531 aaKnown RBP34.99■■■■□ 3.19
TRIM3-214ENST00000536344 TRIM41Q8WV44 630 aa34.98■■■■□ 3.19
TRIM3-214ENST00000536344 PCGF6Q9BYE7 350 aa34.95■■■■□ 3.19
TRIM3-214ENST00000536344 CCDC88BA6NC98 1476 aa34.9■■■■□ 3.18
TRIM3-214ENST00000536344 LOC105371045A0A1W2PR82 267 aa34.88■■■■□ 3.17
TRIM3-214ENST00000536344 FAM9AQ8IZU1 332 aaPredicted RBP34.81■■■■□ 3.16
TRIM3-214ENST00000536344 SMARCA2P51531 1590 aa34.8■■■■□ 3.16
TRIM3-214ENST00000536344 ATAD2BQ9ULI0 1458 aa34.77■■■■□ 3.16
TRIM3-214ENST00000536344 EHMT2Q96KQ7 1210 aa34.68■■■■□ 3.14
TRIM3-214ENST00000536344 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
TRIM3-214ENST00000536344 BAZ1BQ9UIG0 1483 aaKnown RBP34.64■■■■□ 3.14
TRIM3-214ENST00000536344 EIF4G1Q04637 1599 aaKnown RBP34.61■■■■□ 3.13
TRIM3-214ENST00000536344 ABCC8Q09428 1581 aa34.53■■■■□ 3.12
TRIM3-214ENST00000536344 NCAPD3P42695 1498 aa34.22■■■■□ 3.07
TRIM3-214ENST00000536344 PELP1Q8IZL8 1130 aaKnown RBP34.17■■■■□ 3.06
TRIM3-214ENST00000536344 HMGXB3Q12766 1538 aa34.09■■■■□ 3.05
TRIM3-214ENST00000536344 CC2D2AQ9P2K1 1620 aa34.07■■■■□ 3.04
TRIM3-214ENST00000536344 WRNQ14191 1432 aaPredicted RBP eCLIP34■■■■□ 3.03
TRIM3-214ENST00000536344 SOGA1O94964 1423 aa33.98■■■■□ 3.03
TRIM3-214ENST00000536344 RUSC2Q8N2Y8 1516 aa33.9■■■■□ 3.02
TRIM3-214ENST00000536344 SYNJ1O43426 1573 aa33.88■■■■□ 3.01
TRIM3-214ENST00000536344 SCAF1Q9H7N4 1312 aaKnown RBP33.86■■■■□ 3.01
TRIM3-214ENST00000536344 DNAJC5BQ9UF47 199 aa33.75■■■□□ 2.99
TRIM3-214ENST00000536344 CFTRP13569 1480 aa33.67■■■□□ 2.98
TRIM3-214ENST00000536344 CSRNP3Q8WYN3 585 aa33.65■■■□□ 2.98
TRIM3-214ENST00000536344 CADPSQ9ULU8 1353 aa33.55■■■□□ 2.96
TRIM3-214ENST00000536344 TRIM26Q12899 539 aaPredicted RBP33.55■■■□□ 2.96
TRIM3-214ENST00000536344 UBTFP17480 764 aaKnown RBP33.53■■■□□ 2.96
TRIM3-214ENST00000536344 TOP2BQ02880 1626 aa33.48■■■□□ 2.95
TRIM3-214ENST00000536344 CUX1P39880 1505 aa33.47■■■□□ 2.95
TRIM3-214ENST00000536344 NESP48681 1621 aa33.47■■■□□ 2.95
TRIM3-214ENST00000536344 EEA1Q15075 1411 aa33.39■■■□□ 2.94
TRIM3-214ENST00000536344 RANGAP1P46060 587 aaPredicted RBP33.35■■■□□ 2.93
TRIM3-214ENST00000536344 BIVM-ERCC5R4GMW8 1640 aa33.34■■■□□ 2.93
TRIM3-214ENST00000536344 PRDM2Q13029 1718 aa33.26■■■□□ 2.92
TRIM3-214ENST00000536344 FANCD2Q9BXW9 1451 aa33.25■■■□□ 2.91
TRIM3-214ENST00000536344 CEP162Q5TB80 1403 aa33.24■■■□□ 2.91
TRIM3-214ENST00000536344 TTBK1Q5TCY1 1321 aaPredicted RBP33.23■■■□□ 2.91
TRIM3-214ENST00000536344 GOLGA3Q08378 1498 aa33.21■■■□□ 2.91
TRIM3-214ENST00000536344 TNIKQ9UKE5 1360 aa33.18■■■□□ 2.9
TRIM3-214ENST00000536344 RAPGEF2Q9Y4G8 1499 aa33.17■■■□□ 2.9
TRIM3-214ENST00000536344 CEP164Q9UPV0 1460 aa33.13■■■□□ 2.89
TRIM3-214ENST00000536344 ZEB1P37275 1124 aaPredicted RBP33.13■■■□□ 2.89
TRIM3-214ENST00000536344 FGD5Q6ZNL6 1462 aa33.08■■■□□ 2.89
TRIM3-214ENST00000536344 KIF27Q86VH2 1401 aa33.03■■■□□ 2.88
TRIM3-214ENST00000536344 KIF21BO75037 1637 aa33.02■■■□□ 2.88
TRIM3-214ENST00000536344 CUX2O14529 1486 aa33.02■■■□□ 2.88
TRIM3-214ENST00000536344 RAD54L2Q9Y4B4 1467 aa32.95■■■□□ 2.87
TRIM3-214ENST00000536344 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
TRIM3-214ENST00000536344 NEUROD1Q13562 356 aa32.9■■■□□ 2.86
TRIM3-214ENST00000536344 TOPBP1Q92547 1522 aa32.9■■■□□ 2.86
TRIM3-214ENST00000536344 CLIP1P30622 1438 aa32.86■■■□□ 2.85
TRIM3-214ENST00000536344 PRXQ9BXM0 1461 aa32.86■■■□□ 2.85
TRIM3-214ENST00000536344 ACIN1Q9UKV3 1341 aaKnown RBP32.85■■■□□ 2.85
TRIM3-214ENST00000536344 URB2Q14146 1524 aaKnown RBP32.84■■■□□ 2.85
TRIM3-214ENST00000536344 DNMBPQ6XZF7 1577 aa32.83■■■□□ 2.85
TRIM3-214ENST00000536344 POLA1P09884 1462 aaPredicted RBP32.82■■■□□ 2.84
TRIM3-214ENST00000536344 PDS5BQ9NTI5 1447 aa32.82■■■□□ 2.84
TRIM3-214ENST00000536344 KIF21AQ7Z4S6 1674 aa32.81■■■□□ 2.84
TRIM3-214ENST00000536344 IGF1RP08069 1367 aa32.8■■■□□ 2.84
TRIM3-214ENST00000536344 MYT1Q01538 1121 aa32.72■■■□□ 2.83
TRIM3-214ENST00000536344 GTF3C3Q9Y5Q9 886 aa32.7■■■□□ 2.83
TRIM3-214ENST00000536344 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
TRIM3-214ENST00000536344 CARMIL1Q5VZK9 1371 aa32.66■■■□□ 2.82
TRIM3-214ENST00000536344 TDRD9Q8NDG6 1382 aaKnown RBP32.66■■■□□ 2.82
TRIM3-214ENST00000536344 ABCA10Q8WWZ4 1543 aa32.57■■■□□ 2.81
TRIM3-214ENST00000536344 VPS8Q8N3P4 1428 aa32.51■■■□□ 2.79
TRIM3-214ENST00000536344 P3H3Q8IVL6 736 aa32.46■■■□□ 2.79
TRIM3-214ENST00000536344 APLP2Q06481 763 aa32.45■■■□□ 2.79
TRIM3-214ENST00000536344 ARAP1Q96P48 1450 aa32.44■■■□□ 2.78
TRIM3-214ENST00000536344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.37■■■□□ 2.77
TRIM3-214ENST00000536344 MRC2Q9UBG0 1479 aa32.37■■■□□ 2.77
TRIM3-214ENST00000536344 ERCC6Q03468 1493 aa32.36■■■□□ 2.77
TRIM3-214ENST00000536344 GAPVD1Q14C86 1478 aa32.36■■■□□ 2.77
TRIM3-214ENST00000536344 ARHGAP35Q9NRY4 1499 aa32.35■■■□□ 2.77
TRIM3-214ENST00000536344 WDR97A6NE52 1622 aa32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms