Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ABCC1-206ENST00000574761 996 ntTSL 211.33□□□□□ -0.67e-6■■□□□ 14.3
SMNDC1O75940 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.67e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-204ENST00000412947 595 ntTSL 1 (best)11.28□□□□□ -0.67e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-210ENST00000449785 735 ntTSL 311.28□□□□□ -0.67e-6■■□□□ 14.3
SMNDC1O75940 INTS11-231ENST00000526797 659 ntTSL 411.25□□□□□ -0.613e-6■■□□□ 14.3
SMNDC1O75940 CHD2-205ENST00000625662 5127 ntTSL 511.23□□□□□ -0.613e-7■■□□□ 14.3
SMNDC1O75940 INPPL1-204ENST00000537656 550 ntTSL 211.2□□□□□ -0.627e-6■■□□□ 14.3
SMNDC1O75940 POLE-210ENST00000537064 8011 ntTSL 1 (best)11.18□□□□□ -0.627e-6■■□□□ 14.3
SMNDC1O75940 ABCC1-208ENST00000576557 542 ntTSL 411.11□□□□□ -0.637e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-211ENST00000460331 562 ntTSL 411.02□□□□□ -0.657e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.677e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-201ENST00000292393 512 ntTSL 210.79□□□□□ -0.687e-6■■□□□ 14.3
SMNDC1O75940 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.727e-6■■□□□ 14.3
SMNDC1O75940 ABCC1-203ENST00000572053 744 ntTSL 310.54□□□□□ -0.727e-6■■□□□ 14.3
SMNDC1O75940 DNPEP-213ENST00000488881 629 ntTSL 210.38□□□□□ -0.757e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-215ENST00000487620 2660 ntTSL 210.35□□□□□ -0.757e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-214ENST00000485892 722 ntTSL 210.25□□□□□ -0.777e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.797e-6■■□□□ 14.3
SMNDC1O75940 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.81e-8■■□□□ 14.3
SMNDC1O75940 ZNF3-207ENST00000424697 2718 ntAPPRIS P1 TSL 3 BASIC9.93□□□□□ -0.827e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-203ENST00000409451 5937 ntTSL 1 (best) BASIC9.91□□□□□ -0.827e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-220ENST00000440945 2658 ntTSL 1 (best)9.63□□□□□ -0.877e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC9.6□□□□□ -0.877e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-205ENST00000413658 1441 ntTSL 1 (best) BASIC9.56□□□□□ -0.887e-6■■□□□ 14.3
SMNDC1O75940 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.881e-6■■□□□ 14.3
SMNDC1O75940 PPIG-202ENST00000409714 2615 ntTSL 1 (best) BASIC9.46□□□□□ -0.97e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-204ENST00000409480 5976 ntTSL 5 BASIC9.41□□□□□ -0.97e-6■■□□□ 14.3
SMNDC1O75940 SNX5-205ENST00000463050 845 ntTSL 29.34□□□□□ -0.917e-6■■□□□ 14.3
SMNDC1O75940 ZNF3-208ENST00000428683 999 ntTSL 29.3□□□□□ -0.927e-6■■□□□ 14.3
SMNDC1O75940 CHD2-226ENST00000636881 3545 ntTSL 59.25□□□□□ -0.933e-7■■□□□ 14.3
SMNDC1O75940 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.967e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC9.03□□□□□ -0.967e-6■■□□□ 14.3
SMNDC1O75940 AKR1B1-206ENST00000467251 723 ntTSL 48.99□□□□□ -0.977e-6■■□□□ 14.3
SMNDC1O75940 CHD2-229ENST00000637789 904 ntTSL 58.87□□□□□ -0.993e-7■■□□□ 14.3
SMNDC1O75940 WDR73-203ENST00000558019 528 ntTSL 48.58□□□□□ -1.047e-6■■□□□ 14.3
SMNDC1O75940 WDR73-204ENST00000558487 564 ntTSL 28.56□□□□□ -1.047e-6■■□□□ 14.3
SMNDC1O75940 ZNF337-203ENST00000481610 572 ntTSL 38.53□□□□□ -1.047e-6■■□□□ 14.3
SMNDC1O75940 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC8.37□□□□□ -1.071e-8■■□□□ 14.3
SMNDC1O75940 SNX5-211ENST00000483485 3087 ntTSL 28.05□□□□□ -1.127e-6■■□□□ 14.3
SMNDC1O75940 CHD2-216ENST00000629104 649 ntTSL 57.91□□□□□ -1.143e-7■■□□□ 14.3
SMNDC1O75940 NPM1-205ENST00000518587 670 ntTSL 27.69□□□□□ -1.181e-8■■□□□ 14.3
SMNDC1O75940 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.217e-6■■□□□ 14.3
SMNDC1O75940 MIR6872-201ENST00000612981 62 ntBASIC7.49□□□□□ -1.217e-6■■□□□ 14.3
SMNDC1O75940 NPM1-208ENST00000521672 597 ntTSL 57.31□□□□□ -1.241e-8■■□□□ 14.3
SMNDC1O75940 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.257e-6■■□□□ 14.3
SMNDC1O75940 WDR73-212ENST00000559877 551 ntTSL 37.21□□□□□ -1.267e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-231ENST00000474312 4687 ntTSL 27.09□□□□□ -1.287e-6■■□□□ 14.3
SMNDC1O75940 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.287e-6■■□□□ 14.3
SMNDC1O75940 SNX5-209ENST00000476648 950 ntTSL 37.01□□□□□ -1.297e-6■■□□□ 14.3
SMNDC1O75940 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.97□□□□□ -1.297e-6■■□□□ 14.3
SMNDC1O75940 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.84□□□□□ -1.311e-6■■□□□ 14.3
SMNDC1O75940 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.6□□□□□ -1.351e-8■■□□□ 14.3
SMNDC1O75940 NPM1-211ENST00000523622 247 ntTSL 36.24□□□□□ -1.411e-8■■□□□ 14.3
SMNDC1O75940 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.577e-6■■□□□ 14.3
SMNDC1O75940 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.577e-6■■□□□ 14.3
SMNDC1O75940 NPM1-210ENST00000523339 268 ntTSL 24.22□□□□□ -1.731e-8■■□□□ 14.3
SMNDC1O75940 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.12□□□□□ -1.917e-6■■□□□ 14.3
SMNDC1O75940 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.991e-29■■□□□ 14.3
SMNDC1O75940 SNORD94-201ENST00000386037 137 ntBASIC6.07□□□□□ -1.441e-29■■□□□ 14.3
SMNDC1O75940 PTCD3-216ENST00000487043 1054 ntTSL 35.94□□□□□ -1.461e-29■■□□□ 14.3
SMNDC1O75940 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC12.23□□□□□ -0.452e-7■■□□□ 14.3
SMNDC1O75940 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC8.62□□□□□ -1.032e-7■■□□□ 14.3
SMNDC1O75940 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.062e-6■■□□□ 14.2
SMNDC1O75940 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC15.03■□□□□ -01e-49■■□□□ 14.2
SMNDC1O75940 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.171e-49■■□□□ 14.2
SMNDC1O75940 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.311e-49■■□□□ 14.2
SMNDC1O75940 NSD2-210ENST00000482415 3602 ntTSL 1 (best)12.83□□□□□ -0.361e-49■■□□□ 14.2
SMNDC1O75940 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.451e-49■■□□□ 14.2
SMNDC1O75940 NSD2-202ENST00000353275 7980 ntTSL 1 (best)11.43□□□□□ -0.581e-49■■□□□ 14.2
SMNDC1O75940 NSD2-201ENST00000312087 8050 ntTSL 1 (best)10.67□□□□□ -0.71e-49■■□□□ 14.2
SMNDC1O75940 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.011e-49■■□□□ 14.2
SMNDC1O75940 SCARNA22-201ENST00000503991 125 ntBASIC4.2□□□□□ -1.741e-49■■□□□ 14.2
SMNDC1O75940 SNORD65B-201ENST00000459126 73 ntBASIC3.62□□□□□ -1.832e-22■■□□□ 14.2
SMNDC1O75940 SNORD82-201ENST00000365530 70 ntBASIC5.59□□□□□ -1.515e-83■■□□□ 14.2
SMNDC1O75940 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.88■■□□□ 1.419e-8■■□□□ 14.2
SMNDC1O75940 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.119e-8■■□□□ 14.2
SMNDC1O75940 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.14■□□□□ 0.812e-6■■□□□ 14.2
SMNDC1O75940 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.822e-6■■□□□ 14.2
SMNDC1O75940 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.982e-6■■□□□ 14.2
SMNDC1O75940 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.917e-7■■□□□ 14.2
SMNDC1O75940 TRIR-204ENST00000591254 988 ntTSL 223.14■■□□□ 1.297e-7■■□□□ 14.2
SMNDC1O75940 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.21■□□□□ 0.997e-7■■□□□ 14.2
SMNDC1O75940 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.6■□□□□ 0.897e-7■■□□□ 14.2
SMNDC1O75940 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.777e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-228ENST00000509552 2304 ntTSL 1 (best)18.37■□□□□ 0.537e-7■■□□□ 14.2
SMNDC1O75940 CYBA-203ENST00000562209 624 ntTSL 517.53■□□□□ 0.47e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.73■□□□□ 0.277e-7■■□□□ 14.2
SMNDC1O75940 MICALL2-203ENST00000460198 533 ntTSL 316.66■□□□□ 0.267e-7■■□□□ 14.2
SMNDC1O75940 GET4-207ENST00000483469 370 ntTSL 216.54■□□□□ 0.247e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.197e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.167e-7■■□□□ 14.2
SMNDC1O75940 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.39■□□□□ 0.057e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.037e-7■■□□□ 14.2
SMNDC1O75940 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.32□□□□□ -0.127e-7■■□□□ 14.2
SMNDC1O75940 CYBA-202ENST00000561972 464 ntTSL 314.2□□□□□ -0.147e-7■■□□□ 14.2
SMNDC1O75940 CYBA-204ENST00000563526 1052 ntTSL 213.99□□□□□ -0.177e-7■■□□□ 14.2
SMNDC1O75940 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.43□□□□□ -0.267e-7■■□□□ 14.2
SMNDC1O75940 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.347e-7■■□□□ 14.2
SMNDC1O75940 CCHCR1-211ENST00000467553 589 ntTSL 312.58□□□□□ -0.47e-7■■□□□ 14.2
SMNDC1O75940 BRD9-207ENST00000489093 1139 ntTSL 312.42□□□□□ -0.427e-7■■□□□ 14.2
Retrieved 100 of 11,362 protein–RNA pairs in 247 ms