RNA–Protein interactions for RNA: ENST00000636881.1

CHD2-226, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 3,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-226ENST00000636881 NISCHQ9Y2I1 1504 aa16.21■□□□□ 0.19
CHD2-226ENST00000636881 SHROOM4Q9ULL8 1493 aa14.34□□□□□ -0.11
CHD2-226ENST00000636881 HRCP23327 699 aa14.31□□□□□ -0.12
CHD2-226ENST00000636881 SUPT5HO00267 1087 aaKnown RBP14.28□□□□□ -0.12
CHD2-226ENST00000636881 PCGF6Q9BYE7 350 aa14.08□□□□□ -0.16
CHD2-226ENST00000636881 MYO15BQ96JP2 1530 aa14.01□□□□□ -0.17
CHD2-226ENST00000636881 PPARGC1BQ86YN6 1023 aaKnown RBP14□□□□□ -0.17
CHD2-226ENST00000636881 CHIC1Q5VXU3 224 aa13.98□□□□□ -0.17
CHD2-226ENST00000636881 PELP1Q8IZL8 1130 aaKnown RBP13.78□□□□□ -0.2
CHD2-226ENST00000636881 ZCCHC6Q5VYS8 1495 aaKnown RBP13.78□□□□□ -0.2
CHD2-226ENST00000636881 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
CHD2-226ENST00000636881 TRIM26Q12899 539 aaPredicted RBP13.65□□□□□ -0.22
CHD2-226ENST00000636881 LOC105371045A0A1W2PR82 267 aa13.64□□□□□ -0.23
CHD2-226ENST00000636881 DCAF8L2P0C7V8 631 aa13.59□□□□□ -0.23
CHD2-226ENST00000636881 CCDC180Q9P1Z9 1646 aa13.59□□□□□ -0.23
CHD2-226ENST00000636881 ZEB1P37275 1124 aaPredicted RBP13.57□□□□□ -0.24
CHD2-226ENST00000636881 SCAF1Q9H7N4 1312 aaKnown RBP13.47□□□□□ -0.25
CHD2-226ENST00000636881 MYT1Q01538 1121 aa13.24□□□□□ -0.29
CHD2-226ENST00000636881 TRIM41Q8WV44 630 aa13.22□□□□□ -0.29
CHD2-226ENST00000636881 ACIN1Q9UKV3 1341 aaKnown RBP13.22□□□□□ -0.29
CHD2-226ENST00000636881 FAM9AQ8IZU1 332 aaPredicted RBP13.21□□□□□ -0.29
CHD2-226ENST00000636881 EHMT2Q96KQ7 1210 aa13.16□□□□□ -0.3
CHD2-226ENST00000636881 NEUROD1Q13562 356 aa13.15□□□□□ -0.3
CHD2-226ENST00000636881 CENPBP07199 599 aaPredicted RBP13.13□□□□□ -0.31
CHD2-226ENST00000636881 GTF3C3Q9Y5Q9 886 aa13.1□□□□□ -0.31
CHD2-226ENST00000636881 ABCC9O60706 1549 aa13.09□□□□□ -0.31
CHD2-226ENST00000636881 CCER1Q8TC90 406 aaPredicted RBP13.09□□□□□ -0.31
CHD2-226ENST00000636881 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.07□□□□□ -0.32
CHD2-226ENST00000636881 DIEXFQ68CQ4 756 aaKnown RBP13.04□□□□□ -0.32
CHD2-226ENST00000636881 RSF1Q96T23 1441 aaPredicted RBP13.01□□□□□ -0.33
CHD2-226ENST00000636881 RB1CC1Q8TDY2 1594 aa12.97□□□□□ -0.33
CHD2-226ENST00000636881 SCRIBQ14160 1630 aa12.89□□□□□ -0.35
CHD2-226ENST00000636881 YTHDC1Q96MU7 727 aaKnown RBP12.85□□□□□ -0.35
CHD2-226ENST00000636881 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
CHD2-226ENST00000636881 ZNF316A6NFI3 1004 aaPredicted RBP12.82□□□□□ -0.36
CHD2-226ENST00000636881 MIER1Q8N108 512 aa12.68□□□□□ -0.38
CHD2-226ENST00000636881 WRNQ14191 1432 aaPredicted RBP eCLIP12.68□□□□□ -0.38
CHD2-226ENST00000636881 CECR2Q9BXF3 1484 aa12.67□□□□□ -0.38
CHD2-226ENST00000636881 MROH2BQ7Z745 1585 aa12.65□□□□□ -0.38
CHD2-226ENST00000636881 CEP162Q5TB80 1403 aa12.65□□□□□ -0.38
CHD2-226ENST00000636881 WIZO95785 1651 aa12.63□□□□□ -0.39
CHD2-226ENST00000636881 UBTFP17480 764 aaKnown RBP12.58□□□□□ -0.4
CHD2-226ENST00000636881 TNIKQ9UKE5 1360 aa12.57□□□□□ -0.4
CHD2-226ENST00000636881 HNRNPUL2Q1KMD3 747 aaKnown RBP12.57□□□□□ -0.4
CHD2-226ENST00000636881 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
CHD2-226ENST00000636881 BAZ1AQ9NRL2 1556 aaPredicted RBP12.54□□□□□ -0.4
CHD2-226ENST00000636881 ABCC8Q09428 1581 aa12.53□□□□□ -0.4
CHD2-226ENST00000636881 CCDC88BA6NC98 1476 aa12.53□□□□□ -0.4
CHD2-226ENST00000636881 CLSPNQ9HAW4 1339 aa12.52□□□□□ -0.41
CHD2-226ENST00000636881 CSRNP3Q8WYN3 585 aa12.49□□□□□ -0.41
CHD2-226ENST00000636881 SOGA1O94964 1423 aa12.49□□□□□ -0.41
CHD2-226ENST00000636881 SUPT16HQ9Y5B9 1047 aaKnown RBP12.48□□□□□ -0.41
CHD2-226ENST00000636881 EEA1Q15075 1411 aa12.47□□□□□ -0.41
CHD2-226ENST00000636881 GOLGA3Q08378 1498 aa12.44□□□□□ -0.42
CHD2-226ENST00000636881 NACADO15069 1562 aa12.44□□□□□ -0.42
CHD2-226ENST00000636881 APLP2Q06481 763 aa12.42□□□□□ -0.42
CHD2-226ENST00000636881 ANP32EQ9BTT0 268 aa12.42□□□□□ -0.42
CHD2-226ENST00000636881 RUSC2Q8N2Y8 1516 aa12.4□□□□□ -0.42
CHD2-226ENST00000636881 TSHZ2Q9NRE2 1034 aa12.4□□□□□ -0.43
CHD2-226ENST00000636881 TOP2AP11388 1531 aaKnown RBP12.39□□□□□ -0.43
CHD2-226ENST00000636881 SMARCA2P51531 1590 aa12.34□□□□□ -0.43
CHD2-226ENST00000636881 CLIP1P30622 1438 aa12.34□□□□□ -0.43
CHD2-226ENST00000636881 BCL11AQ9H165 835 aa12.32□□□□□ -0.44
CHD2-226ENST00000636881 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
CHD2-226ENST00000636881 VPS8Q8N3P4 1428 aa12.31□□□□□ -0.44
CHD2-226ENST00000636881 RANGAP1P46060 587 aaPredicted RBP12.29□□□□□ -0.44
CHD2-226ENST00000636881 BCANQ96GW7 911 aa12.27□□□□□ -0.45
CHD2-226ENST00000636881 SMARCA4P51532 1647 aa12.27□□□□□ -0.45
CHD2-226ENST00000636881 DHX57Q6P158 1386 aaKnown RBP12.27□□□□□ -0.45
CHD2-226ENST00000636881 KIF21BO75037 1637 aa12.25□□□□□ -0.45
CHD2-226ENST00000636881 FKBP8Q14318 412 aa12.2□□□□□ -0.46
CHD2-226ENST00000636881 BAZ1BQ9UIG0 1483 aaKnown RBP12.19□□□□□ -0.46
CHD2-226ENST00000636881 NEFLP07196 543 aa12.19□□□□□ -0.46
CHD2-226ENST00000636881 KCNH8Q96L42 1107 aa12.17□□□□□ -0.46
CHD2-226ENST00000636881 RAPGEF2Q9Y4G8 1499 aa12.16□□□□□ -0.46
CHD2-226ENST00000636881 SYNJ1O43426 1573 aa12.15□□□□□ -0.46
CHD2-226ENST00000636881 RBM19Q9Y4C8 960 aaKnown RBP12.13□□□□□ -0.47
CHD2-226ENST00000636881 ITGAEP38570 1179 aa12.1□□□□□ -0.47
CHD2-226ENST00000636881 KANK4Q5T7N3 995 aaPredicted RBP12.09□□□□□ -0.47
CHD2-226ENST00000636881 DDX10Q13206 875 aaKnown RBP12.08□□□□□ -0.48
CHD2-226ENST00000636881 RRBP1Q9P2E9 1410 aaKnown RBP12.05□□□□□ -0.48
CHD2-226ENST00000636881 ERICH6Q7L0X2 663 aa12.04□□□□□ -0.48
CHD2-226ENST00000636881 CCNB3Q8WWL7 1395 aa12.04□□□□□ -0.48
CHD2-226ENST00000636881 ARAP1Q96P48 1450 aa12.03□□□□□ -0.48
CHD2-226ENST00000636881 TRIM52Q96A61 297 aa12.02□□□□□ -0.48
CHD2-226ENST00000636881 CUX2O14529 1486 aa12.02□□□□□ -0.49
CHD2-226ENST00000636881 UNC13AQ9UPW8 1703 aa12□□□□□ -0.49
CHD2-226ENST00000636881 ANP32CO43423 234 aa12□□□□□ -0.49
CHD2-226ENST00000636881 RAB3GAP2Q9H2M9 1393 aa12□□□□□ -0.49
CHD2-226ENST00000636881 ERICH3Q5RHP9 1530 aa11.98□□□□□ -0.49
CHD2-226ENST00000636881 CCER2I3L3R5 266 aa11.97□□□□□ -0.49
CHD2-226ENST00000636881 MSH5O43196 834 aa11.97□□□□□ -0.49
CHD2-226ENST00000636881 MAPKBP1O60336 1514 aa11.96□□□□□ -0.49
CHD2-226ENST00000636881 CDK11AQ9UQ88 783 aaPredicted RBP11.95□□□□□ -0.5
CHD2-226ENST00000636881 WDR97A6NE52 1622 aa11.95□□□□□ -0.5
CHD2-226ENST00000636881 PPP1R15AO75807 674 aaPredicted RBP11.95□□□□□ -0.5
CHD2-226ENST00000636881 SIN3AQ96ST3 1273 aa11.95□□□□□ -0.5
CHD2-226ENST00000636881 PABPN1Q86U42 306 aaKnown RBP eCLIP11.94□□□□□ -0.5
CHD2-226ENST00000636881 HIRIP3Q9BW71 556 aaPredicted RBP11.94□□□□□ -0.5
CHD2-226ENST00000636881 TOP2BQ02880 1626 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms