RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 AEBP2Q6ZN18 517 aaPredicted RBP20.33■□□□□ 0.85
PTCD3-216ENST00000487043 CHIC1Q5VXU3 224 aa19.29■□□□□ 0.68
PTCD3-216ENST00000487043 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
PTCD3-216ENST00000487043 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
PTCD3-216ENST00000487043 FOXD1Q16676 465 aa16.19■□□□□ 0.18
PTCD3-216ENST00000487043 PLPPR3Q6T4P5 718 aa15.42■□□□□ 0.06
PTCD3-216ENST00000487043 MSH5O43196 834 aa15.2■□□□□ 0.02
PTCD3-216ENST00000487043 PIAS4Q8N2W9 510 aaPredicted RBP15.18■□□□□ 0.02
PTCD3-216ENST00000487043 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
PTCD3-216ENST00000487043 ADRA2BP18089 450 aa15.08■□□□□ 0
PTCD3-216ENST00000487043 POTEDQ86YR6 584 aa14.9□□□□□ -0.02
PTCD3-216ENST00000487043 MAPK8IP2Q13387 824 aaPredicted RBP13.86□□□□□ -0.19
PTCD3-216ENST00000487043 SCAF1Q9H7N4 1312 aaKnown RBP13.84□□□□□ -0.19
PTCD3-216ENST00000487043 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
PTCD3-216ENST00000487043 PPP4R3CPQ6ZMV5 832 aa13.51□□□□□ -0.25
PTCD3-216ENST00000487043 DCAF8L1A6NGE4 600 aa13.32□□□□□ -0.28
PTCD3-216ENST00000487043 CNKSR2Q8WXI2 1034 aa13.26□□□□□ -0.29
PTCD3-216ENST00000487043 HOXD11P31277 338 aaPredicted RBP13.22□□□□□ -0.29
PTCD3-216ENST00000487043 RNF216Q9NWF9 866 aaPredicted RBP13.14□□□□□ -0.31
PTCD3-216ENST00000487043 CACNB1Q02641 598 aaPredicted RBP13.11□□□□□ -0.31
PTCD3-216ENST00000487043 NCBP3Q53F19 620 aaKnown RBP13.01□□□□□ -0.33
PTCD3-216ENST00000487043 RNF39Q9H2S5 420 aa12.94□□□□□ -0.34
PTCD3-216ENST00000487043 NPM3O75607 178 aaKnown RBP12.77□□□□□ -0.37
PTCD3-216ENST00000487043 C1QBPQ07021 282 aaKnown RBP12.77□□□□□ -0.37
PTCD3-216ENST00000487043 DNAJC5BQ9UF47 199 aa12.75□□□□□ -0.37
PTCD3-216ENST00000487043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.69□□□□□ -0.385e-7■□□□□ 10.8
PTCD3-216ENST00000487043 KCNA4P22459 653 aa12.5□□□□□ -0.41
PTCD3-216ENST00000487043 U3KPZ7 1027 aaPredicted RBP12.35□□□□□ -0.43
PTCD3-216ENST00000487043 CAPN15O75808 1086 aa12.24□□□□□ -0.45
PTCD3-216ENST00000487043 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
PTCD3-216ENST00000487043 SLC4A2P04920 1241 aa12.19□□□□□ -0.46
PTCD3-216ENST00000487043 DSG3P32926 999 aa12.11□□□□□ -0.47
PTCD3-216ENST00000487043 APLP2Q06481 763 aa12.06□□□□□ -0.48
PTCD3-216ENST00000487043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.04□□□□□ -0.48
PTCD3-216ENST00000487043 TRHP20396 242 aaPredicted RBP12.04□□□□□ -0.48
PTCD3-216ENST00000487043 HNRNPUL2Q1KMD3 747 aaKnown RBP12.04□□□□□ -0.48
PTCD3-216ENST00000487043 ZNF219Q9P2Y4 722 aaPredicted RBP11.98□□□□□ -0.49
PTCD3-216ENST00000487043 SAMD1Q6SPF0 538 aaPredicted RBP11.96□□□□□ -0.49
PTCD3-216ENST00000487043 ABCB7O75027 752 aa11.94□□□□□ -0.5
PTCD3-216ENST00000487043 MYCNP04198 464 aaPredicted RBP11.83□□□□□ -0.52
PTCD3-216ENST00000487043 SLC4A1APQ9BWU0 796 aaKnown RBP11.82□□□□□ -0.52
PTCD3-216ENST00000487043 POTEHQ6S545 545 aa11.69□□□□□ -0.54
PTCD3-216ENST00000487043 FOXD4L1Q9NU39 408 aa11.69□□□□□ -0.54
PTCD3-216ENST00000487043 POLA2Q14181 598 aa11.67□□□□□ -0.54
PTCD3-216ENST00000487043 EHMT2Q96KQ7 1210 aa11.64□□□□□ -0.55
PTCD3-216ENST00000487043 RBM42Q9BTD8 480 aaKnown RBP11.6□□□□□ -0.55
PTCD3-216ENST00000487043 ATF5Q9Y2D1 282 aaPredicted RBP11.54□□□□□ -0.56
PTCD3-216ENST00000487043 ZBTB22O15209 634 aa11.5□□□□□ -0.57
PTCD3-216ENST00000487043 ZBTB12Q9Y330 459 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-216ENST00000487043 CHRDL2Q6WN34 429 aa11.35□□□□□ -0.59
PTCD3-216ENST00000487043 ATXN8OSP0DMR3 200 aa11.3□□□□□ -0.6
PTCD3-216ENST00000487043 OSCARQ8IYS5 282 aa11.3□□□□□ -0.6
PTCD3-216ENST00000487043 AKT1S1Q96B36 256 aa11.3□□□□□ -0.6
PTCD3-216ENST00000487043 CSRNP3Q8WYN3 585 aa11.23□□□□□ -0.61
PTCD3-216ENST00000487043 REM2Q8IYK8 340 aaPredicted RBP11.2□□□□□ -0.62
PTCD3-216ENST00000487043 FBLN2P98095 1184 aa11.16□□□□□ -0.62
PTCD3-216ENST00000487043 PITPNM1O00562 1244 aa11.07□□□□□ -0.64
PTCD3-216ENST00000487043 SPDYE2BA6NHP3 402 aa11.06□□□□□ -0.64
PTCD3-216ENST00000487043 SPDYE6P0CI01 402 aa11.06□□□□□ -0.64
PTCD3-216ENST00000487043 SPDYE2Q495Y8 402 aa11.06□□□□□ -0.64
PTCD3-216ENST00000487043 PIP4P2Q8N4L2 257 aa11.06□□□□□ -0.64
PTCD3-216ENST00000487043 MKRN4PQ13434 485 aaPredicted RBP10.99□□□□□ -0.65
PTCD3-216ENST00000487043 FXR2P51116 673 aaKnown RBP eCLIP10.96□□□□□ -0.65
PTCD3-216ENST00000487043 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
PTCD3-216ENST00000487043 HAX1O00165 279 aa10.93□□□□□ -0.66
PTCD3-216ENST00000487043 SP7Q8TDD2 431 aaPredicted RBP10.93□□□□□ -0.66
PTCD3-216ENST00000487043 CLEC11AQ9Y240 323 aa10.93□□□□□ -0.66
PTCD3-216ENST00000487043 SPDYE1Q8NFV5 336 aaPredicted RBP10.9□□□□□ -0.66
PTCD3-216ENST00000487043 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
PTCD3-216ENST00000487043 PRKAR2AP13861 404 aaKnown RBP10.82□□□□□ -0.68
PTCD3-216ENST00000487043 PABPN1Q86U42 306 aaKnown RBP eCLIP10.78□□□□□ -0.68
PTCD3-216ENST00000487043 PRR29P0C7W0 189 aa10.72□□□□□ -0.69
PTCD3-216ENST00000487043 EVX2Q03828 476 aa10.71□□□□□ -0.69
PTCD3-216ENST00000487043 CHADLQ6NUI6 762 aa10.68□□□□□ -0.7
PTCD3-216ENST00000487043 C19orf67A6NJJ6 358 aa10.61□□□□□ -0.71
PTCD3-216ENST00000487043 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
PTCD3-216ENST00000487043 FARP1Q9Y4F1 1045 aaPredicted RBP10.51□□□□□ -0.73
PTCD3-216ENST00000487043 GABBR2O75899 941 aa10.49□□□□□ -0.73
PTCD3-216ENST00000487043 STAG3Q9UJ98 1225 aa10.48□□□□□ -0.73
PTCD3-216ENST00000487043 CD44P16070 742 aaKnown RBP10.47□□□□□ -0.73
PTCD3-216ENST00000487043 CREBZFQ9NS37 354 aa10.38□□□□□ -0.75
PTCD3-216ENST00000487043 ZRANB1Q9UGI0 708 aa10.33□□□□□ -0.76
PTCD3-216ENST00000487043 CLCN6P51797 869 aa10.31□□□□□ -0.76
PTCD3-216ENST00000487043 PAK3O75914 559 aaPredicted RBP10.27□□□□□ -0.77
PTCD3-216ENST00000487043 LHX8Q68G74 356 aa10.27□□□□□ -0.77
PTCD3-216ENST00000487043 ZNF579Q8NAF0 562 aaKnown RBP10.27□□□□□ -0.77
PTCD3-216ENST00000487043 DCBLD2Q96PD2 775 aa10.26□□□□□ -0.77
PTCD3-216ENST00000487043 NPM1P06748 294 aaKnown RBP eCLIP10.25□□□□□ -0.77
PTCD3-216ENST00000487043 POTEIP0CG38 1075 aa10.23□□□□□ -0.77
PTCD3-216ENST00000487043 PROM2Q8N271 834 aa10.2□□□□□ -0.78
PTCD3-216ENST00000487043 GALR2O43603 387 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-216ENST00000487043 MNX1P50219 401 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-216ENST00000487043 PHF12Q96QT6 1004 aa10.16□□□□□ -0.78
PTCD3-216ENST00000487043 FKBP8Q14318 412 aa10.15□□□□□ -0.78
PTCD3-216ENST00000487043 PLEKHG5O94827 1062 aa10.09□□□□□ -0.79
PTCD3-216ENST00000487043 TSPYL2Q9H2G4 693 aaPredicted RBP10.08□□□□□ -0.8
PTCD3-216ENST00000487043 RTN4Q9NQC3 1192 aaKnown RBP10.08□□□□□ -0.8
PTCD3-216ENST00000487043 AMER1Q5JTC6 1135 aaPredicted RBP10.07□□□□□ -0.8
PTCD3-216ENST00000487043 MIER1Q8N108 512 aa10.07□□□□□ -0.8
PTCD3-216ENST00000487043 MS4A3Q96HJ5 214 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms