RNA–Protein interactions for RNA: ENST00000299667.8

ZNF3-202, Transcript of zinc finger protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF3, Length 2,799 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF3-202ENST00000299667 NISCHQ9Y2I1 1504 aa16.88■□□□□ 0.29
ZNF3-202ENST00000299667 SHROOM4Q9ULL8 1493 aa14.84□□□□□ -0.03
ZNF3-202ENST00000299667 SUPT5HO00267 1087 aaKnown RBP14.68□□□□□ -0.06
ZNF3-202ENST00000299667 AEBP2Q6ZN18 517 aaPredicted RBP14.51□□□□□ -0.09
ZNF3-202ENST00000299667 CHIC1Q5VXU3 224 aa14.49□□□□□ -0.09
ZNF3-202ENST00000299667 ZCCHC6Q5VYS8 1495 aaKnown RBP14.29□□□□□ -0.12
ZNF3-202ENST00000299667 DCAF8L2P0C7V8 631 aa14.27□□□□□ -0.12
ZNF3-202ENST00000299667 MYO15BQ96JP2 1530 aa14.26□□□□□ -0.13
ZNF3-202ENST00000299667 HRCP23327 699 aa14.23□□□□□ -0.13
ZNF3-202ENST00000299667 PCGF6Q9BYE7 350 aa14.17□□□□□ -0.14
ZNF3-202ENST00000299667 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
ZNF3-202ENST00000299667 PPARGC1BQ86YN6 1023 aaKnown RBP14.04□□□□□ -0.16
ZNF3-202ENST00000299667 LOC105371045A0A1W2PR82 267 aa13.98□□□□□ -0.17
ZNF3-202ENST00000299667 DCAF1Q9Y4B6 1507 aa13.81□□□□□ -0.2
ZNF3-202ENST00000299667 TRIM26Q12899 539 aaPredicted RBP13.73□□□□□ -0.21
ZNF3-202ENST00000299667 FAM9AQ8IZU1 332 aaPredicted RBP13.6□□□□□ -0.23
ZNF3-202ENST00000299667 TRIM41Q8WV44 630 aa13.57□□□□□ -0.24
ZNF3-202ENST00000299667 EHMT2Q96KQ7 1210 aa13.57□□□□□ -0.24
ZNF3-202ENST00000299667 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.25
ZNF3-202ENST00000299667 ABCC9O60706 1549 aa13.51□□□□□ -0.25
ZNF3-202ENST00000299667 ZEB1P37275 1124 aaPredicted RBP13.48□□□□□ -0.25
ZNF3-202ENST00000299667 SCRIBQ14160 1630 aa13.46□□□□□ -0.25
ZNF3-202ENST00000299667 RB1CC1Q8TDY2 1594 aa13.39□□□□□ -0.27
ZNF3-202ENST00000299667 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
ZNF3-202ENST00000299667 CECR2Q9BXF3 1484 aa13.27□□□□□ -0.29
ZNF3-202ENST00000299667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.24□□□□□ -0.29
ZNF3-202ENST00000299667 MROH2BQ7Z745 1585 aa13.2□□□□□ -0.3
ZNF3-202ENST00000299667 CCER1Q8TC90 406 aaPredicted RBP13.19□□□□□ -0.3
ZNF3-202ENST00000299667 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
ZNF3-202ENST00000299667 TTBK1Q5TCY1 1321 aaPredicted RBP13.16□□□□□ -0.3
ZNF3-202ENST00000299667 NACADO15069 1562 aa13.15□□□□□ -0.3
ZNF3-202ENST00000299667 WIZO95785 1651 aa13.13□□□□□ -0.31
ZNF3-202ENST00000299667 NEUROD1Q13562 356 aa13.08□□□□□ -0.32
ZNF3-202ENST00000299667 ACIN1Q9UKV3 1341 aaKnown RBP13.06□□□□□ -0.32
ZNF3-202ENST00000299667 DIEXFQ68CQ4 756 aaKnown RBP13.03□□□□□ -0.32
ZNF3-202ENST00000299667 GTF3C3Q9Y5Q9 886 aa12.98□□□□□ -0.33
ZNF3-202ENST00000299667 ABCC8Q09428 1581 aa12.97□□□□□ -0.33
ZNF3-202ENST00000299667 CCDC88BA6NC98 1476 aa12.97□□□□□ -0.33
ZNF3-202ENST00000299667 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
ZNF3-202ENST00000299667 EIF4G1Q04637 1599 aaKnown RBP12.94□□□□□ -0.34
ZNF3-202ENST00000299667 CENPBP07199 599 aaPredicted RBP12.93□□□□□ -0.34
ZNF3-202ENST00000299667 CEP162Q5TB80 1403 aa12.93□□□□□ -0.34
ZNF3-202ENST00000299667 UBTFP17480 764 aaKnown RBP12.93□□□□□ -0.34
ZNF3-202ENST00000299667 SOGA1O94964 1423 aa12.93□□□□□ -0.34
ZNF3-202ENST00000299667 WRNQ14191 1432 aaPredicted RBP eCLIP12.9□□□□□ -0.34
ZNF3-202ENST00000299667 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
ZNF3-202ENST00000299667 TNIKQ9UKE5 1360 aa12.87□□□□□ -0.35
ZNF3-202ENST00000299667 RUSC2Q8N2Y8 1516 aa12.86□□□□□ -0.35
ZNF3-202ENST00000299667 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
ZNF3-202ENST00000299667 YTHDC1Q96MU7 727 aaKnown RBP12.85□□□□□ -0.35
ZNF3-202ENST00000299667 TOP2AP11388 1531 aaKnown RBP12.85□□□□□ -0.35
ZNF3-202ENST00000299667 UNC13AQ9UPW8 1703 aa12.83□□□□□ -0.36
ZNF3-202ENST00000299667 HNRNPUL2Q1KMD3 747 aaKnown RBP12.82□□□□□ -0.36
ZNF3-202ENST00000299667 PHF23Q9BUL5 403 aaPredicted RBP12.82□□□□□ -0.36
ZNF3-202ENST00000299667 SMARCA2P51531 1590 aa12.82□□□□□ -0.36
ZNF3-202ENST00000299667 SMARCA4P51532 1647 aa12.79□□□□□ -0.36
ZNF3-202ENST00000299667 MIER1Q8N108 512 aa12.76□□□□□ -0.37
ZNF3-202ENST00000299667 EEA1Q15075 1411 aa12.74□□□□□ -0.37
ZNF3-202ENST00000299667 RANGAP1P46060 587 aaPredicted RBP12.74□□□□□ -0.37
ZNF3-202ENST00000299667 GOLGA3Q08378 1498 aa12.73□□□□□ -0.37
ZNF3-202ENST00000299667 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
ZNF3-202ENST00000299667 BICRAQ9NZM4 1560 aa12.7□□□□□ -0.38
ZNF3-202ENST00000299667 APLP2Q06481 763 aa12.66□□□□□ -0.38
ZNF3-202ENST00000299667 CLIP1P30622 1438 aa12.65□□□□□ -0.38
ZNF3-202ENST00000299667 CEP164Q9UPV0 1460 aa12.63□□□□□ -0.39
ZNF3-202ENST00000299667 SYNJ1O43426 1573 aa12.59□□□□□ -0.39
ZNF3-202ENST00000299667 VPS8Q8N3P4 1428 aa12.58□□□□□ -0.4
ZNF3-202ENST00000299667 RAPGEF2Q9Y4G8 1499 aa12.57□□□□□ -0.4
ZNF3-202ENST00000299667 KIF21BO75037 1637 aa12.54□□□□□ -0.4
ZNF3-202ENST00000299667 MYT1Q01538 1121 aa12.52□□□□□ -0.4
ZNF3-202ENST00000299667 KANK4Q5T7N3 995 aaPredicted RBP12.48□□□□□ -0.41
ZNF3-202ENST00000299667 BAZ1BQ9UIG0 1483 aaKnown RBP12.48□□□□□ -0.41
ZNF3-202ENST00000299667 DHX57Q6P158 1386 aaKnown RBP12.47□□□□□ -0.41
ZNF3-202ENST00000299667 ATAD2BQ9ULI0 1458 aa12.45□□□□□ -0.42
ZNF3-202ENST00000299667 PEG3Q9GZU2 1588 aa12.45□□□□□ -0.42
ZNF3-202ENST00000299667 ITGAEP38570 1179 aa12.43□□□□□ -0.42
ZNF3-202ENST00000299667 CLSPNQ9HAW4 1339 aa12.41□□□□□ -0.42
ZNF3-202ENST00000299667 SUPT16HQ9Y5B9 1047 aaKnown RBP12.4□□□□□ -0.42
ZNF3-202ENST00000299667 ARAP1Q96P48 1450 aa12.38□□□□□ -0.43
ZNF3-202ENST00000299667 TOP2BQ02880 1626 aa12.35□□□□□ -0.43
ZNF3-202ENST00000299667 PRXQ9BXM0 1461 aa12.35□□□□□ -0.43
ZNF3-202ENST00000299667 KCNH8Q96L42 1107 aa12.35□□□□□ -0.43
ZNF3-202ENST00000299667 CCNB3Q8WWL7 1395 aa12.3□□□□□ -0.44
ZNF3-202ENST00000299667 RRBP1Q9P2E9 1410 aaKnown RBP12.3□□□□□ -0.44
ZNF3-202ENST00000299667 ERICH3Q5RHP9 1530 aa12.3□□□□□ -0.44
ZNF3-202ENST00000299667 BIVM-ERCC5R4GMW8 1640 aa12.27□□□□□ -0.45
ZNF3-202ENST00000299667 TSHZ2Q9NRE2 1034 aa12.27□□□□□ -0.45
ZNF3-202ENST00000299667 KIF27Q86VH2 1401 aa12.26□□□□□ -0.45
ZNF3-202ENST00000299667 BCANQ96GW7 911 aa12.26□□□□□ -0.45
ZNF3-202ENST00000299667 RAB3GAP2Q9H2M9 1393 aa12.25□□□□□ -0.45
ZNF3-202ENST00000299667 CUX1P39880 1505 aa12.25□□□□□ -0.45
ZNF3-202ENST00000299667 ARHGAP35Q9NRY4 1499 aa12.25□□□□□ -0.45
ZNF3-202ENST00000299667 CC2D2AQ9P2K1 1620 aa12.24□□□□□ -0.45
ZNF3-202ENST00000299667 DDX10Q13206 875 aaKnown RBP12.24□□□□□ -0.45
ZNF3-202ENST00000299667 SIN3AQ96ST3 1273 aa12.24□□□□□ -0.45
ZNF3-202ENST00000299667 CUX2O14529 1486 aa12.22□□□□□ -0.45
ZNF3-202ENST00000299667 HIRIP3Q9BW71 556 aaPredicted RBP12.21□□□□□ -0.45
ZNF3-202ENST00000299667 SENP3Q9H4L4 574 aaPredicted RBP12.21□□□□□ -0.45
ZNF3-202ENST00000299667 FAM50AQ14320 339 aaKnown RBP12.21□□□□□ -0.46
ZNF3-202ENST00000299667 ATP1B4Q9UN42 357 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms